puree 0.20.0 → 1.0.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +16 -2
- data/PITCHME.md +43 -21
- data/README.md +72 -18
- data/lib/puree.rb +66 -21
- data/lib/puree/api/api.rb +9 -0
- data/lib/puree/api/authentication.rb +33 -0
- data/lib/puree/api/configuration.rb +43 -0
- data/lib/puree/api/map.rb +76 -0
- data/lib/puree/api/request.rb +116 -0
- data/lib/puree/extractor/collection.rb +131 -0
- data/lib/puree/extractor/dataset.rb +48 -0
- data/lib/puree/extractor/download.rb +71 -0
- data/lib/puree/extractor/event.rb +33 -0
- data/lib/puree/extractor/extractor.rb +10 -0
- data/lib/puree/extractor/journal.rb +29 -0
- data/lib/puree/extractor/organisation.rb +34 -0
- data/lib/puree/extractor/person.rb +32 -0
- data/lib/puree/extractor/project.rb +40 -0
- data/lib/puree/extractor/publication.rb +40 -0
- data/lib/puree/extractor/publisher.rb +27 -0
- data/lib/puree/extractor/resource.rb +69 -0
- data/lib/puree/extractor/server.rb +56 -0
- data/lib/puree/model/address.rb +50 -0
- data/lib/puree/model/copyright_license.rb +26 -0
- data/lib/puree/model/dataset.rb +84 -0
- data/lib/puree/model/download_header.rb +21 -0
- data/lib/puree/model/endeavour_person.rb +34 -0
- data/lib/puree/model/event.rb +31 -0
- data/lib/puree/model/event_header.rb +26 -0
- data/lib/puree/model/file.rb +45 -0
- data/lib/puree/model/helper/validation.rb +15 -0
- data/lib/puree/model/journal.rb +20 -0
- data/lib/puree/model/legal_condition.rb +26 -0
- data/lib/puree/model/link.rb +26 -0
- data/lib/puree/model/model.rb +7 -0
- data/lib/puree/model/organisation.rb +34 -0
- data/lib/puree/model/organisation_header.rb +34 -0
- data/lib/puree/model/person.rb +28 -0
- data/lib/puree/model/person_name.rb +52 -0
- data/lib/puree/model/project.rb +49 -0
- data/lib/puree/model/publication.rb +53 -0
- data/lib/puree/model/publication_status.rb +21 -0
- data/lib/puree/model/publisher.rb +13 -0
- data/lib/puree/model/related_content_header.rb +34 -0
- data/lib/puree/model/resource.rb +42 -0
- data/lib/puree/model/server.rb +13 -0
- data/lib/puree/model/spatial_point.rb +16 -0
- data/lib/puree/model/structure.rb +18 -0
- data/lib/puree/model/temporal_range.rb +15 -0
- data/lib/puree/util/date.rb +86 -0
- data/lib/puree/util/util.rb +8 -0
- data/lib/puree/version.rb +1 -1
- data/lib/puree/xml_extractor/base.rb +47 -0
- data/lib/puree/xml_extractor/collection.rb +40 -0
- data/lib/puree/xml_extractor/dataset.rb +305 -0
- data/lib/puree/xml_extractor/download.rb +42 -0
- data/lib/puree/xml_extractor/event.rb +63 -0
- data/lib/puree/xml_extractor/journal.rb +33 -0
- data/lib/puree/xml_extractor/organisation.rb +75 -0
- data/lib/puree/xml_extractor/person.rb +57 -0
- data/lib/puree/xml_extractor/project.rb +135 -0
- data/lib/puree/xml_extractor/publication.rb +189 -0
- data/lib/puree/xml_extractor/publisher.rb +28 -0
- data/lib/puree/xml_extractor/resource.rb +71 -0
- data/lib/puree/xml_extractor/server.rb +32 -0
- data/lib/puree/xml_extractor/shared.rb +31 -0
- data/lib/puree/xml_extractor/xml_extractor.rb +10 -0
- data/puree.gemspec +11 -8
- data/spec/download_http_spec.rb +31 -0
- data/spec/open_api_dataset_http_spec.rb +15 -0
- data/spec/resource/collection_all_http_spec.rb +77 -0
- data/spec/resource/collection_http_spec.rb +65 -0
- data/spec/resource/dataset_http_spec.rb +104 -0
- data/spec/resource/event_http_spec.rb +52 -0
- data/spec/resource/journal_http_spec.rb +36 -0
- data/spec/resource/organisation_http_spec.rb +52 -0
- data/spec/resource/person_http_spec.rb +48 -0
- data/spec/resource/project_http_spec.rb +76 -0
- data/spec/resource/publication_http_spec.rb +78 -0
- data/spec/resource/publisher_http_spec.rb +26 -0
- data/spec/server_http_spec.rb +26 -0
- data/spec/spec_helper.rb +106 -21
- metadata +110 -46
- data/lib/puree/collection.rb +0 -285
- data/lib/puree/configuration.rb +0 -15
- data/lib/puree/dataset.rb +0 -483
- data/lib/puree/date.rb +0 -63
- data/lib/puree/download.rb +0 -189
- data/lib/puree/event.rb +0 -133
- data/lib/puree/journal.rb +0 -75
- data/lib/puree/map.rb +0 -68
- data/lib/puree/organisation.rb +0 -177
- data/lib/puree/person.rb +0 -136
- data/lib/puree/project.rb +0 -231
- data/lib/puree/publication.rb +0 -258
- data/lib/puree/publisher.rb +0 -64
- data/lib/puree/resource.rb +0 -261
- data/lib/puree/server.rb +0 -156
- data/spec/collection_spec.rb +0 -62
- data/spec/dataset_spec.rb +0 -148
- data/spec/download_spec.rb +0 -33
- data/spec/event_spec.rb +0 -108
- data/spec/journal_spec.rb +0 -92
- data/spec/organisation_spec.rb +0 -112
- data/spec/person_spec.rb +0 -104
- data/spec/project_spec.rb +0 -120
- data/spec/publication_spec.rb +0 -128
- data/spec/publisher_spec.rb +0 -89
- data/spec/server_spec.rb +0 -36
data/lib/puree/configuration.rb
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data/lib/puree/dataset.rb
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module Puree
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# Dataset resource
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#
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class Dataset < Resource
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# @param base_url [String]
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# @param username [String]
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# @param password [String]
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# @param basic_auth [Boolean]
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def initialize(base_url: nil, username: nil, password: nil, basic_auth: nil)
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super(api: :dataset,
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base_url: base_url,
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username: username,
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password: password,
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basic_auth: basic_auth)
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end
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# Open access permission
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#
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# @return [String]
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def access
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@metadata['access']
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end
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# Combines project and publication
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#
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# @return [Array<Hash>]
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def associated
