publisci 0.1.2

data/lib/vocabs/rdfs.rb

@@ -0,0 +1,17 @@
+module RDF
+  ##
+  # RDF Schema (RDFS) vocabulary.
+  #
+  # @see http://www.w3.org/TR/rdf-schema/
+  class RDFS < Vocabulary("http://www.w3.org/2000/01/rdf-schema#")
+    property :comment
+    property :domain
+    property :isDefinedBy
+    property :label
+    property :member
+    property :range
+    property :seeAlso
+    property :subClassOf
+    property :subPropertyOf
+  end
+end

data/lib/vocabs/rsa.rb

@@ -0,0 +1,12 @@
+module RDF
+  ##
+  # W3 RSA Keys (RSA) vocabulary.
+  #
+  # @see   http://www.w3.org/ns/auth/rsa#
+  # @since 0.2.0
+  class RSA < Vocabulary("http://www.w3.org/ns/auth/rsa#")
+    property :modulus
+    property :private_exponent
+    property :public_exponent
+  end
+end

data/lib/vocabs/rss.rb

@@ -0,0 +1,14 @@
+module RDF
+  ##
+  # RDF Site Summary (RSS) vocabulary.
+  #
+  # @see http://web.resource.org/rss/1.0/
+  class RSS < Vocabulary("http://purl.org/rss/1.0/")
+    property :description
+    property :items
+    property :link
+    property :name
+    property :title
+    property :url
+  end
+end

data/lib/vocabs/sioc.rb

@@ -0,0 +1,93 @@
+module RDF
+  ##
+  # Semantically-Interlinked Online Communities (SIOC) vocabulary.
+  #
+  # @see http://rdfs.org/sioc/spec/
+  class SIOC < Vocabulary("http://rdfs.org/sioc/ns#")
+    property :about
+    property :account_of
+    property :administrator_of
+    property :attachment
+    property :avatar
+    property :container_of
+    property :content
+    property :content_encoded    # @deprecated
+    property :created_at         # @deprecated
+    property :creator_of
+    property :description        # @deprecated
+    property :earlier_version
+    property :email
+    property :email_sha1
+    property :feed
+    property :first_name         # @deprecated
+    property :follows
+    property :function_of
+    property :group_of           # @deprecated
+    property :has_administrator
+    property :has_container
+    property :has_creator
+    property :has_discussion
+    property :has_function
+    property :has_group          # @deprecated
+    property :has_host
+    property :has_member
+    property :has_moderator
+    property :has_modifier
+    property :has_owner
+    property :has_parent
+    property :has_part           # @deprecated
+    property :has_reply
+    property :has_scope
+    property :has_space
+    property :has_subscriber
+    property :has_usergroup
+    property :host_of
+    property :id
+    property :ip_address
+    property :last_activity_date
+    property :last_item_date
+    property :last_name          # @deprecated
+    property :last_reply_date
+    property :later_version
+    property :latest_version
+    property :link
+    property :links_to
+    property :member_of
+    property :moderator_of
+    property :modified_at        # @deprecated
+    property :modifier_of
+    property :name
+    property :next_by_date
+    property :next_version
+    property :note
+    property :num_authors
+    property :num_items
+    property :num_replies
+    property :num_threads
+    property :num_views
+    property :owner_of
+    property :parent_of
+    property :part_of            # @deprecated
+    property :previous_by_date
+    property :previous_version
+    property :reference          # @deprecated
+    property :related_to
+    property :reply_of
+    property :scope_of
+    property :sibling
+    property :space_of
+    property :subject            # @deprecated
+    property :subscriber_of
+    property :title              # @deprecated
+    property :topic
+    property :usergroup_of
+
+    ##
+    # Semantically-Interlinked Online Communities (SIOC) types vocabulary.
+    #
+    # @see http://rdfs.org/sioc/spec/#sec-modules
+    class Types < RDF::Vocabulary("http://rdfs.org/sioc/types#")
+      # TODO
+    end
+  end
+end

data/lib/vocabs/skos.rb

@@ -0,0 +1,36 @@
+module RDF
+  ##
+  # Simple Knowledge Organization System (SKOS) vocabulary.
+  #
+  # @see http://www.w3.org/TR/skos-reference/skos.html
+  class SKOS < Vocabulary("http://www.w3.org/2004/02/skos/core#")
+    property :altLabel
+    property :broadMatch
+    property :broader
+    property :broaderTransitive
+    property :changeNote
+    property :closeMatch
+    property :definition
+    property :editorialNote
+    property :exactMatch
+    property :example
+    property :hasTopConcept
+    property :hiddenLabel
+    property :historyNote
+    property :inScheme
+    property :mappingRelation
+    property :member
+    property :memberList
+    property :narrowMatch
+    property :narrower
+    property :narrowerTransitive
+    property :notation
+    property :note
+    property :prefLabel
+    property :related
+    property :relatedMatch
+    property :scopeNote
+    property :semanticRelation
+    property :topConceptOf
+  end
+end

data/lib/vocabs/wot.rb

@@ -0,0 +1,21 @@
+module RDF
+  ##
+  # Web of Trust (WOT) vocabulary.
+  #
+  # @see http://xmlns.com/wot/0.1/
+  class WOT < Vocabulary("http://xmlns.com/wot/0.1/")
+    property :assurance
+    property :encryptedTo
+    property :encrypter
+    property :fingerprint
+    property :hasKey
+    property :hex_id
+    property :identity
+    property :length
+    property :pubkeyAddress
+    property :sigdate
+    property :signed
+    property :signer
+    property :sigtime
+  end
+end

data/lib/vocabs/xhtml.rb

@@ -0,0 +1,9 @@
+module RDF
+  ##
+  # Extensible HyperText Markup Language (XHTML) vocabulary.
+  #
+  # @see http://www.w3.org/1999/xhtml/
+  class XHTML < Vocabulary("http://www.w3.org/1999/xhtml#")
+    # TODO
+  end
+end

data/lib/vocabs/xsd.rb

@@ -0,0 +1,58 @@
+module RDF
+  ##
+  # XML Schema (XSD) vocabulary.
+  #
+  # @see http://www.w3.org/XML/Schema
+  # @see http://www.w3.org/TR/xmlschema-2/#built-in-datatypes
+  class XSD < Vocabulary("http://www.w3.org/2001/XMLSchema#")
+    # XML Schema built-in primitive types
+    # @see http://www.w3.org/TR/xmlschema-2/#built-in-primitive-datatypes
+    property :NOTATION
+    property :QName
+    property :anyURI
+    property :base64Binary
+    property :boolean
+    property :date
+    property :dateTime
+    property :decimal
+    property :double
+    property :duration
+    property :float
+    property :gDay
+    property :gMonth
+    property :gMonthDay
+    property :gYear
+    property :gYearMonth
+    property :hexBinary
+    property :string
+    property :time
+
+    # XML Schema built-in derived types
+    # @see http://www.w3.org/TR/xmlschema-2/#built-in-derived
+    property :ENTITIES
+    property :ENTITY
+    property :ID
+    property :IDREF
+    property :IDREFS
+    property :NCName
+    property :NMTOKEN
+    property :NMTOKENS
+    property :Name
+    property :byte
+    property :int
+    property :integer
+    property :language
+    property :long
+    property :negativeInteger
+    property :nonNegativeInteger
+    property :nonPositiveInteger
+    property :normalizedString
+    property :positiveInteger
+    property :short
+    property :token
+    property :unsignedByte
+    property :unsignedInt
+    property :unsignedLong
+    property :unsignedShort
+  end
+end

