pho 0.4 → 0.4.1

data/doc/rdoc/classes/Pho/Namespaces.html

@@ -131,10 +131,15 @@
           <td>=</td>
           <td class="context-item-value">&quot;http://purl.org/dc/terms/&quot;</td>
         </tr>
+        <tr class="top-aligned-row context-row">
+          <td class="context-item-name">CHANGESET</td>
+          <td>=</td>
+          <td class="context-item-value">&quot;http://purl.org/vocab/changeset/schema#&quot;</td>
+        </tr>
         <tr class="top-aligned-row context-row">
           <td class="context-item-name">MAPPING</td>
           <td>=</td>
-          <td class="context-item-value">{       &quot;bf&quot; =&gt; CONFIG,       &quot;frm&quot; =&gt; FRAME,       &quot;rdf&quot; =&gt; RDF,       &quot;rdfs&quot; =&gt; RDFS,       &quot;dc&quot; =&gt; DC,       &quot;dcterms&quot; =&gt; DC_TERMS</td>
+          <td class="context-item-value">{       &quot;bf&quot; =&gt; CONFIG,       &quot;frm&quot; =&gt; FRAME,       &quot;rdf&quot; =&gt; RDF,       &quot;rdfs&quot; =&gt; RDFS,       &quot;dc&quot; =&gt; DC,       &quot;dcterms&quot; =&gt; DC_TERMS,       &quot;cs&quot; =&gt; CHANGESET</td>
         </tr>
         </table>
       </div>

data/doc/rdoc/classes/Pho/QueryProfile.html

@@ -98,16 +98,16 @@ href="Store.html">Store</a> methods.
       <h3 class="section-bar">Methods</h3>
 
       <div class="name-list">
-      <a href="#M000027">&lt;&lt;</a>&nbsp;&nbsp;
-      <a href="#M000025">create_weighting</a>&nbsp;&nbsp;
-      <a href="#M000028">get_by_name</a>&nbsp;&nbsp;
-      <a href="#M000031">mapped_name?</a>&nbsp;&nbsp;
-      <a href="#M000026">new</a>&nbsp;&nbsp;
-      <a href="#M000024">read_from_store</a>&nbsp;&nbsp;
-      <a href="#M000030">remove</a>&nbsp;&nbsp;
-      <a href="#M000029">remove_by_name</a>&nbsp;&nbsp;
-      <a href="#M000032">to_rdf</a>&nbsp;&nbsp;
-      <a href="#M000033">upload</a>&nbsp;&nbsp;
+      <a href="#M000056">&lt;&lt;</a>&nbsp;&nbsp;
+      <a href="#M000054">create_weighting</a>&nbsp;&nbsp;
+      <a href="#M000057">get_by_name</a>&nbsp;&nbsp;
+      <a href="#M000060">mapped_name?</a>&nbsp;&nbsp;
+      <a href="#M000055">new</a>&nbsp;&nbsp;
+      <a href="#M000053">read_from_store</a>&nbsp;&nbsp;
+      <a href="#M000059">remove</a>&nbsp;&nbsp;
+      <a href="#M000058">remove_by_name</a>&nbsp;&nbsp;
+      <a href="#M000061">to_rdf</a>&nbsp;&nbsp;
+      <a href="#M000062">upload</a>&nbsp;&nbsp;
       </div>
     </div>
 
@@ -161,11 +161,11 @@ URI for this resource
     <div id="methods">
       <h3 class="section-bar">Public Class methods</h3>
 
-      <div id="method-M000025" class="method-detail">
-        <a name="M000025"></a>
+      <div id="method-M000054" class="method-detail">
+        <a name="M000054"></a>
 
         <div class="method-heading">
-          <a href="#M000025" class="method-signature">
+          <a href="#M000054" class="method-signature">
           <span class="method-name">create_weighting</span><span class="method-args">(store, name, weight)</span>
           </a>
         </div>
@@ -188,8 +188,8 @@ according to the Platform naming rules
 </td></tr>
 </table>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000025-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000025-source">
+            onclick="toggleCode('M000054-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000054-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 84</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-constant">QueryProfile</span>.<span class="ruby-identifier">create_weighting</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">name</span>, <span class="ruby-identifier">weight</span>)
@@ -206,19 +206,19 @@ according to the Platform naming rules
         </div>
       </div>
 
-      <div id="method-M000026" class="method-detail">
-        <a name="M000026"></a>
+      <div id="method-M000055" class="method-detail">
+        <a name="M000055"></a>
 