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@metadata['associated']
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end
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# Date made available
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#
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# @return [Hash]
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def available
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@metadata['available']
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end
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# Description
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#
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# @return [String]
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def description
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@metadata['description']
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end
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# Digital Object Identifier
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#
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# @return [String]
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def doi
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@metadata['doi']
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end
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# Supporting file
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#
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# @return [Array<Hash>]
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def file
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@metadata['file']
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end
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# Keyword
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#
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# @return [Array<String>]
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def keyword
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@metadata['keyword']
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end
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# Link
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#
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# @return [Array<Hash>]
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def link
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@metadata['link']
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end
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# Organisation
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#
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# @return [Array<Hash>]
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def organisation
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@metadata['organisation']
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end
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# Owner
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#
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# @return [Hash]
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def owner
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@metadata['owner']
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end
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# Person (internal, external, other)
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#
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# @return [Array<Hash>]
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def person
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@metadata['person']
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end
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# Date of data production
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#
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# @return [Hash]
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def production
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@metadata['production']
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end
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# Project
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#
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# @return [Array<Hash>]
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def project
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@metadata['project']
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end
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# Publication
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#
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# @return [Array<Hash>]
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def publication
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@metadata['publication']
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end
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# Publisher
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#
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# @return [String]
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def publisher
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@metadata['publisher']
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end
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# Spatial coverage (place names)
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#
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# @return [Array<String>]
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def spatial
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@metadata['spatial']
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end
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# Spatial coverage point
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#
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# @return [Hash]
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def spatial_point
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@metadata['spatial_point']
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end
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# Temporal coverage
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#
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# @return [Hash]
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def temporal
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@metadata['temporal']
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end
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# Title
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#