data/resources/maf_example.maf

@@ -0,0 +1,10 @@
+#version 2.4
+Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
+A1BG	0	genome.wustl.edu	37	19	58862784	58862784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	58862784	58862784	C	T	SNP	A1BG	NM_130786.3	human	genbank	58_37c	-1	reviewed	missense	c.883	p.A295T	0.915	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
+A1BG	0	genome.wustl.edu	37	19	58864366	58864366	+	Missense_Mutation	SNP	G	G	A	rs151098196	byFrequency	TCGA-E9-A1NH-01A-11D-A14G-09	TCGA-E9-A1NH-11A-33D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	13c312ec-0add-4758-ab8d-c193e2e08c6d	0ee95056-a7cc-415c-a487-3ad08604dfc0	19	58864366	58864366	G	A	SNP	A1BG	NM_130786.3	human	genbank	58_37c	-1	reviewed	missense	c.268	p.R90C	0.950	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
+A1CF	29974	genome.wustl.edu	37	10	52595854	52595854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BH-A0HP-01A-12D-A099-09	TCGA-BH-A0HP-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2	8c059d33-23de-439a-914a-290527c5efbe	10	52595854	52595854	G	A	SNP	A1CF	NM_138932.1	human	genbank	58_37c	-1	reviewed	missense	c.584	p.A195V	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_dsRNA-binding domain-like,superfamily_RNA-binding domain RBD	-	no_errors
+A1CF	29974	genome.wustl.edu	37	10	52595937	52595937	+	Silent	SNP	G	G	A	novel		TCGA-BH-A18P-01A-11D-A12B-09	TCGA-BH-A18P-11A-43D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	add624a3-57e9-46be-9bcc-3e53d7c2dfb7	5cae8dca-b28a-4483-9c03-6f0645161c04	10	52595937	52595937	G	A	SNP	A1CF	NM_138932.1	human	genbank	58_37c	-1	reviewed	silent	c.501	p.I167	0.615	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_dsRNA-binding domain-like,superfamily_RNA-binding domain RBD	-	no_errors
+A2BP1	0	genome.wustl.edu	37	16	7568361	7568361	+	Silent	SNP	G	G	C	novel		TCGA-D8-A1JN-01A-11D-A13L-09	TCGA-D8-A1JN-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c83c7d48-8671-4f27-b3dd-05411fa2f784	c14cac2a-e308-44fa-b1af-ee51511ee0ee	16	7568361	7568361	G	C	SNP	A2BP1	NM_145891.2	human	genbank	58_37c	+1	reviewed	silent	c.300	p.T100	0.995	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
+A2BP1	54715	genome.wustl.edu	37	16	7102099	7102099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Illumina_WXS_gDNA	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	16	7102099	7102099	G	T	SNP	A2BP1	NM_001142334.1	human	genbank	58_37c	+1	reviewed	missense	c.27	p.R9S	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
+A2BP1	54715	genome.wustl.edu	37	16	7383011	7383011	+	Silent	SNP	G	G	A	novel		TCGA-AR-A1AJ-01A-21D-A12Q-09	TCGA-AR-A1AJ-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Illumina_WXS_gDNA	1	dbGAP	Illumina GAIIx	4e1f9084-4729-4b3f-b036-6226d64fd25b	63ee3781-4578-4d19-88e4-c8785fc7987e	16	7383011	7383011	G	A	SNP	A2BP1	NM_145891.2	human	genbank	58_37c	+1	reviewed	silent	c.9	p.A3	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
+A2M	2	genome.wustl.edu	37	12	9251298	9251298	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A8-A08G-01A-11W-A019-09	TCGA-A8-A08G-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Illumina_WXS_gDNA	1	dbGAP	Illumina GAIIx	8da61928-e935-4a33-8e46-840e637163d7	74a3a4af-c93a-4fcd-af11-1f5eeb847c3c	12	9251298	9251298	G	A	SNP	A2M	NM_000014.4	human	genbank	58_37c	-1	reviewed	nonsense	c.1756	p.R586*	0.003	HMMPfam_A2M_N_2	HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors

