publisci 0.1.2 → 0.1.3

data/lib/{bio-publisci → publisci}/dsl/metadata_dsl.rb

@@ -32,6 +32,10 @@ module PubliSci
         add_or_get('topic',sub)
       end
 
+      def date(d=nil)
+        add_or_get('date',d)
+      end
+
       def publishers(pub=nil,&block)
         if block_given?
           p = Publisher.new

data/lib/{bio-publisci → publisci}/query/query_helper.rb

@@ -48,8 +48,8 @@ module PubliSci
     end
 
     def execute_from_file(file,store,type=:fourstore,substitutions={})
-      if Gem::Dependency.new('bio-publisci').matching_specs.size > 0
-        queries_dir = Gem::Specification.find_by_name("bio-publisci").gem_dir + "/resources/queries/"
+      if Gem::Dependency.new('publisci').matching_specs.size > 0
+        queries_dir = Gem::Specification.find_by_name("publisci").gem_dir + "/resources/queries/"
       else
         queries_dir = File.dirname(__FILE__) + '/../../../resources/queries/'
       end

data/lib/template_bak.rb

@@ -8,5 +8,5 @@
 #
 # In this file only require other files. Avoid other source code.
 
-require 'bio-publisci/publisci.rb'
+require 'publisci/publisci.rb'
 

data/scripts/get_gene_lengths.rb

@@ -1,5 +1,5 @@
-# require_relative '../lib/bio-publisci.rb'
-require 'bio-publisci'
+# require_relative '../lib/publisci.rb'
+require 'publisci'
 def gene_lengths(repo)
 
   gene_query = <<-EOF

data/scripts/islet_mlratio.rb

@@ -1,4 +1,4 @@
-load File.dirname(__FILE__) + '/../lib/bio-publisci.rb'
+load File.dirname(__FILE__) + '/../lib/publisci.rb'
 
 gen = PubliSci::Readers::RMatrix.new
 con = Rserve::Connection.new

data/scripts/scan_islet.rb

@@ -1,4 +1,4 @@
-load File.dirname(__FILE__) + '/../lib/bio-publisci.rb'
+load File.dirname(__FILE__) + '/../lib/publisci.rb'
 
 gen = PubliSci::Readers::RMatrix.new
 con = Rserve::Connection.new

data/scripts/update_reference.rb

@@ -2,7 +2,7 @@ puts "Really rewrite reference files? This could mess up the tests... [y/N]"
 exit unless gets.chomp == 'y'
 
 puts "overwriting #{File.absolute_path(File.dirname(__FILE__) + '/../spec/turtle/bacon')}"
-load File.dirname(__FILE__) + '/../lib/bio-publisci.rb'
+load File.dirname(__FILE__) + '/../lib/publisci.rb'
 
 gen = PubliSci::Readers::CSV.new
 turtle_string = gen.generate_n3(File.dirname(__FILE__) + '/../spec/csv/bacon.csv','bacon',{dimensions:["producer","pricerange"], label_column:0})

data/spec/ORM/data_cube_orm_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 
 describe PubliSci::ORM do
 

data/spec/ORM/prov_model_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 include PubliSci::Prov::DSL
 # include PubliSci::Prov
 

data/spec/analyzer_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../lib/bio-publisci.rb'
+require_relative '../lib/publisci.rb'
 
 describe PubliSci::Analyzer do
 	class Ana

data/spec/bnode_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../lib/bio-publisci.rb'
+require_relative '../lib/publisci.rb'
 
 
 describe "DataCube Node Generation" do

data/spec/data_cube_spec.rb

@@ -4,7 +4,7 @@
 # require_relative '../lib/r2rdf/r_builder.rb'
 # require_relative '../lib/r2rdf/generators/csv.rb'
 
