puree 0.15.0 → 0.16.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +12 -2
- data/README.md +8 -2
- data/lib/puree/collection.rb +30 -21
- data/lib/puree/configuration.rb +1 -1
- data/lib/puree/dataset.rb +235 -162
- data/lib/puree/download.rb +21 -16
- data/lib/puree/event.rb +68 -34
- data/lib/puree/journal.rb +15 -7
- data/lib/puree/organisation.rb +95 -61
- data/lib/puree/person.rb +67 -39
- data/lib/puree/project.rb +100 -55
- data/lib/puree/publication.rb +118 -63
- data/lib/puree/publisher.rb +15 -9
- data/lib/puree/resource.rb +23 -24
- data/lib/puree/server.rb +24 -16
- data/lib/puree/version.rb +1 -1
- data/puree.gemspec +1 -1
- data/spec/collection.rb +4 -4
- data/spec/dataset.rb +6 -6
- metadata +4 -4
data/lib/puree/person.rb
CHANGED
@@ -4,24 +4,70 @@ module Puree
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4
4
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#
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5
5
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class Person < Resource
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-
# @param
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# @param
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-
# @param
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-
# @param
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11
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-
def initialize(
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7
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+
# @param base_url [String]
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8
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+
# @param username [String]
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9
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+
# @param password [String]
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10
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+
# @param basic_auth [Boolean]
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11
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+
def initialize(base_url: nil, username: nil, password: nil, basic_auth: nil)
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12
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super(api: :person,
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-
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13
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+
base_url: base_url,
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username: username,
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password: password,
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basic_auth: basic_auth)
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end
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-
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-
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# Affiliation
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#
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# @return [Array<Hash>]
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def affiliation
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+
@metadata['affiliation']
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end
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+
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# Email
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#
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# @return [Array]
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def email
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@metadata['email']
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end
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# Image URL
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#
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# @return [Array<String>]
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def image
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@metadata['image']
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end
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+
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# Keyword
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#
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# @return [Array<String>]
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def keyword
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@metadata['keyword']
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end
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+
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# Name
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#
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# @return [Hash]
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+
def name
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@metadata['name']
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end
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+
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54
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+
# ORCID
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#
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# @return [String]
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def orcid
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@metadata['orcid']
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+
end
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+
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61
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# All metadata
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+
#
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# @return [Hash]
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+
def metadata
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@metadata
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+
end
|
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+
|
68
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private
|
69
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+
|
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+
def extract_affiliation
|
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path = '//organisation'
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xpath_result = xpath_query path
|
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data_arr = []
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@@ -34,10 +80,7 @@ module Puree
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data_arr.uniq
|
