pubannotation_evaluator 1.0.2 → 1.0.3
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checksums.yaml
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metadata.gz: 1ba6d5024226dba72a62356ced9473f6d9c3d0761bf2591240a9463d539b9d47
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data.tar.gz: 5fc854a7de2767f26b57d02e7bbf5b371613a08f49a10c3fed9aa2a9e055b2b7
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metadata.gz: 57c31f7d5c7d4a9400ceed1f582c92c093bf2ea5d47960d57a24b9c1d99cf6e5d9c94e6f138a298f6b0213b01d6bf562d44147ce964a94285aa8182a45ce74e5
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data.tar.gz: 9e6bb76a8db19410bd4a66c8442b0cc19a5b50397c63d134bf9128b13963071cd015604588a073ad2c1b3ee91bba76f10ffca2c75ff8a9f8774026b13e26fca2
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@@ -83,8 +83,11 @@ class PubannotationEvaluator
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mmatches = []
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study_denotations.each do |s|
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r_begin = reference_denotations.bsearch_index{|r| r[:span][:end] > s[:span][:begin]}
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break if r_begin.nil?
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r_end = reference_denotations.bsearch_index{|r| r[:span][:begin] > s[:span][:end]}
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r_end = r_end.nil? ? -1 : r_end - 1
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reference_denotations[r_begin .. r_end].each do |r|
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relatedness = get_relatedness_of_denotations(s, r, text)
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mmatches << {study:s, reference:r, weight:relatedness} if relatedness > 0
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