-require_relative '../lib/bio-publisci.rb'
+require_relative '../lib/publisci.rb'
 
 
 describe PubliSci::Dataset::DataCube do

data/spec/dataset_for_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../lib/bio-publisci.rb'
+require_relative '../lib/publisci.rb'
 
 describe PubliSci::Dataset do
   it "should use sio:has_value for unknown string types" do
@@ -46,7 +46,7 @@ describe PubliSci::Dataset do
     end
 
     it "will download remote files" do
-      turtle_string = PubliSci::Dataset.for('https://raw.github.com/wstrinz/bioruby-publisci/master/spec/csv/bacon.csv',false)
+      turtle_string = PubliSci::Dataset.for('https://raw.github.com/wstrinz/publisci/master/spec/csv/bacon.csv',false)
       (turtle_string =~ /prop:pricerange/).should_not be nil
       (turtle_string =~ /prop:producer/).should_not be nil
     end
@@ -67,7 +67,7 @@ describe PubliSci::Dataset do
     end
 
     it "will attempt to load remote file if given URI" do
-      loc = 'https://raw.github.com/wstrinz/bioruby-publisci/master/spec/csv/bacon.csv'
+      loc = 'https://raw.github.com/wstrinz/publisci/master/spec/csv/bacon.csv'
       turtle_string = PubliSci::Dataset.for(loc,false)
       (turtle_string =~ /prop:pricerange/).should_not be nil
       (turtle_string =~ /prop:producer/).should_not be nil

data/spec/dsl_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../lib/bio-publisci.rb'
+require_relative '../lib/publisci.rb'
 
 describe PubliSci::DSL do
   include PubliSci::DSL
@@ -71,7 +71,7 @@ describe PubliSci::DSL do
     ev = PubliSci::DSL::Instance.new
     dat = ev.instance_eval <<-EOF
     data do
-      object 'https://raw.github.com/wstrinz/bioruby-publisci/master/spec/csv/bacon.csv'
+      object 'https://raw.github.com/wstrinz/publisci/master/spec/csv/bacon.csv'
     end
     EOF
     dat.should_not be nil
@@ -100,6 +100,16 @@ describe PubliSci::DSL do
     repo.size.should > 0
   end
 
+  it "can specify dimesions and measures" do
+    dat = data do
+      object 'spec/csv/bacon.csv'
+      dimension 'producer','pricerange','chunkiness','deliciousness'
+    end
+    
+    n3 = generate_n3
+    n3["qb:measure"].should be nil
+  end
+
   it "can output to 4store repository", no_travis: true do
     configure do |cfg|
       cfg.repository = :fourstore

data/spec/generators/csv_spec.rb

@@ -1,6 +1,6 @@
 # require_relative '../../lib/r2rdf/data_cube.rb'
 # require_relative '../../lib/r2rdf/generators/csv.rb'
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 
 # require 'rdf/turtle'
 require 'tempfile'

data/spec/generators/dataframe_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 
 describe PubliSci::Readers::Dataframe do
 

data/spec/generators/maf_spec.rb

@@ -1,6 +1,6 @@
 # require_relative '../../lib/r2rdf/data_cube.rb'
 # require_relative '../../lib/r2rdf/generators/csv.rb'
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 
 # require 'rdf/turtle'
 require 'tempfile'

data/spec/generators/r_cross_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 
 require 'tempfile'
 

data/spec/generators/r_matrix_spec.rb

@@ -2,7 +2,7 @@
 # require_relative '../../lib/r2rdf/generators/r_matrix.rb'
 # require 'rdf/turtle'
 # require 'rserve'
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 
 require 'tempfile'
 

data/spec/maf_query_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../lib/bio-publisci.rb'
+require_relative '../lib/publisci.rb'
 
 #sparql = SPARQL::Client.new("#{repo.uri}/sparql/").query(qry)
 

data/spec/metadata/metadata_dsl_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 
 describe PubliSci::Metadata::DSL do
   include PubliSci::Metadata::DSL

data/spec/prov/activity_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 include PubliSci::Prov::DSL
 # include PubliSci
 

data/spec/prov/agent_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 include PubliSci::Prov::DSL
 
 describe PubliSci::Prov::Agent do

data/spec/prov/association_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 include PubliSci::Prov::DSL
 
 describe PubliSci::Prov::Association do

data/spec/prov/config_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 include PubliSci::Prov::DSL
 include PubliSci
 

data/spec/prov/derivation_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 include PubliSci::Prov::DSL
 
 describe PubliSci::Prov::Derivation do

data/spec/prov/entity_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 include PubliSci::Prov::DSL
 
 describe PubliSci::Prov::Entity do

data/spec/prov/role_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 include PubliSci::Prov::DSL
 