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end
|
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-
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-
#
|
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-
# @return [Array]
|
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-
def email
|
83
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+
def extract_email
|
41
84
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path = '//emails/classificationDefinedStringFieldExtension/value'
|
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xpath_result = xpath_query path
|
43
86
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data = []
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@@ -45,10 +88,7 @@ module Puree
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data.uniq
|
46
89
|
end
|
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90
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|
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-
|
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-
#
|
50
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-
# @return [Array<String>]
|
51
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-
def image
|
91
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+
def extract_image
|
52
92
|
path = '/photos/file/url'
|
53
93
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xpath_result = xpath_query path
|
54
94
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data = []
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@@ -56,10 +96,7 @@ module Puree
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data.uniq
|
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97
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end
|
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98
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|
59
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-
|
60
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-
#
|
61
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-
# @return [Array<String>]
|
62
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-
def keyword
|
99
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+
def extract_keyword
|
63
100
|
path = '//keywordGroup/keyword/userDefinedKeyword/freeKeyword'
|
64
101
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xpath_result = xpath_query path
|
65
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data = []
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@@ -67,10 +104,7 @@ module Puree
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data.uniq
|
68
105
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end
|
69
106
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|
70
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-
|
71
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-
#
|
72
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-
# @return [Hash]
|
73
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-
def name
|
107
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+
def extract_name
|
74
108
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path = '/name'
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75
109
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xpath_result = xpath_query path
|
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110
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first = xpath_result.xpath('firstName').text.strip
|
@@ -81,26 +115,20 @@ module Puree
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o
|
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end
|
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-
|
85
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-
#
|
86
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-
# @return [String]
|
87
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-
def orcid
|
118
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+
def extract_orcid
|
88
119
|
path = '/orcid'
|
89
120
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xpath_query_for_single_value path
|
90
121
|
end
|
91
122
|
|
92
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-
|
93
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-
#
|
94
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-
# @return [Hash]
|
95
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-
def metadata
|
123
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+
def combine_metadata
|
96
124
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o = super
|
97
|
-
o['affiliation'] =
|
98
|
-
o['email'] =
|
99
|
-
o['image'] =
|
100
|
-
o['keyword'] =
|
101
|
-
o['name'] =
|
102
|
-
o['orcid'] =
|
103
|
-
o
|
125
|
+
o['affiliation'] = extract_affiliation
|
126
|
+
o['email'] = extract_email
|
127
|
+
o['image'] = extract_image
|
128
|
+
o['keyword'] = extract_keyword
|
129
|
+
o['name'] = extract_name
|
130
|
+
o['orcid'] = extract_orcid
|
131
|
+
@metadata = o
|
104
132
|
end
|
105
133
|
|
106
134
|
end
|
data/lib/puree/project.rb
CHANGED
@@ -4,41 +4,110 @@ module Puree
|
|
4
4
|
#
|
5
5
|
class Project < Resource
|
6
6
|
|
7
|
-
# @param
|
8
|
-
# @param
|
9
|
-
# @param
|
10
|
-
# @param
|
11
|
-
def initialize(
|
7
|
+
# @param base_url [String]
|
8
|
+
# @param username [String]
|
9
|
+
# @param password [String]
|
10
|
+
# @param basic_auth [Boolean]
|
11
|
+
def initialize(base_url: nil, username: nil, password: nil, basic_auth: nil)
|
12
12
|
super(api: :project,
|
13
|
-
|
13
|
+
base_url: base_url,
|
14
14
|
username: username,
|
15
15
|
password: password,
|
16
16
|
bleeding: false,
|
17
17
|
basic_auth: basic_auth)
|
18
18
|
end
|
19
19
|
|
20
|
-
|
21
|
-
|
22
20
|
# Acronym
|
23
21
|
#
|
24
22
|
# @return [String]
|
25
23
|
def acronym
|
26
|
-
|
27
|
-
xpath_query_for_single_value path
|
24
|
+
@metadata['acronym']
|
28
25
|
end
|
29
26
|
|
30
27
|
# Description
|
31
28
|
#
|
32
29
|
# @return [String]
|
33
30
|
def description
|
34
|
-
|
35
|
-
xpath_query_for_single_value path
|
31
|
+
@metadata['description']
|
36
32
|
end
|
37
33
|
|
38
34
|
# Organisation
|
39
35
|
#
|
40
36
|
# @return [Array<Hash>]
|
41
37
|
def organisation
|
38
|
+
@metadata['organisation']
|
39
|
+
end
|
40
|
+
|
41
|
+
# Owner
|
42
|
+
#
|
43
|
+
# @return [Hash]
|
44
|
+
def owner
|
45
|
+
@metadata['owner']
|
46
|
+
end
|
47
|
+
|
48
|
+
# Person (internal, external, other)
|
49
|
+
#
|
50
|
+
# @return [Array<Hash>]
|
51
|
+
def person
|
52
|
+
@metadata['person']
|
53
|
+
end
|
54
|
+
|
55
|
+
# Status
|
56
|
+
#
|
57
|
+
# @return [String]
|
58
|
+
def status
|
59
|
+
@metadata['status']