data/resources/maf_rdf.ttl

@@ -0,0 +1,1173 @@
+@base <http://onto.strinz.me/dc/dataset/maf_example/> .
+@prefix ns:    <http://onto.strinz.me/dc/dataset/maf_example/> .
+@prefix qb:    <http://purl.org/linked-data/cube#> .
+@prefix rdf:   <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
+@prefix rdfs:  <http://www.w3.org/2000/01/rdf-schema#> .
+@prefix prop:  <http://onto.strinz.me/properties/> .
+@prefix dct:   <http://purl.org/dc/terms/> .
+@prefix xsd:   <http://www.w3.org/2001/XMLSchema#> .
+@prefix cs:    <http://onto.strinz.me/dc/dataset/maf_example/cs/> .
+@prefix code:  <http://onto.strinz.me/dc/dataset/maf_example/code/> .
+@prefix owl:   <http://www.w3.org/2002/07/owl#> .
+@prefix skos:  <http://www.w3.org/2004/02/skos/core#> .
+@prefix foaf:     <http://xmlns.com/foaf/0.1/> .
+@prefix org:      <http://www.w3.org/ns/org#> .
+@prefix prov:     <http://www.w3.org/ns/prov#> .
+
+ns:dsd-maf_example a qb:DataStructureDefinition;
+  qb:component cs:Variant_Classification ;
+  qb:component cs:Variant_Type ;
+  qb:component cs:dbSNP_Val_Status ;
+  qb:component cs:Verification_Status ;
+  qb:component cs:Validation_Status ;
+  qb:component cs:Mutation_Status ;
+  qb:component cs:Sequence_Source ;
+  qb:component cs:Sequencer ;
+  qb:component cs:Hugo_Symbol ;
+  qb:component cs:Entrez_Gene_Id ;
+  qb:component cs:Center ;
+  qb:component cs:NCBI_Build ;
+  qb:component cs:Chromosome ;
+  qb:component cs:Start_Position ;
+  qb:component cs:End_Position ;
+  qb:component cs:Strand ;
+  qb:component cs:Reference_Allele ;
+  qb:component cs:Tumor_Seq_Allele1 ;
+  qb:component cs:Tumor_Seq_Allele2 ;
+  qb:component cs:dbSNP_RS ;
+  qb:component cs:Tumor_Sample_Barcode ;
+  qb:component cs:Matched_Norm_Sample_Barcode ;
+  qb:component cs:Match_Norm_Seq_Allele1 ;
+  qb:component cs:Match_Norm_Seq_Allele2 ;
+  qb:component cs:Tumor_Validation_Allele1 ;
+  qb:component cs:Tumor_Validation_Allele2 ;
+  qb:component cs:Match_Norm_Validation_Allele1 ;
+  qb:component cs:Match_Norm_Validation_Allele2 ;
+  qb:component cs:Sequencing_Phase ;
+  qb:component cs:Validation_Method ;
+  qb:component cs:Score ;
+  qb:component cs:BAM_File ;
+  qb:component cs:Tumor_Sample_UUID ;
+  qb:component cs:Matched_Norm_Sample_UUID ;
+  qb:component cs:patient_id ;
+  qb:component cs:sample_id .
+
+ns:dataset-maf_example a qb:DataSet ;
+  rdfs:label "maf_example"@en ;
+  qb:structure ns:dsd-maf_example .
+
+cs:Variant_Classification a qb:ComponentSpecification ;
+  rdfs:label "Variant_Classification" ;
+  qb:dimension prop:Variant_Classification .
+
+cs:Variant_Type a qb:ComponentSpecification ;
+  rdfs:label "Variant_Type" ;
+  qb:dimension prop:Variant_Type .
+
+cs:dbSNP_Val_Status a qb:ComponentSpecification ;
+  rdfs:label "dbSNP_Val_Status" ;
+  qb:dimension prop:dbSNP_Val_Status .
+
+cs:Verification_Status a qb:ComponentSpecification ;
+  rdfs:label "Verification_Status" ;
+  qb:dimension prop:Verification_Status .
+
+cs:Validation_Status a qb:ComponentSpecification ;
+  rdfs:label "Validation_Status" ;
+  qb:dimension prop:Validation_Status .
+
+cs:Mutation_Status a qb:ComponentSpecification ;
+  rdfs:label "Mutation_Status" ;
+  qb:dimension prop:Mutation_Status .
+
+cs:Sequence_Source a qb:ComponentSpecification ;
+  rdfs:label "Sequence_Source" ;
+  qb:dimension prop:Sequence_Source .
+
+cs:Sequencer a qb:ComponentSpecification ;
+  rdfs:label "Sequencer" ;
+  qb:dimension prop:Sequencer .
+
+cs:Hugo_Symbol a qb:ComponentSpecification ;
+  rdfs:label "Hugo_Symbol" ;
+  qb:measure prop:Hugo_Symbol .
+
+cs:Entrez_Gene_Id a qb:ComponentSpecification ;
+  rdfs:label "Entrez_Gene_Id" ;
+  qb:measure prop:Entrez_Gene_Id .
+
+cs:Center a qb:ComponentSpecification ;
+  rdfs:label "Center" ;
+  qb:measure prop:Center .
+
+cs:NCBI_Build a qb:ComponentSpecification ;
+  rdfs:label "NCBI_Build" ;
+  qb:measure prop:NCBI_Build .
+
+cs:Chromosome a qb:ComponentSpecification ;
+  rdfs:label "Chromosome" ;
+  qb:measure prop:Chromosome .
+
+cs:Start_Position a qb:ComponentSpecification ;
+  rdfs:label "Start_Position" ;
+  qb:measure prop:Start_Position .
+
+cs:End_Position a qb:ComponentSpecification ;
+  rdfs:label "End_Position" ;
+  qb:measure prop:End_Position .
+
+cs:Strand a qb:ComponentSpecification ;
+  rdfs:label "Strand" ;
+  qb:measure prop:Strand .
+
+cs:Reference_Allele a qb:ComponentSpecification ;
+  rdfs:label "Reference_Allele" ;
+  qb:measure prop:Reference_Allele .
+
+cs:Tumor_Seq_Allele1 a qb:ComponentSpecification ;
+  rdfs:label "Tumor_Seq_Allele1" ;
+  qb:measure prop:Tumor_Seq_Allele1 .
+
+cs:Tumor_Seq_Allele2 a qb:ComponentSpecification ;
+  rdfs:label "Tumor_Seq_Allele2" ;
+  qb:measure prop:Tumor_Seq_Allele2 .
+
+cs:dbSNP_RS a qb:ComponentSpecification ;
+  rdfs:label "dbSNP_RS" ;
+  qb:measure prop:dbSNP_RS .
+
+cs:Tumor_Sample_Barcode a qb:ComponentSpecification ;
+  rdfs:label "Tumor_Sample_Barcode" ;
+  qb:measure prop:Tumor_Sample_Barcode .
+
+cs:Matched_Norm_Sample_Barcode a qb:ComponentSpecification ;
+  rdfs:label "Matched_Norm_Sample_Barcode" ;
+  qb:measure prop:Matched_Norm_Sample_Barcode .
+
+cs:Match_Norm_Seq_Allele1 a qb:ComponentSpecification ;
+  rdfs:label "Match_Norm_Seq_Allele1" ;
+  qb:measure prop:Match_Norm_Seq_Allele1 .
+
+cs:Match_Norm_Seq_Allele2 a qb:ComponentSpecification ;
+  rdfs:label "Match_Norm_Seq_Allele2" ;
+  qb:measure prop:Match_Norm_Seq_Allele2 .
+
+cs:Tumor_Validation_Allele1 a qb:ComponentSpecification ;
+  rdfs:label "Tumor_Validation_Allele1" ;
+  qb:measure prop:Tumor_Validation_Allele1 .
+
+cs:Tumor_Validation_Allele2 a qb:ComponentSpecification ;
+  rdfs:label "Tumor_Validation_Allele2" ;
+  qb:measure prop:Tumor_Validation_Allele2 .
+
+cs:Match_Norm_Validation_Allele1 a qb:ComponentSpecification ;
+  rdfs:label "Match_Norm_Validation_Allele1" ;
+  qb:measure prop:Match_Norm_Validation_Allele1 .
+
+cs:Match_Norm_Validation_Allele2 a qb:ComponentSpecification ;
+  rdfs:label "Match_Norm_Validation_Allele2" ;
+  qb:measure prop:Match_Norm_Validation_Allele2 .
+
+cs:Sequencing_Phase a qb:ComponentSpecification ;
+  rdfs:label "Sequencing_Phase" ;
+  qb:measure prop:Sequencing_Phase .
+
+cs:Validation_Method a qb:ComponentSpecification ;
+  rdfs:label "Validation_Method" ;
+  qb:measure prop:Validation_Method .
+
+cs:Score a qb:ComponentSpecification ;
+  rdfs:label "Score" ;
+  qb:measure prop:Score .
+
+cs:BAM_File a qb:ComponentSpecification ;
+  rdfs:label "BAM_File" ;
+  qb:measure prop:BAM_File .
+
+cs:Tumor_Sample_UUID a qb:ComponentSpecification ;
+  rdfs:label "Tumor_Sample_UUID" ;
+  qb:measure prop:Tumor_Sample_UUID .
+
+cs:Matched_Norm_Sample_UUID a qb:ComponentSpecification ;
+  rdfs:label "Matched_Norm_Sample_UUID" ;
+  qb:measure prop:Matched_Norm_Sample_UUID .
+
+cs:patient_id a qb:ComponentSpecification ;
+  rdfs:label "patient_id" ;
+  qb:measure prop:patient_id .
+
+cs:sample_id a qb:ComponentSpecification ;
+  rdfs:label "sample_id" ;
+  qb:measure prop:sample_id .
+
+prop:Hugo_Symbol a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Hugo_Symbol"@en .
+
+prop:Entrez_Gene_Id a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Entrez_Gene_Id"@en .
+