 describe PubliSci::Prov::Role do

data/spec/prov/usage_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../../lib/bio-publisci.rb'
+require_relative '../../lib/publisci.rb'
 include PubliSci::Prov::DSL
 
 describe PubliSci::Prov::Usage do

data/spec/r_builder_spec.rb

@@ -4,7 +4,7 @@
 # require_relative '../lib/r2rdf/r_builder.rb'
 # require_relative '../lib/r2rdf/query_helper.rb'
 # require_relative '../lib/r2rdf/generators/csv.rb'
-require_relative '../lib/bio-publisci.rb'
+require_relative '../lib/publisci.rb'
 
 
 describe PubliSci::Writers::Dataframe do

data/spec/writer_spec.rb

@@ -1,4 +1,4 @@
-require_relative '../lib/bio-publisci.rb'
+require_relative '../lib/publisci.rb'
 
 describe PubliSci::Writers do
   before(:each) do
@@ -38,17 +38,19 @@ describe PubliSci::Writers do
   end
 
   it "can output JSON from turtle string" do
-    writer = PubliSci::Writers::JSON.new
-    out = writer.from_turtle('spec/turtle/weather')
-    JSON.parse(out).size.should > 0
+    pending("re-implement using json-ld gem")
+    # writer = PubliSci::Writers::JSON.new
+    # out = writer.from_turtle('spec/turtle/weather')
+    # JSON.parse(out).size.should > 0
   end
 
   it "can output JSON from a store" do
-    writer = PubliSci::Writers::JSON.new
-    repo = RDF::Repository.load('spec/turtle/weather')
-    out = writer.from_store(repo)
-    # minor hack since metadata isn't the same
-    JSON.parse(out).size.should > 0
+    pending("re-implement using json-ld gem")
+    # writer = PubliSci::Writers::JSON.new
+    # repo = RDF::Repository.load('spec/turtle/weather')
+    # out = writer.from_store(repo)
+    # # minor hack since metadata isn't the same
+    # JSON.parse(out).size.should > 0
   end
 
