pubannotation_evaluator 1.1.0 → 1.2.0
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- checksums.yaml +4 -4
- data/bin/pubannotation-eval +6 -1
- data/lib/pubannotation_evaluator/pubannotation_evaluator.rb +2 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 221340084b2e71edebc25671fe196d05f0e17ebeb3b2b9e8bca72c0fd6c42266
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4
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+
data.tar.gz: 2c88f506c78a19a43d72c5c009cc40d0c586146b9e13d02bb5075a9460162596
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 6ab795d95e7a6e44406932e132c65f0a5391f4a2623bba8d35126cdec68e7ae9c097d2dc2bb7da7e8f9db121d147a9dbf18a52e3b9f9f040bf272efbe468e1f1
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7
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+
data.tar.gz: 40efce24c19bfe9b2d4b62065a553a1b218a36703c6e1e2b074462788afabb68fbe3b4fce9ab666fc74e2fe0147bc7405206d02b784db5fcfe5fb6878c7961ac
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data/bin/pubannotation-eval
CHANGED
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@@ -84,6 +84,11 @@ if verbose
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84
84
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85
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false_negatives = comparison.select{|m| m[:study].nil? && m[:reference]}
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86
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evaluation[:false_negatives] = false_negatives unless false_negatives.empty?
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87
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+
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88
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true_positives = comparison.select{|m| m[:study] && m[:reference]}
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89
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evaluation[:true_positives] = true_positives unless true_positives.empty?
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87
90
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end
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91
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89
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-
puts JSON.generate(evaluation)
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92
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+
puts JSON.generate(evaluation)
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93
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+
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94
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# puts JSON.generate(comparison)
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@@ -70,8 +70,8 @@ class PubannotationEvaluator
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70
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matches = find_denotation_matches(mmatches)
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false_positives = study_denotations - matches.collect{|r| r[:study]}
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false_negatives = reference_denotations - matches.collect{|r| r[:reference]}
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73
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-
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74
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-
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73
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+
study_denotations.each{|r| r.merge!(text:text[r[:span][:begin]...r[:span][:end]])}
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74
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+
reference_denotations.each{|r| r.merge!(text:text[r[:span][:begin]...r[:span][:end]])}
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75
75
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comparison = matches + false_positives.collect{|s| {study:s}} + false_negatives.collect{|r| {reference:r}}
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76
76
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[comparison, mmatches]
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77
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
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name: pubannotation_evaluator
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3
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version: !ruby/object:Gem::Version
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4
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-
version: 1.
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4
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+
version: 1.2.0
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Jin-Dong Kim
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8
8
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autorequire:
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bindir: bin
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cert_chain: []
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11
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-
date: 2021-12-
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11
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+
date: 2021-12-22 00:00:00.000000000 Z
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dependencies: []
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description: A tool to evaluate the accuracy of a set of annotations.
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email: jdkim@dbcls.rois.ac.jp
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