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# @return [String]
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def title
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@metadata['title']
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end
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# All metadata
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#
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# @return [Hash]
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def metadata
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@metadata
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end
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private
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def extract_access
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path = '/openAccessPermission/term/localizedString'
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xpath_query_for_single_value path
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end
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def extract_associated
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path = '/associatedContent//relatedContent'
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xpath_result = xpath_query path
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data_arr = []
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xpath_result.each { |i|
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data = {}
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data['type'] = i.xpath('typeClassification').text.strip
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data['title'] = i.xpath('title').text.strip
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data['uuid'] = i.attr('uuid').strip
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data_arr << data
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}
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data_arr.uniq
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end
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def extract_available
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temporal_start_date 'dateMadeAvailable'
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end
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def extract_description
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path = '/descriptions/classificationDefinedField/value/localizedString'
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xpath_query_for_single_value path
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end
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def extract_doi
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path = '/doi'
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xpath_query_for_single_value path
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end
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def extract_file
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path = '/documents/document'
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xpath_result = xpath_query path
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docs = []
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xpath_result.each do |d|
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doc = {}
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# doc['id'] = f.xpath('id').text.strip
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doc['name'] = d.xpath('fileName').text.strip
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doc['mime'] = d.xpath('mimeType').text.strip
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doc['size'] = d.xpath('size').text.strip
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doc['url'] = d.xpath('url').text.strip
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doc['title'] = d.xpath('title').text.strip
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# doc['createdDate'] = d.xpath('createdDate').text.strip
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# doc['visibleOnPortalDate'] = d.xpath('visibleOnPortalDate').text.strip
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# doc['limitedVisibility'] = d.xpath('limitedVisibility').text.strip
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license = {}
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license_name = d.xpath('documentLicense/term/localizedString').text.strip
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license['name'] = license_name
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license_url = d.xpath('documentLicense/description/localizedString').text.strip
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license['url'] = license_url
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doc['license'] = license
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docs << doc
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end
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docs.uniq
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end
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def extract_keyword
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path = '/keywordGroups/keywordGroup/keyword/userDefinedKeyword/freeKeyword'
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xpath_result = xpath_query path
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data_arr = xpath_result.map { |i| i.text.strip }
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data_arr.uniq
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end
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def extract_link
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path = '/links/link'
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xpath_result = xpath_query path
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data = []
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xpath_result.each { |i|
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o = {}
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o['url'] = i.xpath('url').text.strip
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o['description'] = i.xpath('description').text.strip
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data << o
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}
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data.uniq
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end
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def extract_organisation
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path = '/organisations/organisation'
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xpath_result = xpath_query path