   context "can restrict to a particular dataset" do

metadata

@@ -1,87 +1,17 @@
 --- !ruby/object:Gem::Specification
 name: publisci
 version: !ruby/object:Gem::Version
-  version: 0.1.2
+  version: 0.1.3
 platform: ruby
 authors:
 - Will Strinz
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-09-26 00:00:00.000000000 Z
+date: 2013-10-10 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
-  name: rdf
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: rdf-4store
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: rdf-turtle
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: rdf-rdfxml
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: json-ld
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: rserve-client
+  name: rest-client
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '>='
@@ -95,7 +25,7 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
-  name: sparql
+  name: rdf
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '>='
@@ -109,7 +39,7 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
-  name: slop
+  name: rdf-4store
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '>='
@@ -123,7 +53,7 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
-  name: sinatra
+  name: rdf-turtle
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '>='
@@ -137,7 +67,7 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
-  name: sinatra-contrib
+  name: rdf-rdfxml
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '>='
@@ -151,7 +81,7 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
-  name: sinatra-linkeddata
+  name: json-ld
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '>='
@@ -165,7 +95,7 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
-  name: sinatra-cross_origin
+  name: rserve-client
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '>='
@@ -179,7 +109,7 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
-  name: rack-flash3
+  name: sparql
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '>='
@@ -193,7 +123,7 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
-  name: rest-client
+  name: spira
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '>='
@@ -318,26 +248,11 @@ dependencies:
     - - '>='
       - !ruby/object:Gem::Version
         version: '0'
-- !ruby/object:Gem::Dependency
-  name: spira
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - '>='
-      - !ruby/object:Gem::Version
-        version: '0'
 description: 'A toolkit for publishing scientific results and datasets using RDF,
   OWL, and related technologies '
 email: wstrinz@gmail.com
 executables:
-- bio-publisci
-- bio-publisci-server
+- publisci
 extensions: []
 extra_rdoc_files:
 - LICENSE.txt
@@ -352,8 +267,7 @@ files:
 - README.md
 - README.rdoc
 - Rakefile
-- bin/bio-publisci
-- bin/bio-publisci-server
+- bin/publisci
 - examples/bio-band_integration.rb
 - examples/no_magic.prov
 - examples/no_magic.rb
@@ -382,59 +296,57 @@ files:
 - features/support/env.rb
 - features/writer.feature
 - features/writer_steps.rb
-- lib/bio-publisci.rb
-- lib/bio-publisci/analyzer.rb
-- lib/bio-publisci/datacube_model.rb
-- lib/bio-publisci/dataset/ORM/data_cube_orm.rb
-- lib/bio-publisci/dataset/ORM/observation.rb
-- lib/bio-publisci/dataset/configuration.rb
-- lib/bio-publisci/dataset/data_cube.rb
-- lib/bio-publisci/dataset/dataset.rb
-- lib/bio-publisci/dataset/dataset_for.rb
-- lib/bio-publisci/dataset/interactive.rb
-- lib/bio-publisci/dsl/config.rb
-- lib/bio-publisci/dsl/dataset_dsl.rb
-- lib/bio-publisci/dsl/dsl.rb
-- lib/bio-publisci/dsl/metadata_dsl.rb
-- lib/bio-publisci/dsl/prov_dsl.rb
-- lib/bio-publisci/metadata/generator.rb
-- lib/bio-publisci/metadata/metadata.rb
-- lib/bio-publisci/metadata/metadata_model.rb
-- lib/bio-publisci/metadata/prov/activity.rb
-- lib/bio-publisci/metadata/prov/agent.rb
-- lib/bio-publisci/metadata/prov/association.rb
-- lib/bio-publisci/metadata/prov/config.rb
-- lib/bio-publisci/metadata/prov/derivation.rb
-- lib/bio-publisci/metadata/prov/element.rb
-- lib/bio-publisci/metadata/prov/entity.rb
-- lib/bio-publisci/metadata/prov/model/prov_models.rb
-- lib/bio-publisci/metadata/prov/plan.rb
-- lib/bio-publisci/metadata/prov/prov.rb
-- lib/bio-publisci/metadata/prov/role.rb
-- lib/bio-publisci/metadata/prov/usage.rb
-- lib/bio-publisci/metadata/publisher.rb
-- lib/bio-publisci/mixins/custom_predicate.rb
-- lib/bio-publisci/mixins/dereferencable.rb
-- lib/bio-publisci/mixins/registry.rb
-- lib/bio-publisci/mixins/vocabulary.rb
-- lib/bio-publisci/output.rb
-- lib/bio-publisci/parser.rb
-- lib/bio-publisci/post_processor.rb
-- lib/bio-publisci/query/query_helper.rb
