pho 0.4.1 → 0.5

data/doc/rdoc/classes/Pho/QueryProfile.html

@@ -98,16 +98,16 @@ href="Store.html">Store</a> methods.
       <h3 class="section-bar">Methods</h3>
 
       <div class="name-list">
-      <a href="#M000056">&lt;&lt;</a>&nbsp;&nbsp;
-      <a href="#M000054">create_weighting</a>&nbsp;&nbsp;
-      <a href="#M000057">get_by_name</a>&nbsp;&nbsp;
-      <a href="#M000060">mapped_name?</a>&nbsp;&nbsp;
-      <a href="#M000055">new</a>&nbsp;&nbsp;
-      <a href="#M000053">read_from_store</a>&nbsp;&nbsp;
-      <a href="#M000059">remove</a>&nbsp;&nbsp;
-      <a href="#M000058">remove_by_name</a>&nbsp;&nbsp;
-      <a href="#M000061">to_rdf</a>&nbsp;&nbsp;
-      <a href="#M000062">upload</a>&nbsp;&nbsp;
+      <a href="#M000103">&lt;&lt;</a>&nbsp;&nbsp;
+      <a href="#M000101">create_weighting</a>&nbsp;&nbsp;
+      <a href="#M000104">get_by_name</a>&nbsp;&nbsp;
+      <a href="#M000107">mapped_name?</a>&nbsp;&nbsp;
+      <a href="#M000102">new</a>&nbsp;&nbsp;
+      <a href="#M000100">read_from_store</a>&nbsp;&nbsp;
+      <a href="#M000106">remove</a>&nbsp;&nbsp;
+      <a href="#M000105">remove_by_name</a>&nbsp;&nbsp;
+      <a href="#M000108">to_rdf</a>&nbsp;&nbsp;
+      <a href="#M000109">upload</a>&nbsp;&nbsp;
       </div>
     </div>
 
@@ -161,11 +161,11 @@ URI for this resource
     <div id="methods">
       <h3 class="section-bar">Public Class methods</h3>
 
-      <div id="method-M000054" class="method-detail">
-        <a name="M000054"></a>
+      <div id="method-M000101" class="method-detail">
+        <a name="M000101"></a>
 
         <div class="method-heading">
-          <a href="#M000054" class="method-signature">
+          <a href="#M000101" class="method-signature">
           <span class="method-name">create_weighting</span><span class="method-args">(store, name, weight)</span>
           </a>
         </div>
@@ -188,8 +188,8 @@ according to the Platform naming rules
 </td></tr>
 </table>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000054-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000054-source">
+            onclick="toggleCode('M000101-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000101-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 84</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-constant">QueryProfile</span>.<span class="ruby-identifier">create_weighting</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">name</span>, <span class="ruby-identifier">weight</span>)
@@ -206,19 +206,19 @@ according to the Platform naming rules
         </div>
       </div>
 
-      <div id="method-M000055" class="method-detail">
-        <a name="M000055"></a>
+      <div id="method-M000102" class="method-detail">
+        <a name="M000102"></a>
 
         <div class="method-heading">
-          <a href="#M000055" class="method-signature">
+          <a href="#M000102" class="method-signature">
           <span class="method-name">new</span><span class="method-args">(uri, label, field_weights=Array.new)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000055-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000055-source">
+            onclick="toggleCode('M000102-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000102-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 94</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">uri</span>, <span class="ruby-identifier">label</span>, <span class="ruby-identifier">field_weights</span>=<span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>)
@@ -231,19 +231,19 @@ according to the Platform naming rules
         </div>
       </div>
 
-      <div id="method-M000053" class="method-detail">
-        <a name="M000053"></a>
+      <div id="method-M000100" class="method-detail">
+        <a name="M000100"></a>
 
         <div class="method-heading">
-          <a href="#M000053" class="method-signature">
+          <a href="#M000100" class="method-signature">
           <span class="method-name">read_from_store</span><span class="method-args">(store)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000053-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000053-source">
+            onclick="toggleCode('M000100-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000100-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 53</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-constant">QueryProfile</span>.<span class="ruby-identifier">read_from_store</span>(<span class="ruby-identifier">store</span>)
@@ -277,19 +277,19 @@ according to the Platform naming rules
 
       <h3 class="section-bar">Public Instance methods</h3>
 
-      <div id="method-M000056" class="method-detail">
-        <a name="M000056"></a>
+      <div id="method-M000103" class="method-detail">
+        <a name="M000103"></a>
 