|
60
|
+
end
|
61
|
+
|
62
|
+
# Temporal, expected and actual start and end dates as UTC datetime.
|
63
|
+
#
|
64
|
+
# @return [Hash]
|
65
|
+
def temporal
|
66
|
+
@metadata['temporal']
|
67
|
+
end
|
68
|
+
|
69
|
+
# Title
|
70
|
+
#
|
71
|
+
# @return [String]
|
72
|
+
def title
|
73
|
+
@metadata['title']
|
74
|
+
end
|
75
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+
|
76
|
+
# Type
|
77
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+
#
|
78
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+
# @return [String]
|
79
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+
def type
|
80
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+
@metadata['type']
|
81
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+
end
|
82
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+
|
83
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+
# URL
|
84
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+
#
|
85
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+
# @return [String]
|
86
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+
def url
|
87
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+
@metadata['url']
|
88
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+
end
|
89
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+
|
90
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+
# All metadata
|
91
|
+
#
|
92
|
+
# @return [Hash]
|
93
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+
def metadata
|
94
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+
@metadata
|
95
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+
end
|
96
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+
|
97
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+
|
98
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+
private
|
99
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+
|
100
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+
def extract_acronym
|
101
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+
path = '/acronym'
|
102
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+
xpath_query_for_single_value path
|
103
|
+
end
|
104
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+
|
105
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+
def extract_description
|
106
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+
path = '/description/localizedString'
|
107
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xpath_query_for_single_value path
|
108
|
+
end
|
109
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+
|
110
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+
def extract_organisation
|
42
111
|
path = '/organisations/association/organisation'
|
43
112
|
xpath_result = xpath_query path
|
44
113
|
data = []
|
@@ -52,10 +121,7 @@ module Puree
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|
52
121
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data
|
53
122
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end
|
54
123
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|
55
|
-
|
56
|
-
#
|
57
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-
# @return [Hash]
|
58
|
-
def owner
|
124
|
+
def extract_owner
|
59
125
|
path = '/owner'
|
60
126
|
xpath_result = xpath_query path
|
61
127
|
o = {}
|
@@ -65,10 +131,7 @@ module Puree
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65
131
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o
|
66
132
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end
|
67
133
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|
68
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-
|
69
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-
#
|
70
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-
# @return [Array<Hash>]
|
71
|
-
def person
|
134
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+
def extract_person
|
72
135
|
data = {}
|
73
136
|
# internal
|
74
137
|
path = '/persons/participantAssociation'
|
@@ -104,18 +167,12 @@ module Puree
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104
167
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data
|
105
168
|
end
|
106
169
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|
107
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-
|
108
|
-
#
|
109
|
-
# @return [String]
|
110
|
-