         <div class="method-heading">
-          <a href="#M000026" class="method-signature">
+          <a href="#M000055" class="method-signature">
           <span class="method-name">new</span><span class="method-args">(uri, label, field_weights=Array.new)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000026-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000026-source">
+            onclick="toggleCode('M000055-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000055-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 94</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">uri</span>, <span class="ruby-identifier">label</span>, <span class="ruby-identifier">field_weights</span>=<span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>)
@@ -231,19 +231,19 @@ according to the Platform naming rules
         </div>
       </div>
 
-      <div id="method-M000024" class="method-detail">
-        <a name="M000024"></a>
+      <div id="method-M000053" class="method-detail">
+        <a name="M000053"></a>
 
         <div class="method-heading">
-          <a href="#M000024" class="method-signature">
+          <a href="#M000053" class="method-signature">
           <span class="method-name">read_from_store</span><span class="method-args">(store)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000024-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000024-source">
+            onclick="toggleCode('M000053-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000053-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 53</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-constant">QueryProfile</span>.<span class="ruby-identifier">read_from_store</span>(<span class="ruby-identifier">store</span>)
@@ -277,19 +277,19 @@ according to the Platform naming rules
 
       <h3 class="section-bar">Public Instance methods</h3>
 
-      <div id="method-M000027" class="method-detail">
-        <a name="M000027"></a>
+      <div id="method-M000056" class="method-detail">
+        <a name="M000056"></a>
 
         <div class="method-heading">
-          <a href="#M000027" class="method-signature">
+          <a href="#M000056" class="method-signature">
           <span class="method-name">&lt;&lt;</span><span class="method-args">(weight)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000027-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000027-source">
+            onclick="toggleCode('M000056-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000056-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 100</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-operator">&lt;&lt;</span>(<span class="ruby-identifier">weight</span>)
@@ -300,11 +300,11 @@ according to the Platform naming rules
         </div>
       </div>
 
-      <div id="method-M000028" class="method-detail">
-        <a name="M000028"></a>
+      <div id="method-M000057" class="method-detail">
+        <a name="M000057"></a>
 
         <div class="method-heading">
-          <a href="#M000028" class="method-signature">
+          <a href="#M000057" class="method-signature">
           <span class="method-name">get_by_name</span><span class="method-args">(name)</span>
           </a>
         </div>
@@ -314,8 +314,8 @@ according to the Platform naming rules
 Retrieve a FieldWeighing by name
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000028-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000028-source">
+            onclick="toggleCode('M000057-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000057-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 105</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_by_name</span>(<span class="ruby-identifier">name</span>)
@@ -326,11 +326,11 @@ Retrieve a FieldWeighing by name
         </div>
       </div>
 
-      <div id="method-M000031" class="method-detail">
-        <a name="M000031"></a>
+      <div id="method-M000060" class="method-detail">
+        <a name="M000060"></a>
 
         <div class="method-heading">
-          <a href="#M000031" class="method-signature">
+          <a href="#M000060" class="method-signature">
           <span class="method-name">mapped_name?</span><span class="method-args">(name)</span>
           </a>
         </div>
@@ -340,8 +340,8 @@ Retrieve a FieldWeighing by name
 Is there a field weighting for a property with this name?
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000031-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000031-source">
+            onclick="toggleCode('M000060-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000060-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 123</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">mapped_name?</span>(<span class="ruby-identifier">name</span>)
@@ -352,11 +352,11 @@ Is there a field weighting for a property with this name?
         </div>
       </div>
 
-      <div id="method-M000030" class="method-detail">
-        <a name="M000030"></a>
+      <div id="method-M000059" class="method-detail">
+        <a name="M000059"></a>
 
         <div class="method-heading">
-          <a href="#M000030" class="method-signature">
+          <a href="#M000059" class="method-signature">
           <span class="method-name">remove</span><span class="method-args">(fw)</span>
           </a>
         </div>
@@ -367,8 +367,8 @@ Remove a <a href="FieldWeighting.html">FieldWeighting</a> from the
 collection
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000030-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000030-source">
+            onclick="toggleCode('M000059-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000059-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 118</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">remove</span>(<span class="ruby-identifier">fw</span>)
@@ -379,11 +379,11 @@ collection
         </div>
       </div>
 
-      <div id="method-M000029" class="method-detail">
-        <a name="M000029"></a>
+      <div id="method-M000058" class="method-detail">
+        <a name="M000058"></a>
 
