pubmed_search 0.2.0

data/spec/spec_helper.rb

@@ -0,0 +1,53 @@
+require 'spec'
+require 'uri'
+require 'fakeweb'
+
+$LOAD_PATH.unshift(File.dirname(__FILE__))
+$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
+require 'pubmed_search'
+
+
+
+Spec::Runner.configure do |config|
+  
+end
+
+FakeWeb.allow_net_connect = false
+
+def fake_esearch_response(search_term, options={})
+  file = options[:file] || search_term.downcase.gsub(/\W/, '_')
+  FakeWeb.register_uri(:any, "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&retmax=100000&retstart=0&term=#{URI.escape search_term}",
+                       :body => File.dirname(__FILE__) + "/responses/#{file}.xml")
+end
+
+
+class OnlyInclude
+  def initialize(entries)
+    @expected_entries = entries
+  end
+  
+  def matches?(array)
+    @array = array
+    @array.sort == @expected_entries.sort
+  end
+  
+  def description
+    "only include"
+  end
+  
+  def failure_message
+    if @expected_entries.length != @array.length
+      "expected to have #{@expected_entries.length} entries, but had #{@array.length}: #{@array.inspect}"
+    else
+      "expected #{@array.inspect} to include #{(@expected_entries - @array).inspect}"
+    end
+  end
+  
+  def negative_failure_message
+    "#{@array.inspect} expected to include other entries"
+  end
+end
+
+def only_include(*args)
+  OnlyInclude.new args
+end

metadata

@@ -0,0 +1,91 @@
+--- !ruby/object:Gem::Specification 
+name: pubmed_search
+version: !ruby/object:Gem::Version 
+  version: 0.2.0
+platform: ruby
+authors: 
+- Ryan Schenk
+autorequire: 
+bindir: bin
+cert_chain: []
+
+date: 2010-01-30 00:00:00 -05:00
+default_executable: 
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  name: rschenk-simple_uri_template
+  type: :runtime
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Requirement 
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: "0"
+    version: 
+- !ruby/object:Gem::Dependency 
+  name: nokogiri
+  type: :runtime
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Requirement 
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: "0"
+    version: 
+description: 
+email: rschenk@gmail.com
+executables: []
+
+extensions: []
+
+extra_rdoc_files: 
+- LICENSE
+- README.rdoc
+files: 
+- .document
+- .gitignore
+- LICENSE
+- README.rdoc
+- Rakefile
+- VERSION
+- lib/pubmed_search.rb
+- pubmed_search.gemspec
+- spec/pubmed_search_spec.rb
+- spec/responses/bangana_tonkinensis_cranksection.xml
+- spec/responses/biodiversity_informatics.xml
+- spec/responses/e_coli_0.xml
+- spec/responses/e_coli_1.xml
+- spec/responses/e_coli_2.xml
+- spec/responses/mus_musculus.xml
+- spec/spec_helper.rb
+has_rdoc: true
+homepage: http://github.com/rschenk/pubmed_search
+licenses: []
+
+post_install_message: 
+rdoc_options: 
+- --charset=UTF-8
+require_paths: 
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement 
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      version: "0"
+  version: 
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      version: "0"
+  version: 
+requirements: []
+
+rubyforge_project: 
+rubygems_version: 1.3.5
+signing_key: 
+specification_version: 2
+summary: A PubMed searching library with more features than BioRuby
+test_files: 
+- spec/pubmed_search_spec.rb
+- spec/spec_helper.rb