def status
|
170
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+
def extract_status
|
111
171
|
path = '/status/term/localizedString'
|
112
172
|
xpath_query_for_single_value path
|
113
173
|
end
|
114
174
|
|
115
|
-
|
116
|
-
#
|
117
|
-
# @return [Hash]
|
118
|
-
def temporal
|
175
|
+
def extract_temporal
|
119
176
|
o = {}
|
120
177
|
o['expected'] = {}
|
121
178
|
o['actual'] = {}
|
@@ -139,46 +196,34 @@ module Puree
|
|
139
196
|
o
|
140
197
|
end
|
141
198
|
|
142
|
-
|
143
|
-
#
|
144
|
-
# @return [String]
|
145
|
-
def title
|
199
|
+
def extract_title
|
146
200
|
path = '/title/localizedString'
|
147
201
|
xpath_query_for_single_value path
|
148
202
|
end
|
149
203
|
|
150
|
-
|
151
|
-
#
|
152
|
-
# @return [String]
|
153
|
-
def type
|
204
|
+
def extract_type
|
154
205
|
path = '/typeClassification/term/localizedString'
|
155
206
|
xpath_query_for_single_value path
|
156
207
|
end
|
157
208
|
|
158
|
-
|
159
|
-
#
|
160
|
-
# @return [String]
|
161
|
-
def url
|
209
|
+
def extract_url
|
162
210
|
path = '/projectURL'
|
163
211
|
xpath_query_for_single_value path
|
164
212
|
end
|
165
213
|
|
166
|
-
|
167
|
-
#
|
168
|
-
# @return [Hash]
|
169
|
-
def metadata
|
214
|
+
def combine_metadata
|
170
215
|
o = super
|
171
|
-
o['acronym'] =
|
172
|
-
o['description'] =
|
173
|
-
o['organisation'] =
|
174
|
-
o['owner'] =
|
175
|
-
o['person'] =
|
176
|
-
o['status'] =
|
177
|
-
o['temporal'] =
|
178
|
-
o['title'] =
|
179
|
-
o['type'] =
|
180
|
-
o['url'] =
|
181
|
-
o
|
216
|
+
o['acronym'] = extract_acronym
|
217
|
+
o['description'] = extract_description
|
218
|
+
o['organisation'] = extract_organisation
|
219
|
+
o['owner'] = extract_owner
|
220
|
+
o['person'] = extract_person
|
221
|
+
o['status'] = extract_status
|
222
|
+
o['temporal'] = extract_temporal
|
223
|
+
o['title'] = extract_title
|
224
|
+
o['type'] = extract_type
|
225
|
+
o['url'] = extract_url
|
226
|
+
@metadata = o
|
182
227
|
end
|
183
228
|
|
184
229
|
end
|
data/lib/puree/publication.rb
CHANGED
@@ -4,13 +4,13 @@ module Puree
|
|
4
4
|
#
|
5
5
|
class Publication < Resource
|
6
6
|
|
7
|
-
# @param
|
8
|
-
# @param
|
9
|
-
# @param
|
10
|
-
# @param
|
11
|
-
def initialize(
|
7
|
+
# @param base_url [String]
|
8
|
+
# @param username [String]
|
9
|
+
# @param password [String]
|
10
|
+
# @param basic_auth [Boolean]
|
11
|
+
def initialize(base_url: nil, username: nil, password: nil, basic_auth: nil)
|
12
12
|
super(api: :publication,
|
13
|
-
|
13
|
+
base_url: base_url,
|
14
14
|
username: username,
|
15
15
|
password: password,
|
16
16
|
basic_auth: basic_auth)
|
@@ -20,42 +20,121 @@ module Puree
|
|
20
20
|
#
|
21
21
|
# @return [String]
|
22
22
|
def category
|
23
|
-
|
24
|
-
xpath_query_for_single_value path
|
23
|
+
@metadata['category']
|
25
24
|
end
|
26
25
|
|
27
26
|
# Description
|
28
27
|
#
|
29
28
|
# @return [String]
|
30
29
|
def description
|
31
|
-
|
32
|
-
xpath_query_for_single_value path
|
30
|
+
@metadata['description']
|
33
31
|
end
|
34
32
|
|
35
33
|
# Event
|
36
34
|
#
|
37
35
|
# @return [Hash]
|
38
36
|
def event
|
39
|
-
|
40
|
-
xpath_result = xpath_query path
|
41
|
-
o = {}
|
42
|
-
o['uuid'] = xpath_result.xpath('@uuid').text.strip
|
43
|
-
o['title'] = xpath_result.xpath('title/localizedString').text.strip
|
44
|
-
o
|
37
|
+
@metadata['event']
|
45
38
|
end
|
46
39
|
|
47
40
|
# Digital Object Identifier
|
48
41
|
#
|
49
42
|
# @return [String]
|
50
43
|
def doi
|
51
|
-
|
52
|
-
xpath_query_for_single_value path
|
44
|
+
@metadata['doi']
|
53
45
|
end
|
54
46
|
|
55
47
|
# Supporting file
|
56
48
|
#
|
57
49
|
# @return [Array<Hash>]
|
58
50
|
def file
|
51
|
+
@metadata['file']
|
52
|
+
end
|
53
|
+
|
54
|
+
# Organisation
|
55
|
+
#
|
56
|
+
# @return [Array<Hash>]
|
57
|
+
def organisation
|
58
|
+
@metadata['organisation']
|
59
|
+
end
|
60
|
+
|
61
|
+
# Page
|
62
|
+
#
|
63
|
+
# @return [Array<String>]
|
64
|
+
def page
|
65
|
+
@metadata['page']
|
66
|
+
end
|
67
|
+
|
68
|
+
# Person (internal, external, other)
|
69
|
+
#
|
70
|
+
# @return [Array<Hash>]
|
71
|
+
def person
|
72
|
+
@metadata['person']
|
73
|
+
end
|
74
|
+
|
75
|
+
# Status
|
76
|
+
#
|
77
|
+
# @return [Array<Hash>]
|
78
|
+
def status
|
79
|
+
@metadata['status']
|
80
|
+
end
|
81
|
+
|
82
|
+
# Title
|
83
|
+