+prop:Center a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Center"@en ;
+  rdfs:range xsd:string .
+
+prop:NCBI_Build a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "NCBI_Build"@en ;
+  rdfs:range xsd:int .
+
+prop:Chromosome a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Chromosome"@en ;
+  rdfs:range xsd:int .
+
+prop:Start_Position a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Start_Position"@en .
+
+prop:End_Position a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "End_Position"@en .
+
+prop:Strand a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Strand"@en .
+
+prop:Reference_Allele a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Reference_Allele"@en .
+
+prop:Tumor_Seq_Allele1 a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Tumor_Seq_Allele1"@en .
+
+prop:Tumor_Seq_Allele2 a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Tumor_Seq_Allele2"@en .
+
+prop:dbSNP_RS a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "dbSNP_RS"@en .
+
+prop:Tumor_Sample_Barcode a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Tumor_Sample_Barcode"@en ;
+  rdfs:range xsd:string .
+
+prop:Matched_Norm_Sample_Barcode a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Matched_Norm_Sample_Barcode"@en .
+
+prop:Match_Norm_Seq_Allele1 a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Match_Norm_Seq_Allele1"@en .
+
+prop:Match_Norm_Seq_Allele2 a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Match_Norm_Seq_Allele2"@en .
+
+prop:Tumor_Validation_Allele1 a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Tumor_Validation_Allele1"@en .
+
+prop:Tumor_Validation_Allele2 a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Tumor_Validation_Allele2"@en .
+
+prop:Match_Norm_Validation_Allele1 a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Match_Norm_Validation_Allele1"@en .
+
+prop:Match_Norm_Validation_Allele2 a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Match_Norm_Validation_Allele2"@en .
+
+prop:Sequencing_Phase a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Sequencing_Phase"@en .
+
+prop:Validation_Method a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Validation_Method"@en .
+
+prop:Score a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Score"@en .
+
+prop:BAM_File a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "BAM_File"@en .
+
+prop:Tumor_Sample_UUID a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Tumor_Sample_UUID"@en .
+
+prop:Matched_Norm_Sample_UUID a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "Matched_Norm_Sample_UUID"@en .
+
+prop:patient_id a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "patient_id"@en .
+
+prop:sample_id a rdf:Property, qb:MeasureProperty ;
+  rdfs:label "sample_id"@en .
+
+prop:Variant_Classification a rdf:Property, qb:DimensionProperty ;
+  rdfs:label "Variant_Classification"@en ;
+  qb:codeList code:variant_classification ;
+  rdfs:range code:Variant_classification .
+
+prop:Variant_Type a rdf:Property, qb:DimensionProperty ;
+  rdfs:label "Variant_Type"@en ;
+  qb:codeList code:variant_type ;
+  rdfs:range code:Variant_type .
+
+prop:dbSNP_Val_Status a rdf:Property, qb:DimensionProperty ;
+  rdfs:label "dbSNP_Val_Status"@en ;
+  qb:codeList code:dbsnp_val_status ;
+  rdfs:range code:Dbsnp_val_status .
+
+prop:Verification_Status a rdf:Property, qb:DimensionProperty ;
+  rdfs:label "Verification_Status"@en ;
+  qb:codeList code:verification_status ;
+  rdfs:range code:Verification_status .
+
+prop:Validation_Status a rdf:Property, qb:DimensionProperty ;
+  rdfs:label "Validation_Status"@en ;
+  qb:codeList code:validation_status ;
+  rdfs:range code:Validation_status .
+
+prop:Mutation_Status a rdf:Property, qb:DimensionProperty ;
+  rdfs:label "Mutation_Status"@en ;
+  qb:codeList code:mutation_status ;
+  rdfs:range code:Mutation_status .
+
+prop:Sequence_Source a rdf:Property, qb:DimensionProperty ;
+  rdfs:label "Sequence_Source"@en ;
+  qb:codeList code:sequence_source ;
+  rdfs:range code:Sequence_source .
+
+prop:Sequencer a rdf:Property, qb:DimensionProperty ;
+  rdfs:label "Sequencer"@en ;
+  qb:codeList code:sequencer ;
+  rdfs:range code:Sequencer .
+
+code:Variant_classification a rdfs:Class, owl:Class;
+  rdfs:subClassOf skos:Concept ;
+  rdfs:label "Code list for variant_classification - codelist class"@en;
+  rdfs:comment "Specifies the variant_classification for each observation";
+  rdfs:seeAlso code:variant_classification .
+
+code:variant_classification a skos:ConceptScheme;
+  skos:prefLabel "Code list for variant_classification - codelist scheme"@en;
+  rdfs:label "Code list for variant_classification - codelist scheme"@en;
+  skos:notation "CL_VARIANT_CLASSIFICATION";
+  skos:note "Specifies the variant_classification for each observation";
+  skos:hasTopConcept <code/variant_classification/Frame_Shift_Del> ;
+  skos:hasTopConcept <code/variant_classification/Frame_Shift_Ins> ;
+  skos:hasTopConcept <code/variant_classification/In_Frame_Del> ;
+  skos:hasTopConcept <code/variant_classification/In_Frame_Ins> ;
+  skos:hasTopConcept <code/variant_classification/Missense_Mutation> ;
+  skos:hasTopConcept <code/variant_classification/Nonsense_Mutation> ;
+  skos:hasTopConcept <code/variant_classification/Silent> ;
+  skos:hasTopConcept <code/variant_classification/Splice_Site> ;
+  skos:hasTopConcept <code/variant_classification/Translation_Start_Site> ;
+  skos:hasTopConcept <code/variant_classification/Nonstop_Mutation> ;
+  skos:hasTopConcept <code/variant_classification/3'UTR> ;
+  skos:hasTopConcept <code/variant_classification/3'Flank> ;
+  skos:hasTopConcept <code/variant_classification/5'UTR> ;
+  skos:hasTopConcept <code/variant_classification/5'Flank> ;
+  skos:hasTopConcept <code/variant_classification/IGR1> ;
+  skos:hasTopConcept <code/variant_classification/Intron> ;
+  skos:hasTopConcept <code/variant_classification/RNA> ;
+  skos:hasTopConcept <code/variant_classification/Targeted_Region> ;
+  .
+
+code:Variant_type a rdfs:Class, owl:Class;
+  rdfs:subClassOf skos:Concept ;
+  rdfs:label "Code list for variant_type - codelist class"@en;
+  rdfs:comment "Specifies the variant_type for each observation";
+  rdfs:seeAlso code:variant_type .
+
+code:variant_type a skos:ConceptScheme;
+  skos:prefLabel "Code list for variant_type - codelist scheme"@en;
+  rdfs:label "Code list for variant_type - codelist scheme"@en;
+  skos:notation "CL_VARIANT_TYPE";
+  skos:note "Specifies the variant_type for each observation";
+  skos:hasTopConcept <code/variant_type/SNP> ;
+  skos:hasTopConcept <code/variant_type/DNP> ;
+  skos:hasTopConcept <code/variant_type/TNP> ;
+  skos:hasTopConcept <code/variant_type/ONP> ;
+  skos:hasTopConcept <code/variant_type/INS> ;
+  skos:hasTopConcept <code/variant_type/DEL> ;
+  skos:hasTopConcept <code/variant_type/Consolidated> ;
+  .
+
+code:Dbsnp_val_status a rdfs:Class, owl:Class;
+  rdfs:subClassOf skos:Concept ;
+  rdfs:label "Code list for dbsnp_val_status - codelist class"@en;
+  rdfs:comment "Specifies the dbsnp_val_status for each observation";
+  rdfs:seeAlso code:dbsnp_val_status .
+
+code:dbsnp_val_status a skos:ConceptScheme;