         <div class="method-heading">
-          <a href="#M000056" class="method-signature">
+          <a href="#M000103" class="method-signature">
           <span class="method-name">&lt;&lt;</span><span class="method-args">(weight)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000056-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000056-source">
+            onclick="toggleCode('M000103-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000103-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 100</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-operator">&lt;&lt;</span>(<span class="ruby-identifier">weight</span>)
@@ -300,11 +300,11 @@ according to the Platform naming rules
         </div>
       </div>
 
-      <div id="method-M000057" class="method-detail">
-        <a name="M000057"></a>
+      <div id="method-M000104" class="method-detail">
+        <a name="M000104"></a>
 
         <div class="method-heading">
-          <a href="#M000057" class="method-signature">
+          <a href="#M000104" class="method-signature">
           <span class="method-name">get_by_name</span><span class="method-args">(name)</span>
           </a>
         </div>
@@ -314,8 +314,8 @@ according to the Platform naming rules
 Retrieve a FieldWeighing by name
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000057-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000057-source">
+            onclick="toggleCode('M000104-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000104-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 105</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_by_name</span>(<span class="ruby-identifier">name</span>)
@@ -326,11 +326,11 @@ Retrieve a FieldWeighing by name
         </div>
       </div>
 
-      <div id="method-M000060" class="method-detail">
-        <a name="M000060"></a>
+      <div id="method-M000107" class="method-detail">
+        <a name="M000107"></a>
 
         <div class="method-heading">
-          <a href="#M000060" class="method-signature">
+          <a href="#M000107" class="method-signature">
           <span class="method-name">mapped_name?</span><span class="method-args">(name)</span>
           </a>
         </div>
@@ -340,8 +340,8 @@ Retrieve a FieldWeighing by name
 Is there a field weighting for a property with this name?
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000060-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000060-source">
+            onclick="toggleCode('M000107-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000107-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 123</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">mapped_name?</span>(<span class="ruby-identifier">name</span>)
@@ -352,11 +352,11 @@ Is there a field weighting for a property with this name?
         </div>
       </div>
 
-      <div id="method-M000059" class="method-detail">
-        <a name="M000059"></a>
+      <div id="method-M000106" class="method-detail">
+        <a name="M000106"></a>
 
         <div class="method-heading">
-          <a href="#M000059" class="method-signature">
+          <a href="#M000106" class="method-signature">
           <span class="method-name">remove</span><span class="method-args">(fw)</span>
           </a>
         </div>
@@ -367,8 +367,8 @@ Remove a <a href="FieldWeighting.html">FieldWeighting</a> from the
 collection
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000059-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000059-source">
+            onclick="toggleCode('M000106-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000106-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 118</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">remove</span>(<span class="ruby-identifier">fw</span>)
@@ -379,11 +379,11 @@ collection
         </div>
       </div>
 
-      <div id="method-M000058" class="method-detail">
-        <a name="M000058"></a>
+      <div id="method-M000105" class="method-detail">
+        <a name="M000105"></a>
 
         <div class="method-heading">
-          <a href="#M000058" class="method-signature">
+          <a href="#M000105" class="method-signature">
           <span class="method-name">remove_by_name</span><span class="method-args">(name)</span>
           </a>
         </div>
@@ -393,8 +393,8 @@ collection
 Remove a <a href="FieldWeighting.html">FieldWeighting</a> by name
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000058-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000058-source">
+            onclick="toggleCode('M000105-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000105-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 110</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">remove_by_name</span>(<span class="ruby-identifier">name</span>)
@@ -408,11 +408,11 @@ Remove a <a href="FieldWeighting.html">FieldWeighting</a> by name
         </div>
       </div>
 
-      <div id="method-M000061" class="method-detail">
-        <a name="M000061"></a>
+      <div id="method-M000108" class="method-detail">
+        <a name="M000108"></a>
 
         <div class="method-heading">
-          <a href="#M000061" class="method-signature">
+          <a href="#M000108" class="method-signature">
           <span class="method-name">to_rdf</span><span class="method-args">()</span>
           </a>
         </div>
@@ -423,8 +423,8 @@ Dump this object to an RDF/XML representation suitable for submitting to
 the Platform
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000061-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000061-source">
+            onclick="toggleCode('M000108-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000108-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 128</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">to_rdf</span>
@@ -455,11 +455,11 @@ the Platform
         </div>
       </div>
 
-      <div id="method-M000062" class="method-detail">
-        <a name="M000062"></a>
+      <div id="method-M000109" class="method-detail">
+        <a name="M000109"></a>
 