#
|
84
|
+
# @return [String]
|
85
|
+
def title
|
86
|
+
@metadata['title']
|
87
|
+
end
|
88
|
+
|
89
|
+
# Subtitle
|
90
|
+
#
|
91
|
+
# @return [String]
|
92
|
+
def subtitle
|
93
|
+
@metadata['subtitle']
|
94
|
+
end
|
95
|
+
|
96
|
+
# Type
|
97
|
+
#
|
98
|
+
# @return [String]
|
99
|
+
def type
|
100
|
+
@metadata['type']
|
101
|
+
end
|
102
|
+
|
103
|
+
# All metadata
|
104
|
+
#
|
105
|
+
# @return [Hash]
|
106
|
+
def metadata
|
107
|
+
@metadata
|
108
|
+
end
|
109
|
+
|
110
|
+
|
111
|
+
private
|
112
|
+
|
113
|
+
def extract_category
|
114
|
+
path = '/publicationCategory/publicationCategory/term/localizedString'
|
115
|
+
xpath_query_for_single_value path
|
116
|
+
end
|
117
|
+
|
118
|
+
def extract_description
|
119
|
+
path = '/abstract/localizedString'
|
120
|
+
xpath_query_for_single_value path
|
121
|
+
end
|
122
|
+
|
123
|
+
def extract_event
|
124
|
+
path = '/event'
|
125
|
+
xpath_result = xpath_query path
|
126
|
+
o = {}
|
127
|
+
o['uuid'] = xpath_result.xpath('@uuid').text.strip
|
128
|
+
o['title'] = xpath_result.xpath('title/localizedString').text.strip
|
129
|
+
o
|
130
|
+
end
|
131
|
+
|
132
|
+
def extract_doi
|
133
|
+
path = '//doi'
|
134
|
+
xpath_query_for_single_value path
|
135
|
+
end
|
136
|
+
|
137
|
+
def extract_file
|
59
138
|
path = '/electronicVersionAssociations/electronicVersionFileAssociations/electronicVersionFileAssociation/file'
|
60
139
|
xpath_result = xpath_query path
|
61
140
|
docs = []
|
@@ -71,10 +150,7 @@ module Puree
|
|
71
150
|
docs.uniq
|
72
151
|
end
|
73
152
|
|
74
|
-
|
75
|
-
#
|
76
|
-
# @return [Array<Hash>]
|
77
|
-
def organisation
|
153
|
+
def extract_organisation
|
78
154
|
path = '/organisations/association/organisation'
|
79
155
|
xpath_result = xpath_query path
|
80
156
|
data = []
|
@@ -88,18 +164,12 @@ module Puree
|
|
88
164
|
data
|
89
165
|
end
|
90
166
|
|
91
|
-
|
92
|
-
#
|
93
|
-
# @return [Array<String>]
|
94
|
-
def page
|
167
|
+
def extract_page
|
95
168
|
path = '/numberOfPages'
|
96
169
|
xpath_query_for_single_value path
|
97
170
|
end
|
98
171
|
|
99
|
-
|
100
|
-
#
|
101
|
-
# @return [Array<Hash>]
|
102
|
-
def person
|
172
|
+
def extract_person
|
103
173
|
data = {}
|
104
174
|
# internal
|
105
175
|
path = '/persons/personAssociation'
|
@@ -135,10 +205,7 @@ module Puree
|
|
135
205
|
data
|
136
206
|
end
|
137
207
|
|
138
|
-
|
139
|
-
#
|
140
|
-
# @return [Array<Hash>]
|
141
|
-
def status
|
208
|
+
def extract_status
|
142
209
|
path = '/publicationStatuses/publicationStatus'
|
143
210
|
xpath_result = xpath_query path
|
144
211
|
data = []
|
@@ -155,48 +222,36 @@ module Puree
|
|
155
222
|
data
|
156
223
|
end
|
157
224
|
|
158
|
-
|
159
|
-
#
|
160
|
-
# @return [String]
|
161
|
-
def title
|
225
|
+
def extract_title
|
162
226
|
path = '/title'
|
163
227
|
xpath_query_for_single_value path
|
164
228
|
end
|
165
229
|
|
166
|
-
|
167
|
-
#
|
168
|
-
# @return [String]
|
169
|
-
def subtitle
|
230
|
+
def extract_subtitle
|
170
231
|
path = '/subtitle'
|
171
232
|
xpath_query_for_single_value path
|
172
233
|
end
|
173
234
|
|
174
|
-
|
175
|
-
#
|
176
|
-
# @return [String]
|
177
|
-
def type
|
235
|
+
def extract_type
|
178
236
|
path = '/typeClassification/term/localizedString'
|
179
237
|
xpath_query_for_single_value path
|
180
238
|
end
|
181
239
|
|
182
|
-
|
183
|
-
#
|
184
|
-
# @return [Hash]
|
185
|
-
def metadata
|
240
|
+
def combine_metadata
|
186
241
|
o = super
|
187
|
-
o['category'] =
|
188
|
-
o['description'] =
|
189
|
-
o['doi'] =
|
190
|
-
o['event'] =
|
191
|
-
o['file'] =
|
192
|
-
o['organisation'] =
|
193
|
-
o['page'] =
|
194
|
-
o['person'] =
|
195
|
-
o['status'] =
|
196
|
-
o['subtitle'] =
|
197
|
-
o['title'] =
|
198
|
-
o['type'] =
|
199
|
-
o
|
242
|
+
o['category'] = extract_category
|
243
|
+
o['description'] = extract_description
|
244
|
+
o['doi'] = extract_doi
|
245
|
+
o['event'] = extract_event
|
246
|
+
o['file'] = extract_file
|
247
|
+
o['organisation'] = extract_organisation
|
248
|
+
o['page'] = extract_page
|
249
|
+
o['person'] = extract_person
|
250
|
+
o['status'] = extract_status
|
251
|
+
o['subtitle'] = extract_subtitle
|
252
|
+
o['title'] = extract_title
|
253
|
+
o['type'] = extract_type
|
254
|
+
@metadata = o
|
200
255
|
end
|
201
256
|
|
202
257
|
end
|