+  skos:prefLabel "Code list for dbsnp_val_status - codelist scheme"@en;
+  rdfs:label "Code list for dbsnp_val_status - codelist scheme"@en;
+  skos:notation "CL_DBSNP_VAL_STATUS";
+  skos:note "Specifies the dbsnp_val_status for each observation";
+  skos:hasTopConcept <code/dbsnp_val_status/by1000genomes> ;
+  skos:hasTopConcept <code/dbsnp_val_status/by2Hit2Allele> ;
+  skos:hasTopConcept <code/dbsnp_val_status/byCluster> ;
+  skos:hasTopConcept <code/dbsnp_val_status/byFrequency> ;
+  skos:hasTopConcept <code/dbsnp_val_status/byHapMap> ;
+  skos:hasTopConcept <code/dbsnp_val_status/byOtherPop> ;
+  skos:hasTopConcept <code/dbsnp_val_status/bySubmitter> ;
+  skos:hasTopConcept <code/dbsnp_val_status/alternate_allele> ;
+  .
+
+code:Verification_status a rdfs:Class, owl:Class;
+  rdfs:subClassOf skos:Concept ;
+  rdfs:label "Code list for verification_status - codelist class"@en;
+  rdfs:comment "Specifies the verification_status for each observation";
+  rdfs:seeAlso code:verification_status .
+
+code:verification_status a skos:ConceptScheme;
+  skos:prefLabel "Code list for verification_status - codelist scheme"@en;
+  rdfs:label "Code list for verification_status - codelist scheme"@en;
+  skos:notation "CL_VERIFICATION_STATUS";
+  skos:note "Specifies the verification_status for each observation";
+  skos:hasTopConcept <code/verification_status/Verified,> ;
+  skos:hasTopConcept <code/verification_status/Unknown> ;
+  .
+
+code:Validation_status a rdfs:Class, owl:Class;
+  rdfs:subClassOf skos:Concept ;
+  rdfs:label "Code list for validation_status - codelist class"@en;
+  rdfs:comment "Specifies the validation_status for each observation";
+  rdfs:seeAlso code:validation_status .
+
+code:validation_status a skos:ConceptScheme;
+  skos:prefLabel "Code list for validation_status - codelist scheme"@en;
+  rdfs:label "Code list for validation_status - codelist scheme"@en;
+  skos:notation "CL_VALIDATION_STATUS";
+  skos:note "Specifies the validation_status for each observation";
+  skos:hasTopConcept <code/validation_status/Untested> ;
+  skos:hasTopConcept <code/validation_status/Inconclusive> ;
+  skos:hasTopConcept <code/validation_status/Valid> ;
+  skos:hasTopConcept <code/validation_status/Invalid> ;
+  .
+
+code:Mutation_status a rdfs:Class, owl:Class;
+  rdfs:subClassOf skos:Concept ;
+  rdfs:label "Code list for mutation_status - codelist class"@en;
+  rdfs:comment "Specifies the mutation_status for each observation";
+  rdfs:seeAlso code:mutation_status .
+
+code:mutation_status a skos:ConceptScheme;
+  skos:prefLabel "Code list for mutation_status - codelist scheme"@en;
+  rdfs:label "Code list for mutation_status - codelist scheme"@en;
+  skos:notation "CL_MUTATION_STATUS";
+  skos:note "Specifies the mutation_status for each observation";
+  skos:hasTopConcept <code/mutation_status/None> ;
+  skos:hasTopConcept <code/mutation_status/Germline> ;
+  skos:hasTopConcept <code/mutation_status/Somatic> ;
+  skos:hasTopConcept <code/mutation_status/LOH> ;
+  skos:hasTopConcept <code/mutation_status/Post-transcriptional> ;
+  skos:hasTopConcept <code/mutation_status/modification> ;
+  skos:hasTopConcept <code/mutation_status/Unknown> ;
+  .
+
+code:Sequence_source a rdfs:Class, owl:Class;
+  rdfs:subClassOf skos:Concept ;
+  rdfs:label "Code list for sequence_source - codelist class"@en;
+  rdfs:comment "Specifies the sequence_source for each observation";
+  rdfs:seeAlso code:sequence_source .
+
+code:sequence_source a skos:ConceptScheme;
+  skos:prefLabel "Code list for sequence_source - codelist scheme"@en;
+  rdfs:label "Code list for sequence_source - codelist scheme"@en;
+  skos:notation "CL_SEQUENCE_SOURCE";
+  skos:note "Specifies the sequence_source for each observation";
+  skos:hasTopConcept <code/sequence_source/WGS> ;
+  skos:hasTopConcept <code/sequence_source/WGA> ;
+  skos:hasTopConcept <code/sequence_source/WXS> ;
+  skos:hasTopConcept <code/sequence_source/RNA-Seq> ;
+  skos:hasTopConcept <code/sequence_source/miRNA-Seq> ;
+  skos:hasTopConcept <code/sequence_source/Bisulfite-Seq> ;
+  skos:hasTopConcept <code/sequence_source/VALIDATION> ;
+  skos:hasTopConcept <code/sequence_source/Other> ;
+  skos:hasTopConcept <code/sequence_source/ncRNA-Seq> ;
+  skos:hasTopConcept <code/sequence_source/WCS> ;
+  skos:hasTopConcept <code/sequence_source/CLONE> ;
+  skos:hasTopConcept <code/sequence_source/POOLCLONE> ;
+  skos:hasTopConcept <code/sequence_source/AMPLICON> ;
+  skos:hasTopConcept <code/sequence_source/CLONEEND> ;
+  skos:hasTopConcept <code/sequence_source/FINISHING> ;
+  skos:hasTopConcept <code/sequence_source/ChIP-Seq> ;
+  skos:hasTopConcept <code/sequence_source/MNase-Seq> ;
+  skos:hasTopConcept <code/sequence_source/DNase-Hypersensitivity> ;
+  skos:hasTopConcept <code/sequence_source/EST> ;
+  skos:hasTopConcept <code/sequence_source/FL-cDNA> ;
+  skos:hasTopConcept <code/sequence_source/CTS> ;
+  skos:hasTopConcept <code/sequence_source/MRE-Seq> ;
+  skos:hasTopConcept <code/sequence_source/MeDIP-Seq> ;
+  skos:hasTopConcept <code/sequence_source/MBD-Seq> ;
+  skos:hasTopConcept <code/sequence_source/Tn-Seq> ;
+  skos:hasTopConcept <code/sequence_source/FAIRE-seq> ;
+  skos:hasTopConcept <code/sequence_source/SELEX> ;
+  skos:hasTopConcept <code/sequence_source/RIP-Seq> ;
+  skos:hasTopConcept <code/sequence_source/ChIA-PET> ;
+  .
+
+code:Sequencer a rdfs:Class, owl:Class;
+  rdfs:subClassOf skos:Concept ;
+  rdfs:label "Code list for sequencer - codelist class"@en;
+  rdfs:comment "Specifies the sequencer for each observation";
+  rdfs:seeAlso code:sequencer .
+
+code:sequencer a skos:ConceptScheme;
+  skos:prefLabel "Code list for sequencer - codelist scheme"@en;
+  rdfs:label "Code list for sequencer - codelist scheme"@en;
+  skos:notation "CL_SEQUENCER";
+  skos:note "Specifies the sequencer for each observation";
+  skos:hasTopConcept <code/sequencer/Illumina_GAIIx> ;
+  skos:hasTopConcept <code/sequencer/Illumina_HiSeq> ;
+  skos:hasTopConcept <code/sequencer/SOLID> ;
+  skos:hasTopConcept <code/sequencer/454> ;
+  skos:hasTopConcept <code/sequencer/ABI_3730xl> ;
+  skos:hasTopConcept <code/sequencer/Ion_Torrent_PGM> ;
+  skos:hasTopConcept <code/sequencer/Ion_Torrent_Proton> ;
+  skos:hasTopConcept <code/sequencer/PacBio_RS> ;
+  skos:hasTopConcept <code/sequencer/Illumina_MiSeq> ;
+  skos:hasTopConcept <code/sequencer/Illumina_HiSeq_2500> ;
+  skos:hasTopConcept <code/sequencer/454_GS_FLX_Titanium> ;
+  skos:hasTopConcept <code/sequencer/AB_SOLiD_4_System> ;
+  .
+