         <div class="method-heading">
-          <a href="#M000029" class="method-signature">
+          <a href="#M000058" class="method-signature">
           <span class="method-name">remove_by_name</span><span class="method-args">(name)</span>
           </a>
         </div>
@@ -393,8 +393,8 @@ collection
 Remove a <a href="FieldWeighting.html">FieldWeighting</a> by name
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000029-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000029-source">
+            onclick="toggleCode('M000058-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000058-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 110</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">remove_by_name</span>(<span class="ruby-identifier">name</span>)
@@ -408,11 +408,11 @@ Remove a <a href="FieldWeighting.html">FieldWeighting</a> by name
         </div>
       </div>
 
-      <div id="method-M000032" class="method-detail">
-        <a name="M000032"></a>
+      <div id="method-M000061" class="method-detail">
+        <a name="M000061"></a>
 
         <div class="method-heading">
-          <a href="#M000032" class="method-signature">
+          <a href="#M000061" class="method-signature">
           <span class="method-name">to_rdf</span><span class="method-args">()</span>
           </a>
         </div>
@@ -423,8 +423,8 @@ Dump this object to an RDF/XML representation suitable for submitting to
 the Platform
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000032-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000032-source">
+            onclick="toggleCode('M000061-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000061-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 128</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">to_rdf</span>
@@ -439,7 +439,7 @@ the Platform
       <span class="ruby-identifier">rdf</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-node">&quot; &lt;rdfs:label&gt;#{@label}&lt;/rdfs:label&gt; &quot;</span>
       
       <span class="ruby-ivar">@field_weights</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">property</span><span class="ruby-operator">|</span>
-        <span class="ruby-identifier">rdf</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-node">&quot; &lt;frm:fieldWeight rdf:resource=\&quot;#{property.uri}\&quot;/&gt; &quot;</span>
+        <span class="ruby-identifier">rdf</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-node">&quot; &lt;bf:fieldWeight rdf:resource=\&quot;#{property.uri}\&quot;/&gt; &quot;</span>
       <span class="ruby-keyword kw">end</span>
                   
       <span class="ruby-identifier">rdf</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-value str">&quot; &lt;/rdf:Description&gt;&quot;</span>
@@ -455,11 +455,11 @@ the Platform
         </div>
       </div>
 
-      <div id="method-M000033" class="method-detail">
-        <a name="M000033"></a>
+      <div id="method-M000062" class="method-detail">
+        <a name="M000062"></a>
 
         <div class="method-heading">
-          <a href="#M000033" class="method-signature">
+          <a href="#M000062" class="method-signature">
           <span class="method-name">upload</span><span class="method-args">(store)</span>
           </a>
         </div>
@@ -470,8 +470,8 @@ Upload an RDF/XML presentation of this object to the provided Platform <a
 href="Store.html">Store</a>
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000033-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000033-source">
+            onclick="toggleCode('M000062-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000062-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 153</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">upload</span>(<span class="ruby-identifier">store</span>)

data/doc/rdoc/classes/Pho/RDFCollection.html

@@ -82,7 +82,7 @@
       <p>
 Provides a simple mechanism for managing a directory of RDF/XML documents
 and uploading them to platform <a
-href="RDFCollection.html#M000095">store</a>.
+href="RDFCollection.html#M000125">store</a>.
 </p>
 <p>
 Allows a collection to be mirrored into the platform
@@ -97,17 +97,17 @@ Allows a collection to be mirrored into the platform
       <h3 class="section-bar">Methods</h3>
 
       <div class="name-list">
-      <a href="#M000099">failures</a>&nbsp;&nbsp;
-      <a href="#M000103">get_fail_file_for</a>&nbsp;&nbsp;
-      <a href="#M000104">get_ok_file_for</a>&nbsp;&nbsp;
-      <a href="#M000098">list</a>&nbsp;&nbsp;
-      <a href="#M000094">new</a>&nbsp;&nbsp;
-      <a href="#M000101">new_files</a>&nbsp;&nbsp;
-      <a href="#M000097">reset</a>&nbsp;&nbsp;
-      <a href="#M000096">retry_failures</a>&nbsp;&nbsp;
-      <a href="#M000095">store</a>&nbsp;&nbsp;
-      <a href="#M000100">successes</a>&nbsp;&nbsp;
-      <a href="#M000102">summary</a>&nbsp;&nbsp;
+      <a href="#M000129">failures</a>&nbsp;&nbsp;
+      <a href="#M000133">get_fail_file_for</a>&nbsp;&nbsp;
+      <a href="#M000134">get_ok_file_for</a>&nbsp;&nbsp;
+      <a href="#M000128">list</a>&nbsp;&nbsp;
+      <a href="#M000124">new</a>&nbsp;&nbsp;
+      <a href="#M000131">new_files</a>&nbsp;&nbsp;
+      <a href="#M000127">reset</a>&nbsp;&nbsp;
+      <a href="#M000126">retry_failures</a>&nbsp;&nbsp;
+      <a href="#M000125">store</a>&nbsp;&nbsp;
+      <a href="#M000130">successes</a>&nbsp;&nbsp;
+      <a href="#M000132">summary</a>&nbsp;&nbsp;
       </div>
     </div>
 