         <div class="method-heading">
-          <a href="#M000062" class="method-signature">
+          <a href="#M000109" class="method-signature">
           <span class="method-name">upload</span><span class="method-args">(store)</span>
           </a>
         </div>
@@ -470,8 +470,8 @@ Upload an RDF/XML presentation of this object to the provided Platform <a
 href="Store.html">Store</a>
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000062-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000062-source">
+            onclick="toggleCode('M000109-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000109-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/query_profile.rb, line 153</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">upload</span>(<span class="ruby-identifier">store</span>)

data/doc/rdoc/classes/Pho/RDFCollection.html

@@ -65,7 +65,9 @@
         <tr class="top-aligned-row">
             <td><strong>Parent:</strong></td>
             <td>
-                Object
+                <a href="FileManagement/RDFManager.html">
+                Pho::FileManagement::RDFManager
+               </a>
             </td>
         </tr>
         </table>
@@ -80,12 +82,7 @@
 
     <div id="description">
       <p>
-Provides a simple mechanism for managing a directory of RDF/XML documents
-and uploading them to platform <a
-href="RDFCollection.html#M000125">store</a>.
-</p>
-<p>
-Allows a collection to be mirrored into the platform
+Deprecated. Use Pho::FileManangement::RDFManager instead
 </p>
 
     </div>
@@ -93,23 +90,6 @@ Allows a collection to be mirrored into the platform
 
    </div>
 
-    <div id="method-list">
-      <h3 class="section-bar">Methods</h3>
-
-      <div class="name-list">
-      <a href="#M000129">failures</a>&nbsp;&nbsp;
-      <a href="#M000133">get_fail_file_for</a>&nbsp;&nbsp;
-      <a href="#M000134">get_ok_file_for</a>&nbsp;&nbsp;
-      <a href="#M000128">list</a>&nbsp;&nbsp;
-      <a href="#M000124">new</a>&nbsp;&nbsp;
-      <a href="#M000131">new_files</a>&nbsp;&nbsp;
-      <a href="#M000127">reset</a>&nbsp;&nbsp;
-      <a href="#M000126">retry_failures</a>&nbsp;&nbsp;
-      <a href="#M000125">store</a>&nbsp;&nbsp;
-      <a href="#M000130">successes</a>&nbsp;&nbsp;
-      <a href="#M000132">summary</a>&nbsp;&nbsp;
-      </div>
-    </div>
 
   </div>
 
@@ -119,29 +99,6 @@ Allows a collection to be mirrored into the platform
     <div id="section">
 
 
-    <div id="constants-list">
-      <h3 class="section-bar">Constants</h3>
-
-      <div class="name-list">
-        <table summary="Constants">
-        <tr class="top-aligned-row context-row">
-          <td class="context-item-name">RDF</td>
-          <td>=</td>
-          <td class="context-item-value">&quot;rdf&quot;.freeze</td>
-        </tr>
-        <tr class="top-aligned-row context-row">
-          <td class="context-item-name">OK</td>
-          <td>=</td>
-          <td class="context-item-value">&quot;ok&quot;.freeze</td>
-        </tr>
-        <tr class="top-aligned-row context-row">
-          <td class="context-item-name">FAIL</td>
-          <td>=</td>
-          <td class="context-item-value">&quot;fail&quot;.freeze</td>
-        </tr>
-        </table>
-      </div>
-    </div>
 
 
 