+<code/variant_classification/Frame_Shift_Del> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "Frame_Shift_Del" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/Frame_Shift_Ins> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "Frame_Shift_Ins" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/In_Frame_Del> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "In_Frame_Del" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/In_Frame_Ins> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "In_Frame_Ins" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/Missense_Mutation> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "Missense_Mutation" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/Nonsense_Mutation> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "Nonsense_Mutation" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/Silent> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "Silent" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/Splice_Site> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "Splice_Site" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/Translation_Start_Site> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "Translation_Start_Site" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/Nonstop_Mutation> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "Nonstop_Mutation" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/3'UTR> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "3'UTR" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/3'Flank> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "3'Flank" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/5'UTR> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "5'UTR" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/5'Flank> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "5'Flank" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/IGR1> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "IGR1" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/Intron> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "Intron" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/RNA> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "RNA" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_classification/Targeted_Region> a skos:Concept, code:Variant_classification;
+  skos:topConceptOf code:variant_classification ;
+  skos:prefLabel "Targeted_Region" ;
+  skos:inScheme code:variant_classification .
+
+<code/variant_type/SNP> a skos:Concept, code:Variant_type;
+  skos:topConceptOf code:variant_type ;
+  skos:prefLabel "SNP" ;
+  skos:inScheme code:variant_type .
+
+<code/variant_type/DNP> a skos:Concept, code:Variant_type;
+  skos:topConceptOf code:variant_type ;
+  skos:prefLabel "DNP" ;
+  skos:inScheme code:variant_type .
+
+<code/variant_type/TNP> a skos:Concept, code:Variant_type;
+  skos:topConceptOf code:variant_type ;
+  skos:prefLabel "TNP" ;
+  skos:inScheme code:variant_type .
+
+<code/variant_type/ONP> a skos:Concept, code:Variant_type;
+  skos:topConceptOf code:variant_type ;
+  skos:prefLabel "ONP" ;
+  skos:inScheme code:variant_type .
+
+<code/variant_type/INS> a skos:Concept, code:Variant_type;
+  skos:topConceptOf code:variant_type ;
+  skos:prefLabel "INS" ;
+  skos:inScheme code:variant_type .
+
+<code/variant_type/DEL> a skos:Concept, code:Variant_type;
+  skos:topConceptOf code:variant_type ;
+  skos:prefLabel "DEL" ;
+  skos:inScheme code:variant_type .
+
+<code/variant_type/Consolidated> a skos:Concept, code:Variant_type;
+  skos:topConceptOf code:variant_type ;
+  skos:prefLabel "Consolidated" ;
+  skos:inScheme code:variant_type .
+
+<code/dbsnp_val_status/by1000genomes> a skos:Concept, code:Dbsnp_val_status;
+  skos:topConceptOf code:dbsnp_val_status ;
+  skos:prefLabel "by1000genomes" ;
+  skos:inScheme code:dbsnp_val_status .
+
+<code/dbsnp_val_status/by2Hit2Allele> a skos:Concept, code:Dbsnp_val_status;
+  skos:topConceptOf code:dbsnp_val_status ;
+  skos:prefLabel "by2Hit2Allele" ;
+  skos:inScheme code:dbsnp_val_status .
+
+<code/dbsnp_val_status/byCluster> a skos:Concept, code:Dbsnp_val_status;
+  skos:topConceptOf code:dbsnp_val_status ;
+  skos:prefLabel "byCluster" ;
+  skos:inScheme code:dbsnp_val_status .
+
+<code/dbsnp_val_status/byFrequency> a skos:Concept, code:Dbsnp_val_status;
+  skos:topConceptOf code:dbsnp_val_status ;
+  skos:prefLabel "byFrequency" ;
+  skos:inScheme code:dbsnp_val_status .
+
+<code/dbsnp_val_status/byHapMap> a skos:Concept, code:Dbsnp_val_status;
+  skos:topConceptOf code:dbsnp_val_status ;
+  skos:prefLabel "byHapMap" ;
+  skos:inScheme code:dbsnp_val_status .
+
+<code/dbsnp_val_status/byOtherPop> a skos:Concept, code:Dbsnp_val_status;
+  skos:topConceptOf code:dbsnp_val_status ;
+  skos:prefLabel "byOtherPop" ;
+  skos:inScheme code:dbsnp_val_status .
+
+<code/dbsnp_val_status/bySubmitter> a skos:Concept, code:Dbsnp_val_status;
+  skos:topConceptOf code:dbsnp_val_status ;
+  skos:prefLabel "bySubmitter" ;
+  skos:inScheme code:dbsnp_val_status .
+
+<code/dbsnp_val_status/alternate_allele> a skos:Concept, code:Dbsnp_val_status;
+  skos:topConceptOf code:dbsnp_val_status ;
+  skos:prefLabel "alternate_allele" ;
+  skos:inScheme code:dbsnp_val_status .
+
+<code/verification_status/Verified,> a skos:Concept, code:Verification_status;
+  skos:topConceptOf code:verification_status ;
+  skos:prefLabel "Verified," ;
+  skos:inScheme code:verification_status .
+
+<code/verification_status/Unknown> a skos:Concept, code:Verification_status;
+  skos:topConceptOf code:verification_status ;
+  skos:prefLabel "Unknown" ;
+  skos:inScheme code:verification_status .
+
+<code/validation_status/Untested> a skos:Concept, code:Validation_status;
+  skos:topConceptOf code:validation_status ;
+  skos:prefLabel "Untested" ;
+  skos:inScheme code:validation_status .
+
+<code/validation_status/Inconclusive> a skos:Concept, code:Validation_status;
+  skos:topConceptOf code:validation_status ;
+  skos:prefLabel "Inconclusive" ;
+  skos:inScheme code:validation_status .
+
+<code/validation_status/Valid> a skos:Concept, code:Validation_status;
+  skos:topConceptOf code:validation_status ;
+  skos:prefLabel "Valid" ;
+  skos:inScheme code:validation_status .
+
+<code/validation_status/Invalid> a skos:Concept, code:Validation_status;
+  skos:topConceptOf code:validation_status ;
+  skos:prefLabel "Invalid" ;
+  skos:inScheme code:validation_status .
+
+<code/mutation_status/None> a skos:Concept, code:Mutation_status;
+  skos:topConceptOf code:mutation_status ;
+  skos:prefLabel "None" ;
+  skos:inScheme code:mutation_status .
+
+<code/mutation_status/Germline> a skos:Concept, code:Mutation_status;
+  skos:topConceptOf code:mutation_status ;
+  skos:prefLabel "Germline" ;
+  skos:inScheme code:mutation_status .
+
+<code/mutation_status/Somatic> a skos:Concept, code:Mutation_status;
+  skos:topConceptOf code:mutation_status ;
+  skos:prefLabel "Somatic" ;
+  skos:inScheme code:mutation_status .
+
+<code/mutation_status/LOH> a skos:Concept, code:Mutation_status;
+  skos:topConceptOf code:mutation_status ;
+  skos:prefLabel "LOH" ;
+  skos:inScheme code:mutation_status .
+
+<code/mutation_status/Post-transcriptional> a skos:Concept, code:Mutation_status;
+  skos:topConceptOf code:mutation_status ;
+  skos:prefLabel "Post-transcriptional" ;
+  skos:inScheme code:mutation_status .
+
+<code/mutation_status/modification> a skos:Concept, code:Mutation_status;
+  skos:topConceptOf code:mutation_status ;
+  skos:prefLabel "modification" ;
+  skos:inScheme code:mutation_status .
+
+<code/mutation_status/Unknown> a skos:Concept, code:Mutation_status;
+  skos:topConceptOf code:mutation_status ;
+  skos:prefLabel "Unknown" ;
+  skos:inScheme code:mutation_status .
+