@@ -152,19 +152,19 @@ Allows a collection to be mirrored into the platform
     <div id="methods">
       <h3 class="section-bar">Public Class methods</h3>
 
-      <div id="method-M000094" class="method-detail">
-        <a name="M000094"></a>
+      <div id="method-M000124" class="method-detail">
+        <a name="M000124"></a>
 
         <div class="method-heading">
-          <a href="#M000094" class="method-signature">
+          <a href="#M000124" class="method-signature">
           <span class="method-name">new</span><span class="method-args">(store, dir, rdf_suffix=RDF, ok_suffix=OK, fail_suffix=FAIL, sleep=1)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000094-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000094-source">
+            onclick="toggleCode('M000124-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000124-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 16</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">dir</span>, <span class="ruby-identifier">rdf_suffix</span>=<span class="ruby-constant">RDF</span>, <span class="ruby-identifier">ok_suffix</span>=<span class="ruby-constant">OK</span>, <span class="ruby-identifier">fail_suffix</span>=<span class="ruby-constant">FAIL</span>, <span class="ruby-identifier">sleep</span>=<span class="ruby-value">1</span>)
@@ -182,22 +182,22 @@ Allows a collection to be mirrored into the platform
 
       <h3 class="section-bar">Public Instance methods</h3>
 
-      <div id="method-M000099" class="method-detail">
-        <a name="M000099"></a>
+      <div id="method-M000129" class="method-detail">
+        <a name="M000129"></a>
 
         <div class="method-heading">
-          <a href="#M000099" class="method-signature">
+          <a href="#M000129" class="method-signature">
           <span class="method-name">failures</span><span class="method-args">()</span>
           </a>
         </div>
       
         <div class="method-description">
           <p>
-List <a href="RDFCollection.html#M000099">failures</a>
+List <a href="RDFCollection.html#M000129">failures</a>
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000099-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000099-source">
+            onclick="toggleCode('M000129-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000129-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 62</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">failures</span>()
@@ -212,19 +212,19 @@ List <a href="RDFCollection.html#M000099">failures</a>
         </div>
       </div>
 
-      <div id="method-M000103" class="method-detail">
-        <a name="M000103"></a>
+      <div id="method-M000133" class="method-detail">
+        <a name="M000133"></a>
 
         <div class="method-heading">
-          <a href="#M000103" class="method-signature">
+          <a href="#M000133" class="method-signature">
           <span class="method-name">get_fail_file_for</span><span class="method-args">(filename)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000103-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000103-source">
+            onclick="toggleCode('M000133-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000133-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 103</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_fail_file_for</span>(<span class="ruby-identifier">filename</span>)
@@ -235,19 +235,19 @@ List <a href="RDFCollection.html#M000099">failures</a>
         </div>
       </div>
 
-      <div id="method-M000104" class="method-detail">
-        <a name="M000104"></a>
+      <div id="method-M000134" class="method-detail">
+        <a name="M000134"></a>
 
         <div class="method-heading">
-          <a href="#M000104" class="method-signature">
+          <a href="#M000134" class="method-signature">
           <span class="method-name">get_ok_file_for</span><span class="method-args">(filename)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000104-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000104-source">
+            onclick="toggleCode('M000134-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000134-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 107</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_ok_file_for</span>(<span class="ruby-identifier">filename</span>)
@@ -258,11 +258,11 @@ List <a href="RDFCollection.html#M000099">failures</a>
         </div>
       </div>
 
-      <div id="method-M000098" class="method-detail">
-        <a name="M000098"></a>
+      <div id="method-M000128" class="method-detail">
+        <a name="M000128"></a>
 
         <div class="method-heading">
-          <a href="#M000098" class="method-signature">
+          <a href="#M000128" class="method-signature">
           <span class="method-name">list</span><span class="method-args">()</span>
           </a>
         </div>
@@ -272,8 +272,8 @@ List <a href="RDFCollection.html#M000099">failures</a>
 List files being managed
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000098-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000098-source">
+            onclick="toggleCode('M000128-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000128-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 57</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">list</span>()
@@ -284,23 +284,23 @@ List files being managed
         </div>
       </div>
 