-- lib/bio-publisci/r_client.rb
-- lib/bio-publisci/readers/arff.rb
-- lib/bio-publisci/readers/base.rb
-- lib/bio-publisci/readers/csv.rb
-- lib/bio-publisci/readers/dataframe.rb
-- lib/bio-publisci/readers/maf.rb
-- lib/bio-publisci/readers/r_cross.rb
-- lib/bio-publisci/readers/r_matrix.rb
-- lib/bio-publisci/store.rb
-- lib/bio-publisci/writers/arff.rb
-- lib/bio-publisci/writers/base.rb
-- lib/bio-publisci/writers/csv.rb
-- lib/bio-publisci/writers/dataframe.rb
-- lib/bio-publisci/writers/json.rb
+- lib/publisci.rb
+- lib/publisci/analyzer.rb
+- lib/publisci/datacube_model.rb
+- lib/publisci/dataset/ORM/data_cube_orm.rb
+- lib/publisci/dataset/ORM/observation.rb
+- lib/publisci/dataset/configuration.rb
+- lib/publisci/dataset/data_cube.rb
+- lib/publisci/dataset/dataset.rb
+- lib/publisci/dataset/dataset_for.rb
+- lib/publisci/dataset/interactive.rb
+- lib/publisci/dsl/config.rb
+- lib/publisci/dsl/dataset_dsl.rb
+- lib/publisci/dsl/dsl.rb
+- lib/publisci/dsl/metadata_dsl.rb
+- lib/publisci/dsl/prov_dsl.rb
+- lib/publisci/metadata/generator.rb
+- lib/publisci/metadata/metadata.rb
+- lib/publisci/metadata/metadata_model.rb
+- lib/publisci/metadata/prov/activity.rb
+- lib/publisci/metadata/prov/agent.rb
+- lib/publisci/metadata/prov/association.rb
+- lib/publisci/metadata/prov/config.rb
+- lib/publisci/metadata/prov/derivation.rb
+- lib/publisci/metadata/prov/element.rb
+- lib/publisci/metadata/prov/entity.rb
+- lib/publisci/metadata/prov/model/prov_models.rb
+- lib/publisci/metadata/prov/plan.rb
+- lib/publisci/metadata/prov/prov.rb
+- lib/publisci/metadata/prov/role.rb
+- lib/publisci/metadata/prov/usage.rb
+- lib/publisci/metadata/publisher.rb
+- lib/publisci/mixins/custom_predicate.rb
+- lib/publisci/mixins/dereferencable.rb
+- lib/publisci/mixins/registry.rb
+- lib/publisci/mixins/vocabulary.rb
+- lib/publisci/output.rb
+- lib/publisci/parser.rb
+- lib/publisci/post_processor.rb
+- lib/publisci/query/query_helper.rb
+- lib/publisci/readers/arff.rb
+- lib/publisci/readers/base.rb
+- lib/publisci/readers/csv.rb
+- lib/publisci/readers/dataframe.rb
+- lib/publisci/readers/maf.rb
+- lib/publisci/readers/r_cross.rb
+- lib/publisci/readers/r_matrix.rb
+- lib/publisci/store.rb
+- lib/publisci/writers/arff.rb
+- lib/publisci/writers/base.rb
+- lib/publisci/writers/csv.rb
+- lib/publisci/writers/dataframe.rb
 - lib/r2rdf.rb
 - lib/template_bak.rb
 - lib/template_bak/publisci.rb
@@ -481,44 +393,6 @@ files:
 - scripts/islet_mlratio.rb
 - scripts/scan_islet.rb
 - scripts/update_reference.rb
-- server/helpers.rb
-- server/public/src-min-noconflict/LICENSE
-- server/public/src-min-noconflict/ace.js
-- server/public/src-min-noconflict/ext-chromevox.js
-- server/public/src-min-noconflict/ext-elastic_tabstops_lite.js
-- server/public/src-min-noconflict/ext-emmet.js
-- server/public/src-min-noconflict/ext-keybinding_menu.js
-- server/public/src-min-noconflict/ext-language_tools.js
-- server/public/src-min-noconflict/ext-modelist.js
-- server/public/src-min-noconflict/ext-old_ie.js
-- server/public/src-min-noconflict/ext-searchbox.js
-- server/public/src-min-noconflict/ext-settings_menu.js
-- server/public/src-min-noconflict/ext-spellcheck.js
-- server/public/src-min-noconflict/ext-split.js
-- server/public/src-min-noconflict/ext-static_highlight.js
-- server/public/src-min-noconflict/ext-statusbar.js
-- server/public/src-min-noconflict/ext-textarea.js
-- server/public/src-min-noconflict/ext-themelist.js
-- server/public/src-min-noconflict/ext-whitespace.js
-- server/public/src-min-noconflict/keybinding-emacs.js
-- server/public/src-min-noconflict/keybinding-vim.js
-- server/public/src-min-noconflict/mode-ruby.js
-- server/public/src-min-noconflict/snippets/ruby.js
-- server/public/src-min-noconflict/theme-twilight.js
-- server/public/src-min-noconflict/worker-coffee.js
-- server/public/src-min-noconflict/worker-css.js
-- server/public/src-min-noconflict/worker-javascript.js
-- server/public/src-min-noconflict/worker-json.js
-- server/public/src-min-noconflict/worker-lua.js
-- server/public/src-min-noconflict/worker-php.js
-- server/public/src-min-noconflict/worker-xquery.js
-- server/routes.rb
-- server/views/dsl.haml
-- server/views/dump.haml
-- server/views/import.haml
-- server/views/new_repository.haml
-- server/views/query.haml
-- server/views/repository.haml
 - spec/ORM/data_cube_orm_spec.rb
 - spec/ORM/prov_model_spec.rb
 - spec/analyzer_spec.rb
@@ -562,7 +436,7 @@ files:
 - spec/turtle/reference
 - spec/turtle/weather
 - spec/writer_spec.rb
-homepage: http://github.com/wstrinz/bioruby-publisci
+homepage: http://github.com/wstrinz/publisci
 licenses:
 - MIT
 metadata: {}