+<code/sequence_source/WGS> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "WGS" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/WGA> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "WGA" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/WXS> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "WXS" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/RNA-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "RNA-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/miRNA-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "miRNA-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/Bisulfite-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "Bisulfite-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/VALIDATION> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "VALIDATION" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/Other> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "Other" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/ncRNA-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "ncRNA-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/WCS> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "WCS" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/CLONE> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "CLONE" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/POOLCLONE> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "POOLCLONE" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/AMPLICON> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "AMPLICON" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/CLONEEND> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "CLONEEND" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/FINISHING> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "FINISHING" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/ChIP-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "ChIP-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/MNase-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "MNase-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/DNase-Hypersensitivity> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "DNase-Hypersensitivity" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/EST> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "EST" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/FL-cDNA> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "FL-cDNA" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/CTS> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "CTS" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/MRE-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "MRE-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/MeDIP-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "MeDIP-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/MBD-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "MBD-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/Tn-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "Tn-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/FAIRE-seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "FAIRE-seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/SELEX> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "SELEX" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/RIP-Seq> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "RIP-Seq" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequence_source/ChIA-PET> a skos:Concept, code:Sequence_source;
+  skos:topConceptOf code:sequence_source ;
+  skos:prefLabel "ChIA-PET" ;
+  skos:inScheme code:sequence_source .
+
+<code/sequencer/Illumina_GAIIx> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "Illumina_GAIIx" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/Illumina_HiSeq> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "Illumina_HiSeq" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/SOLID> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "SOLID" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/454> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "454" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/ABI_3730xl> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "ABI_3730xl" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/Ion_Torrent_PGM> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "Ion_Torrent_PGM" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/Ion_Torrent_Proton> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "Ion_Torrent_Proton" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/PacBio_RS> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "PacBio_RS" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/Illumina_MiSeq> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "Illumina_MiSeq" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/Illumina_HiSeq_2500> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "Illumina_HiSeq_2500" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/454_GS_FLX_Titanium> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "454_GS_FLX_Titanium" ;
+  skos:inScheme code:sequencer .
+
+<code/sequencer/AB_SOLiD_4_System> a skos:Concept, code:Sequencer;
+  skos:topConceptOf code:sequencer ;
+  skos:prefLabel "AB_SOLiD_4_System" ;
+  skos:inScheme code:sequencer .
+
+ns:obs2 a qb:Observation ;
+  qb:dataSet ns:dataset-maf_example ;
+  prop:Variant_Classification <code/variant_classification/Missense_Mutation> ;
+  prop:Variant_Type <code/variant_type/SNP> ;
+  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
+  prop:Verification_Status <code/verification_status/Unknown> ;
+  prop:Validation_Status <code/validation_status/Untested> ;
+  prop:Mutation_Status <code/mutation_status/Somatic> ;
+  prop:Sequence_Source <code/sequence_source/WXS> ;
+  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
+  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A1BG> ;
+  prop:Center "genome.wustl.edu" ;
+  prop:NCBI_Build 37 ;
+  prop:Chromosome 19 ;
+  prop:Start_Position 58862784 ;
+  prop:End_Position 58862784 ;
+  prop:Strand "+" ;
+  prop:Reference_Allele "C" ;
+  prop:Tumor_Seq_Allele1 "C" ;
+  prop:Tumor_Seq_Allele2 "T" ;
+  prop:dbSNP_RS "novel" ;
+  prop:Tumor_Sample_Barcode "TCGA-E9-A22B-01A-11D-A159-09" ;
+  prop:Matched_Norm_Sample_Barcode "TCGA-E9-A22B-10A-01D-A159-09" ;
+  prop:Match_Norm_Seq_Allele1 "C" ;
+  prop:Match_Norm_Seq_Allele2 "C" ;
+  prop:Sequencing_Phase "Phase_IV" ;
+  prop:Validation_Method "none" ;
+  prop:Score 1 ;
+  prop:BAM_File "dbGAP" ;
+  prop:Tumor_Sample_UUID "e46a5d19-2dd7-4c34-8fff-6276278c58b3" ;
+  prop:Matched_Norm_Sample_UUID "f948182a-f814-4e3c-83ee-82b78aa423c1" ;
+  prop:patient_id "E9-A22B" ;
+  prop:sample_id "01A-11D-A159-09" ;
+  .
+
+ns:obs3 a qb:Observation ;
+  qb:dataSet ns:dataset-maf_example ;
+  prop:Variant_Classification <code/variant_classification/Missense_Mutation> ;
+  prop:Variant_Type <code/variant_type/SNP> ;
+  prop:dbSNP_Val_Status <code/dbsnp_val_status/byFrequency> ;
+  prop:Verification_Status <code/verification_status/Unknown> ;
+  prop:Validation_Status <code/validation_status/Untested> ;
+  prop:Mutation_Status <code/mutation_status/Somatic> ;