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data = []
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xpath_result.each do |i|
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o = {}
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o['uuid'] = i.xpath('@uuid').text.strip
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o['name'] = i.xpath('name/localizedString').text.strip
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o['type'] = i.xpath('typeClassification/term/localizedString').text.strip
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data << o
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end
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data
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end
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def extract_owner
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path = '/managedBy'
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xpath_result = xpath_query path
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o = {}
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o['uuid'] = xpath_result.xpath('@uuid').text.strip
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o['name'] = xpath_result.xpath('name/localizedString').text.strip
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o['type'] = xpath_result.xpath('typeClassification/term/localizedString').text.strip
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o
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end
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def extract_person
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data = {}
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path = '/persons/dataSetPersonAssociation'
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xpath_result = xpath_query path
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internal = []
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external = []
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other = []
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xpath_result.each do |i|
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o = {}
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name = {}
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name['first'] = i.xpath('name/firstName').text.strip
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name['last'] = i.xpath('name/lastName').text.strip
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o['name'] = name
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roles = {
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'/dk/atira/pure/dataset/roles/dataset/contributor' => 'Contributor',
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'/dk/atira/pure/dataset/roles/dataset/creator' => 'Creator',
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'/dk/atira/pure/dataset/roles/dataset/datacollector' => 'Data Collector',
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'/dk/atira/pure/dataset/roles/dataset/datamanager' => 'Data Manager',
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'/dk/atira/pure/dataset/roles/dataset/distributor' => 'Distributor',
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'/dk/atira/pure/dataset/roles/dataset/editor' => 'Editor',
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'/dk/atira/pure/dataset/roles/dataset/funder' => 'Funder',
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'/dk/atira/pure/dataset/roles/dataset/owner' => 'Owner',
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'/dk/atira/pure/dataset/roles/dataset/other' => 'Other',
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'/dk/atira/pure/dataset/roles/dataset/producer' => 'Producer',
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'/dk/atira/pure/dataset/roles/dataset/rightsholder' => 'Rights Holder',
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'/dk/atira/pure/dataset/roles/dataset/sponsor' => 'Sponsor',
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'/dk/atira/pure/dataset/roles/dataset/supervisor' => 'Supervisor'
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}
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role_uri = i.xpath('personRole/uri').text.strip
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o['role'] = roles[role_uri].to_s
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uuid_internal = i.at_xpath('person/@uuid')
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uuid_external = i.at_xpath('externalPerson/@uuid')
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if uuid_internal
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o['uuid'] = uuid_internal.text.strip
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internal << o
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elsif uuid_external
|
308
|
-
o['uuid'] = uuid_external.text.strip
|
309
|
-
external << o
|
310
|
-
else
|
311
|
-
other << o
|
312
|
-
o['uuid'] = ''
|
313
|
-
end
|
314
|
-
end
|
315
|
-
data['internal'] = internal
|
316
|
-
data['external'] = external
|
317
|
-
data['other'] = other
|
318
|
-
data
|
319
|
-
end
|
320
|
-
|
321
|
-
def extract_production
|
322
|
-
temporal_range 'dateOfDataProduction', 'endDateOfDataProduction'
|
323
|
-
end
|
324
|
-
|
325
|
-
def extract_project
|
326
|
-
associated_type('Research').uniq
|
327
|
-
end
|
328
|
-
|
329
|
-
def extract_publication
|
330
|
-
data_arr = []
|
331
|
-
extract_associated.each do |i|
|
332
|
-
if i['type'] != 'Research'
|
333
|
-
data_arr << i
|
334
|
-
end
|
335
|
-
end
|
336
|
-
data_arr.uniq
|
337
|
-
end
|
338
|
-
|
339
|
-
def extract_publisher
|
340
|
-
path = '/publisher/name'
|
341
|
-
xpath_query_for_single_value path
|
342
|
-
end
|
343
|
-
|
344
|
-
def extract_spatial
|
345
|
-
# Data from free-form text box
|
346
|
-
path = '/geographicalCoverage/localizedString'
|
347
|
-
xpath_result = xpath_query path
|
348
|
-
data = []
|
349
|
-
xpath_result.each do |i|
|
350
|
-
data << i.text.strip
|
351
|
-
end
|
352
|
-
data
|
353
|
-
end
|
354
|
-
|
355
|
-
def extract_spatial_point
|
356
|
-
path = '/geoLocation/point'
|
357
|
-
xpath_result = xpath_query path
|
358
|
-
o = {}
|
359
|
-
if !xpath_result[0].nil?
|
360
|
-
arr = xpath_result.text.split(',')
|
361
|
-
o['latitude'] = arr[0].strip.to_f
|
362
|
-
o['longitude'] = arr[1].strip.to_f
|
363
|
-
end
|
364
|
-
o
|
365
|
-
end
|
366
|
-
|
367
|
-
def extract_temporal
|
368
|
-
temporal_range 'temporalCoverageStartDate', 'temporalCoverageEndDate'
|
369
|
-
end
|
370
|
-
|
371
|
-
def extract_title
|
372
|
-
path = '/title/localizedString'