-      <div id="method-M000101" class="method-detail">
-        <a name="M000101"></a>
+      <div id="method-M000131" class="method-detail">
+        <a name="M000131"></a>
 
         <div class="method-heading">
-          <a href="#M000101" class="method-signature">
+          <a href="#M000131" class="method-signature">
           <span class="method-name">new_files</span><span class="method-args">()</span>
           </a>
         </div>
       
         <div class="method-description">
           <p>
-List any <a href="RDFCollection.html#M000094">new</a> files in the
+List any <a href="RDFCollection.html#M000124">new</a> files in the
 directory
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000101-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000101-source">
+            onclick="toggleCode('M000131-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000131-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 80</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">new_files</span>()
@@ -319,11 +319,11 @@ directory
         </div>
       </div>
 
-      <div id="method-M000097" class="method-detail">
-        <a name="M000097"></a>
+      <div id="method-M000127" class="method-detail">
+        <a name="M000127"></a>
 
         <div class="method-heading">
-          <a href="#M000097" class="method-signature">
+          <a href="#M000127" class="method-signature">
           <span class="method-name">reset</span><span class="method-args">(reset_store=false)</span>
           </a>
         </div>
@@ -332,12 +332,12 @@ directory
           <p>
 Reset the directory to clear out any previous statuses <a
 href="Store.html">Store</a> can also be <a
-href="RDFCollection.html#M000097">reset</a> at the same time: use with
+href="RDFCollection.html#M000127">reset</a> at the same time: use with
 care!
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000097-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000097-source">
+            onclick="toggleCode('M000127-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000127-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 47</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">reset</span>(<span class="ruby-identifier">reset_store</span>=<span class="ruby-keyword kw">false</span>)
@@ -353,11 +353,11 @@ care!
         </div>
       </div>
 
-      <div id="method-M000096" class="method-detail">
-        <a name="M000096"></a>
+      <div id="method-M000126" class="method-detail">
+        <a name="M000126"></a>
 
         <div class="method-heading">
-          <a href="#M000096" class="method-signature">
+          <a href="#M000126" class="method-signature">
           <span class="method-name">retry_failures</span><span class="method-args">()</span>
           </a>
         </div>
@@ -367,8 +367,8 @@ care!
 Retry anything known to have failed
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000096-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000096-source">
+            onclick="toggleCode('M000126-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000126-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 35</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">retry_failures</span>()
@@ -385,11 +385,11 @@ Retry anything known to have failed
         </div>
       </div>
 
-      <div id="method-M000095" class="method-detail">
-        <a name="M000095"></a>
+      <div id="method-M000125" class="method-detail">
+        <a name="M000125"></a>
 
         <div class="method-heading">
-          <a href="#M000095" class="method-signature">
+          <a href="#M000125" class="method-signature">
           <span class="method-name">store</span><span class="method-args">()</span>
           </a>
         </div>
@@ -400,8 +400,8 @@ Retry anything known to have failed
 directory
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000095-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000095-source">
+            onclick="toggleCode('M000125-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000125-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 26</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">store</span>()
@@ -416,22 +416,22 @@ directory
         </div>
       </div>
 
-      <div id="method-M000100" class="method-detail">
-        <a name="M000100"></a>
+      <div id="method-M000130" class="method-detail">
+        <a name="M000130"></a>
 
         <div class="method-heading">
-          <a href="#M000100" class="method-signature">
+          <a href="#M000130" class="method-signature">
           <span class="method-name">successes</span><span class="method-args">()</span>
           </a>
         </div>
       
         <div class="method-description">
           <p>
-List <a href="RDFCollection.html#M000100">successes</a>
+List <a href="RDFCollection.html#M000130">successes</a>
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000100-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000100-source">
+            onclick="toggleCode('M000130-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000130-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 71</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">successes</span>()
@@ -446,11 +446,11 @@ List <a href="RDFCollection.html#M000100">successes</a>
         </div>
       </div>
 
-      <div id="method-M000102" class="method-detail">
-        <a name="M000102"></a>
+      <div id="method-M000132" class="method-detail">
+        <a name="M000132"></a>
 
         <div class="method-heading">
-          <a href="#M000102" class="method-signature">
+          <a href="#M000132" class="method-signature">
           <span class="method-name">summary</span><span class="method-args">()</span>
           </a>
         </div>
@@ -461,8 +461,8 @@ Summarize the state of the collection to the provied IO object Creates a
 simple report
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000102-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000102-source">
+            onclick="toggleCode('M000132-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000132-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 94</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">summary</span>()