+  prop:Sequence_Source <code/sequence_source/WXS> ;
+  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
+  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A1BG> ;
+  prop:Center "genome.wustl.edu" ;
+  prop:NCBI_Build 37 ;
+  prop:Chromosome 19 ;
+  prop:Start_Position 58864366 ;
+  prop:End_Position 58864366 ;
+  prop:Strand "+" ;
+  prop:Reference_Allele "G" ;
+  prop:Tumor_Seq_Allele1 "G" ;
+  prop:Tumor_Seq_Allele2 "A" ;
+  prop:dbSNP_RS <http://identifiers.org/dbsnp/151098196> ;
+  prop:Tumor_Sample_Barcode "TCGA-E9-A1NH-01A-11D-A14G-09" ;
+  prop:Matched_Norm_Sample_Barcode "TCGA-E9-A1NH-11A-33D-A14G-09" ;
+  prop:Match_Norm_Seq_Allele1 "G" ;
+  prop:Match_Norm_Seq_Allele2 "G" ;
+  prop:Sequencing_Phase "Phase_IV" ;
+  prop:Validation_Method "none" ;
+  prop:Score 1 ;
+  prop:BAM_File "dbGAP" ;
+  prop:Tumor_Sample_UUID "13c312ec-0add-4758-ab8d-c193e2e08c6d" ;
+  prop:Matched_Norm_Sample_UUID "0ee95056-a7cc-415c-a487-3ad08604dfc0" ;
+  prop:patient_id "E9-A1NH" ;
+  prop:sample_id "01A-11D-A14G-09" ;
+  .
+
+ns:obs4 a qb:Observation ;
+  qb:dataSet ns:dataset-maf_example ;
+  prop:Variant_Classification <code/variant_classification/Missense_Mutation> ;
+  prop:Variant_Type <code/variant_type/SNP> ;
+  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
+  prop:Verification_Status <code/verification_status/Unknown> ;
+  prop:Validation_Status <code/validation_status/Untested> ;
+  prop:Mutation_Status <code/mutation_status/Somatic> ;
+  prop:Sequence_Source <code/sequence_source/WXS> ;
+  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
+  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A1CF> ;
+  prop:Entrez_Gene_Id <http://identifiers.org/ncbigene/29974> ;
+  prop:Center "genome.wustl.edu" ;
+  prop:NCBI_Build 37 ;
+  prop:Chromosome 10 ;
+  prop:Start_Position 52595854 ;
+  prop:End_Position 52595854 ;
+  prop:Strand "+" ;
+  prop:Reference_Allele "G" ;
+  prop:Tumor_Seq_Allele1 "G" ;
+  prop:Tumor_Seq_Allele2 "A" ;
+  prop:dbSNP_RS "novel" ;
+  prop:Tumor_Sample_Barcode "TCGA-BH-A0HP-01A-12D-A099-09" ;
+  prop:Matched_Norm_Sample_Barcode "TCGA-BH-A0HP-10A-01D-A099-09" ;
+  prop:Match_Norm_Seq_Allele1 "G" ;
+  prop:Match_Norm_Seq_Allele2 "G" ;
+  prop:Sequencing_Phase "Phase_IV" ;
+  prop:Validation_Method "none" ;
+  prop:Score 1 ;
+  prop:BAM_File "dbGAP" ;
+  prop:Tumor_Sample_UUID "ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2" ;
+  prop:Matched_Norm_Sample_UUID "8c059d33-23de-439a-914a-290527c5efbe" ;
+  prop:patient_id "BH-A0HP" ;
+  prop:sample_id "01A-12D-A099-09" ;
+  .
+
+ns:obs5 a qb:Observation ;
+  qb:dataSet ns:dataset-maf_example ;
+  prop:Variant_Classification <code/variant_classification/Silent> ;
+  prop:Variant_Type <code/variant_type/SNP> ;
+  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
+  prop:Verification_Status <code/verification_status/Unknown> ;
+  prop:Validation_Status <code/validation_status/Untested> ;
+  prop:Mutation_Status <code/mutation_status/Somatic> ;
+  prop:Sequence_Source <code/sequence_source/WXS> ;
+  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
+  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A1CF> ;
+  prop:Entrez_Gene_Id <http://identifiers.org/ncbigene/29974> ;
+  prop:Center "genome.wustl.edu" ;
+  prop:NCBI_Build 37 ;
+  prop:Chromosome 10 ;
+  prop:Start_Position 52595937 ;
+  prop:End_Position 52595937 ;
+  prop:Strand "+" ;
+  prop:Reference_Allele "G" ;
+  prop:Tumor_Seq_Allele1 "G" ;
+  prop:Tumor_Seq_Allele2 "A" ;
+  prop:dbSNP_RS "novel" ;
+  prop:Tumor_Sample_Barcode "TCGA-BH-A18P-01A-11D-A12B-09" ;
+  prop:Matched_Norm_Sample_Barcode "TCGA-BH-A18P-11A-43D-A12B-09" ;
+  prop:Match_Norm_Seq_Allele1 "G" ;
+  prop:Match_Norm_Seq_Allele2 "G" ;
+  prop:Sequencing_Phase "Phase_IV" ;
+  prop:Validation_Method "none" ;
+  prop:Score 1 ;
+  prop:BAM_File "dbGAP" ;
+  prop:Tumor_Sample_UUID "add624a3-57e9-46be-9bcc-3e53d7c2dfb7" ;
+  prop:Matched_Norm_Sample_UUID "5cae8dca-b28a-4483-9c03-6f0645161c04" ;
+  prop:patient_id "BH-A18P" ;
+  prop:sample_id "01A-11D-A12B-09" ;
+  .
+
+ns:obs6 a qb:Observation ;
+  qb:dataSet ns:dataset-maf_example ;
+  prop:Variant_Classification <code/variant_classification/Silent> ;
+  prop:Variant_Type <code/variant_type/SNP> ;
+  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
+  prop:Verification_Status <code/verification_status/Unknown> ;
+  prop:Validation_Status <code/validation_status/Untested> ;
+  prop:Mutation_Status <code/mutation_status/Somatic> ;
+  prop:Sequence_Source <code/sequence_source/WXS> ;
+  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
+  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A2BP1> ;
+  prop:Center "genome.wustl.edu" ;
+  prop:NCBI_Build 37 ;
+  prop:Chromosome 16 ;
+  prop:Start_Position 7568361 ;
+  prop:End_Position 7568361 ;
+  prop:Strand "+" ;
+  prop:Reference_Allele "G" ;
+  prop:Tumor_Seq_Allele1 "G" ;
+  prop:Tumor_Seq_Allele2 "C" ;
+  prop:dbSNP_RS "novel" ;
+  prop:Tumor_Sample_Barcode "TCGA-D8-A1JN-01A-11D-A13L-09" ;
+  prop:Matched_Norm_Sample_Barcode "TCGA-D8-A1JN-10A-01D-A13O-09" ;
+  prop:Match_Norm_Seq_Allele1 "G" ;
+  prop:Match_Norm_Seq_Allele2 "G" ;
+  prop:Sequencing_Phase "Phase_IV" ;
+  prop:Validation_Method "none" ;
+  prop:Score 1 ;
+  prop:BAM_File "dbGAP" ;
+  prop:Tumor_Sample_UUID "c83c7d48-8671-4f27-b3dd-05411fa2f784" ;
+  prop:Matched_Norm_Sample_UUID "c14cac2a-e308-44fa-b1af-ee51511ee0ee" ;
+  prop:patient_id "D8-A1JN" ;
+  prop:sample_id "01A-11D-A13L-09" ;
+  .
+
+ns:obs7 a qb:Observation ;
+  qb:dataSet ns:dataset-maf_example ;
+  prop:Variant_Classification <code/variant_classification/Missense_Mutation> ;
+  prop:Variant_Type <code/variant_type/SNP> ;
+  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
+  prop:Verification_Status <code/verification_status/Unknown> ;
+  prop:Validation_Status <code/validation_status/Valid> ;
+  prop:Mutation_Status <code/mutation_status/Somatic> ;
+  prop:Sequence_Source <code/sequence_source/WXS> ;
+  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
+  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A2BP1> ;
+  prop:Entrez_Gene_Id <http://identifiers.org/ncbigene/54715> ;
+  prop:Center "genome.wustl.edu" ;
+  prop:NCBI_Build 37 ;
+  prop:Chromosome 16 ;
+  prop:Start_Position 7102099 ;
+  prop:End_Position 7102099 ;
+  prop:Strand "+" ;
+  prop:Reference_Allele "G" ;
+  prop:Tumor_Seq_Allele1 "G" ;
+  prop:Tumor_Seq_Allele2 "T" ;
+  prop:dbSNP_RS "novel" ;
+  prop:Tumor_Sample_Barcode "TCGA-E2-A1BC-01A-11D-A14G-09" ;
+  prop:Matched_Norm_Sample_Barcode "TCGA-E2-A1BC-10A-01D-A12Q-09" ;
+  prop:Match_Norm_Seq_Allele1 "G" ;
+  prop:Match_Norm_Seq_Allele2 "G" ;
+  prop:Tumor_Validation_Allele1 "G" ;
+  prop:Tumor_Validation_Allele2 "T" ;
+  prop:Match_Norm_Validation_Allele1 "G" ;
+  prop:Match_Norm_Validation_Allele2 "G" ;
+  prop:Sequencing_Phase "Phase_IV" ;
+  prop:Validation_Method "Illumina_WXS_gDNA" ;
+  prop:Score 1 ;
+  prop:BAM_File "dbGAP" ;
+  prop:Tumor_Sample_UUID "5947a9db-7d13-44ff-86ad-eb5e6c8dcec5" ;
+  prop:Matched_Norm_Sample_UUID "6a4cd52f-2247-4caf-9b37-e90b02fd4d8b" ;
+  prop:patient_id "E2-A1BC" ;
+  prop:sample_id "01A-11D-A14G-09" ;
+  .
+