|
373
|
-
xpath_query_for_single_value path
|
374
|
-
end
|
375
|
-
|
376
|
-
# def state
|
377
|
-
# # useful?
|
378
|
-
# data = node 'startedWorkflows'
|
379
|
-
# !data.empty? ? data['startedWorkflow']['state'] : ''
|
380
|
-
# end
|
381
|
-
|
382
|
-
def combine_metadata
|
383
|
-
o = super
|
384
|
-
o['access'] = extract_access
|
385
|
-
o['associated'] = extract_associated
|
386
|
-
o['available'] = extract_available
|
387
|
-
o['description'] = extract_description
|
388
|
-
o['doi'] = extract_doi
|
389
|
-
o['file'] = extract_file
|
390
|
-
o['keyword'] = extract_keyword
|
391
|
-
o['link'] = extract_link
|
392
|
-
o['organisation'] = extract_organisation
|
393
|
-
o['owner'] = extract_owner
|
394
|
-
o['person'] = extract_person
|
395
|
-
o['project'] = extract_project
|
396
|
-
o['production'] = extract_production
|
397
|
-
o['publication'] = extract_publication
|
398
|
-
o['publisher'] = extract_publisher
|
399
|
-
o['spatial'] = extract_spatial
|
400
|
-
o['spatial_point'] = extract_spatial_point
|
401
|
-
o['temporal'] = extract_temporal
|
402
|
-
o['title'] = extract_title
|
403
|
-
@metadata = o
|
404
|
-
end
|
405
|
-
|
406
|
-
# Assembles basic information about a person
|
407
|
-
#
|
408
|
-
# @param generic_data [Hash]
|
409
|
-
# @return [Hash]
|
410
|
-
def generic_person(generic_data)
|
411
|
-
person = {}
|
412
|
-
name = {}
|
413
|
-
name['first'] = generic_data['name']['firstName']
|
414
|
-
name['last'] = generic_data['name']['lastName']
|
415
|
-
person['name'] = name
|
416
|
-
person['role'] = generic_data['personRole']['term']['localizedString']["__content__"]
|
417
|
-
person
|
418
|
-
end
|
419
|
-
|
420
|
-
# Temporal range
|
421
|
-
#
|
422
|
-
# @return [Hash]
|
423
|
-
def temporal_range(start_node, end_node)
|
424
|
-
data = {}
|
425
|
-
data['start'] = {}
|
426
|
-
data['end'] = {}
|
427
|
-
start_date = temporal_start_date start_node
|
428
|
-
if !start_date.nil? && !start_date.empty?
|
429
|
-
data['start'] = start_date
|
430
|
-
end
|
431
|
-
end_date = temporal_end_date end_node
|
432
|
-
if !end_date.nil? && !end_date.empty?
|
433
|
-
data['end'] = end_date
|
434
|
-
end
|
435
|
-
data
|
436
|
-
end
|
437
|
-
|
438
|
-
# Temporal coverage start date
|
439
|
-
#
|
440
|
-
# @return [Hash]
|
441
|
-
def temporal_start_date(start_node)
|
442
|
-
path = "/#{start_node}"
|
443
|
-
xpath_result = xpath_query path
|
444
|
-
o = {}
|
445
|
-
o['day'] = xpath_result.xpath('day').text.strip
|
446
|
-
o['month'] = xpath_result.xpath('month').text.strip
|
447
|
-
o['year'] = xpath_result.xpath('year').text.strip
|
448
|
-
Puree::Date.normalise(o)
|
449
|
-
end
|
450
|
-
|
451
|
-
# Temporal coverage end date
|
452
|
-
#
|
453
|
-
# @return [Hash]
|
454
|
-
def temporal_end_date(end_node)
|
455
|
-
path = "/#{end_node}"
|
456
|
-
xpath_result = xpath_query path
|
457
|
-
o = {}
|
458
|
-
o['day'] = xpath_result.xpath('day').text.strip
|
459
|
-
o['month'] = xpath_result.xpath('month').text.strip
|
460
|
-
o['year'] = xpath_result.xpath('year').text.strip
|
461
|
-
Puree::Date.normalise(o)
|
462
|
-
end
|
463
|
-
|
464
|
-
# Associated type
|
465
|
-
#
|
466
|
-
# @return [Hash]
|
467
|
-
def associated_type(type)
|
468
|
-
associated_arr = extract_associated
|
469
|
-
data_arr = []
|
470
|
-
associated_arr.each do |i|
|
471
|
-
data = {}
|
472
|
-
if i['type'] === type
|
473
|
-
data['title'] = i['title']
|
474
|
-
data['uuid'] = i['uuid']
|
475
|
-
data_arr << data
|
476
|
-
end
|
477
|
-
end
|
478
|
-
data_arr
|
479
|
-
end
|
480
|
-
|
481
|
-
end
|
482
|
-
|
483
|
-
end
|