@@ -149,337 +106,6 @@ Allows a collection to be mirrored into the platform
 
 
     <!-- if method_list -->
-    <div id="methods">
-      <h3 class="section-bar">Public Class methods</h3>
-
-      <div id="method-M000124" class="method-detail">
-        <a name="M000124"></a>
-
-        <div class="method-heading">
-          <a href="#M000124" class="method-signature">
-          <span class="method-name">new</span><span class="method-args">(store, dir, rdf_suffix=RDF, ok_suffix=OK, fail_suffix=FAIL, sleep=1)</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000124-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000124-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 16</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">dir</span>, <span class="ruby-identifier">rdf_suffix</span>=<span class="ruby-constant">RDF</span>, <span class="ruby-identifier">ok_suffix</span>=<span class="ruby-constant">OK</span>, <span class="ruby-identifier">fail_suffix</span>=<span class="ruby-constant">FAIL</span>, <span class="ruby-identifier">sleep</span>=<span class="ruby-value">1</span>)
-      <span class="ruby-ivar">@store</span> = <span class="ruby-identifier">store</span>
-      <span class="ruby-ivar">@dir</span> = <span class="ruby-identifier">dir</span>
-      <span class="ruby-ivar">@sleep</span> = <span class="ruby-identifier">sleep</span>
-      <span class="ruby-ivar">@rdf_suffix</span> = <span class="ruby-identifier">rdf_suffix</span>
-      <span class="ruby-ivar">@ok_suffix</span> = <span class="ruby-identifier">ok_suffix</span>
-      <span class="ruby-ivar">@fail_suffix</span> = <span class="ruby-identifier">fail_suffix</span>
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-      <h3 class="section-bar">Public Instance methods</h3>
-
-      <div id="method-M000129" class="method-detail">
-        <a name="M000129"></a>
-
-        <div class="method-heading">
-          <a href="#M000129" class="method-signature">
-          <span class="method-name">failures</span><span class="method-args">()</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p>
-List <a href="RDFCollection.html#M000129">failures</a>
-</p>
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000129-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000129-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 62</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">failures</span>()
-      <span class="ruby-identifier">fails</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>
-      <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-node">&quot;*.#{@fail_suffix}&quot;</span>) ).<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">file</span><span class="ruby-operator">|</span>
-        <span class="ruby-identifier">fails</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-identifier">file</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-node">/\.#{@fail_suffix}/</span>, <span class="ruby-node">&quot;.#{@rdf_suffix}&quot;</span>)
-      <span class="ruby-keyword kw">end</span>
-      <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">fails</span>
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-      <div id="method-M000133" class="method-detail">
-        <a name="M000133"></a>
-
-        <div class="method-heading">
-          <a href="#M000133" class="method-signature">
-          <span class="method-name">get_fail_file_for</span><span class="method-args">(filename)</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000133-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000133-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 103</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_fail_file_for</span>(<span class="ruby-identifier">filename</span>)
-      <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">filename</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-node">/\.#{@rdf_suffix}/</span>, <span class="ruby-node">&quot;.#{@fail_suffix}&quot;</span>)              
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-      <div id="method-M000134" class="method-detail">
-        <a name="M000134"></a>
-
-        <div class="method-heading">
-          <a href="#M000134" class="method-signature">
-          <span class="method-name">get_ok_file_for</span><span class="method-args">(filename)</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000134-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000134-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 107</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_ok_file_for</span>(<span class="ruby-identifier">filename</span>)
-      <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">filename</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-node">/\.#{@rdf_suffix}/</span>, <span class="ruby-node">&quot;.#{@ok_suffix}&quot;</span>)
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-      <div id="method-M000128" class="method-detail">
-        <a name="M000128"></a>
-
-        <div class="method-heading">
-          <a href="#M000128" class="method-signature">
-          <span class="method-name">list</span><span class="method-args">()</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p>
-List files being managed
-</p>
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000128-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000128-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 57</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">list</span>()
-        <span class="ruby-keyword kw">return</span> <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-node">&quot;*.#{@rdf_suffix}&quot;</span>) )  
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-      <div id="method-M000131" class="method-detail">
-        <a name="M000131"></a>
-
-        <div class="method-heading">
-          <a href="#M000131" class="method-signature">
-          <span class="method-name">new_files</span><span class="method-args">()</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p>
-List any <a href="RDFCollection.html#M000124">new</a> files in the
-directory
-</p>
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000131-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000131-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 80</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">new_files</span>()
-      <span class="ruby-identifier">newfiles</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>
-      <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-node">&quot;*.#{@rdf_suffix}&quot;</span>) ) <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">file</span><span class="ruby-operator">|</span>
-        <span class="ruby-identifier">ok_file</span> = <span class="ruby-identifier">get_ok_file_for</span>(<span class="ruby-identifier">file</span>)
-        <span class="ruby-identifier">fail_file</span> = <span class="ruby-identifier">get_fail_file_for</span>(<span class="ruby-identifier">file</span>)
-        <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">exists?</span>(<span class="ruby-identifier">ok_file</span>) <span class="ruby-keyword kw">or</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">exists?</span>(<span class="ruby-identifier">fail_file</span>) )
-          <span class="ruby-identifier">newfiles</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-identifier">file</span>          
-        <span class="ruby-keyword kw">end</span>
-      <span class="ruby-keyword kw">end</span>
-      <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">newfiles</span>
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-      <div id="method-M000127" class="method-detail">
-        <a name="M000127"></a>
-
-        <div class="method-heading">
-          <a href="#M000127" class="method-signature">
-          <span class="method-name">reset</span><span class="method-args">(reset_store=false)</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p>
-Reset the directory to clear out any previous statuses <a
-href="Store.html">Store</a> can also be <a
-href="RDFCollection.html#M000127">reset</a> at the same time: use with
-care!
-</p>
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000127-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000127-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 47</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">reset</span>(<span class="ruby-identifier">reset_store</span>=<span class="ruby-keyword kw">false</span>)
-      <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-node">&quot;*.#{@fail_suffix}&quot;</span>) ).<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">file</span><span class="ruby-operator">|</span>
-        <span class="ruby-constant">File</span>.<span class="ruby-identifier">delete</span>(<span class="ruby-identifier">file</span>)
-      <span class="ruby-keyword kw">end</span>
-      <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-node">&quot;*.#{@ok_suffix}&quot;</span>) ).<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">file</span><span class="ruby-operator">|</span>
-        <span class="ruby-constant">File</span>.<span class="ruby-identifier">delete</span>(<span class="ruby-identifier">file</span>)
-      <span class="ruby-keyword kw">end</span>         
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-      <div id="method-M000126" class="method-detail">
-        <a name="M000126"></a>
-
-        <div class="method-heading">
-          <a href="#M000126" class="method-signature">
-          <span class="method-name">retry_failures</span><span class="method-args">()</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p>
-Retry anything known to have failed
-</p>
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000126-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000126-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 35</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">retry_failures</span>()
-      <span class="ruby-identifier">retries</span> = <span class="ruby-identifier">failures</span>()
-      <span class="ruby-identifier">retries</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">filename</span><span class="ruby-operator">|</span>
-        <span class="ruby-constant">File</span>.<span class="ruby-identifier">delete</span>( <span class="ruby-identifier">get_fail_file_for</span>(<span class="ruby-identifier">filename</span>) )
-        <span class="ruby-comment cmt">#store it</span>
-        <span class="ruby-identifier">file</span> = <span class="ruby-constant">File</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">filename</span>)
-        <span class="ruby-identifier">store_file</span>(<span class="ruby-identifier">file</span>, <span class="ruby-identifier">filename</span>)      
-      <span class="ruby-keyword kw">end</span>
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-      <div id="method-M000125" class="method-detail">
-        <a name="M000125"></a>
-
-        <div class="method-heading">
-          <a href="#M000125" class="method-signature">
-          <span class="method-name">store</span><span class="method-args">()</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p>
-<a href="Store.html">Store</a> all files that match the file name in
-directory
-</p>
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000125-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000125-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 26</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">store</span>()
-      <span class="ruby-identifier">files_to_store</span> = <span class="ruby-identifier">new_files</span>()
-      <span class="ruby-identifier">files_to_store</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">filename</span><span class="ruby-operator">|</span>
-        <span class="ruby-identifier">file</span> = <span class="ruby-constant">File</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">filename</span>)
-        <span class="ruby-identifier">store_file</span>(<span class="ruby-identifier">file</span>, <span class="ruby-identifier">filename</span>)
-      <span class="ruby-keyword kw">end</span>    
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-      <div id="method-M000130" class="method-detail">
-        <a name="M000130"></a>
-
-        <div class="method-heading">
-          <a href="#M000130" class="method-signature">
-          <span class="method-name">successes</span><span class="method-args">()</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p>
-List <a href="RDFCollection.html#M000130">successes</a>
-</p>
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000130-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000130-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 71</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">successes</span>()
-      <span class="ruby-identifier">successes</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>
-      <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-node">&quot;*.#{@ok_suffix}&quot;</span>) ).<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">file</span><span class="ruby-operator">|</span>
-        <span class="ruby-identifier">successes</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-identifier">file</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-node">/\.#{@ok_suffix}/</span>, <span class="ruby-node">&quot;.#{@rdf_suffix}&quot;</span>)
-      <span class="ruby-keyword kw">end</span>
-      <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">successes</span>
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-      <div id="method-M000132" class="method-detail">
-        <a name="M000132"></a>
-
-        <div class="method-heading">
-          <a href="#M000132" class="method-signature">
-          <span class="method-name">summary</span><span class="method-args">()</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p>
-Summarize the state of the collection to the provied IO object Creates a
-simple report
-</p>
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000132-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000132-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 94</span>
-    <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">summary</span>()
-       <span class="ruby-identifier">failures</span> = <span class="ruby-identifier">failures</span>()
-       <span class="ruby-identifier">successes</span> = <span class="ruby-identifier">successes</span>()
-       <span class="ruby-identifier">newfiles</span> = <span class="ruby-identifier">new_files</span>()
-       <span class="ruby-identifier">total</span> = <span class="ruby-identifier">failures</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">successes</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">newfiles</span>.<span class="ruby-identifier">size</span>
-       <span class="ruby-identifier">summary</span> = <span class="ruby-node">&quot;#{@dir} contains #{total} files: #{successes.size} stored, #{failures.size} failed, #{newfiles.size} new&quot;</span>
-       <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">summary</span>     
-    <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
-
-    </div>
 
 
   </div>