pharmaobservatory 0.1.4 → 0.1.6

data/lib/pharmaobservatory/models/biomarker_assay_whitespace_row.rb

@@ -0,0 +1,499 @@
+=begin
+#Pharma Observatory Public REST API
+
+#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
+
+The version of the OpenAPI document: 1.0.0
+
+Generated by: https://openapi-generator.tech
+Generator version: 7.13.0
+
+=end
+
+require 'date'
+require 'time'
+
+module PharmaObservatory
+  # One row of the biomarker_assay_whitespace dataset: one row per gene that has evidence or a supplier survey signal. A grouped request returns the group columns and the measures instead, as additional properties.
+  class BiomarkerAssayWhitespaceRow
+    # The gene's biomarker key.
+    attr_accessor :biomarker_id
+
+    # The gene's route key, the entry key for the biomarkers object type; the gene symbol.
+    attr_accessor :route_key
+
+    # The gene symbol.
+    attr_accessor :gene_symbol
+
+    # The gene's display name.
+    attr_accessor :biomarker_display_name
+
+    # Whether the gene's identity is confirmed.
+    attr_accessor :biomarker_identity_status
+
+    # The target's Ensembl gene id; null when the gene does not resolve one, in which case the pipeline columns are null.
+    attr_accessor :target_id
+
+    # The classification, one of nine values crossing gene_evidence_tier with gene_supply_status. Labels: no_evidence_no_supply 'No evidence, explicit no-assay'; no_evidence_supply_ambiguous 'No evidence, ambiguous supply'; supply_no_evidence 'Supply declared, no evidence'; literature_evidence_no_supply 'Literature evidence, no confirmed supply'; literature_evidence_supply_ambiguous 'Literature evidence, ambiguous supply'; literature_evidence_served 'Literature evidence, supply declared'; validated_evidence_no_supply 'Validated-ladder evidence, no confirmed supply'; validated_evidence_supply_ambiguous 'Validated-ladder evidence, ambiguous supply'; served 'Validated-ladder evidence, supply declared'.
+    attr_accessor :whitespace_bucket
+
+    # The rule that assigned the bucket, one rule per bucket.
+    attr_accessor :whitespace_bucket_rule_id
+
+    # Evidence axis, a precedence and not a score. validated: at least one row of the validation ladder (biomarker_validation) for the gene. literature_only: no validated row but at least one extracted PubMed assay fact. none: neither.
+    attr_accessor :gene_evidence_tier
+
+    # Supply axis, a precedence. declared_positive: a supplier declares an assay (validated or not). declared_ambiguous: a response conflicts or gives detail with no option chosen. declared_no_assay: a supplier answered that it has no assay. not_on_survey: no answer at all.
+    attr_accessor :gene_supply_status
+
+    # Rows of the validation ladder for the gene (biomarker_validation). A count, not a score, and not combined with the literature count.
+    attr_accessor :validated_evidence_row_count
+
+    # Extracted PubMed assay facts resolved to the gene (biomarker_assay_evidence). A count, not a score.
+    attr_accessor :literature_evidence_row_count
+
+    # The sorted set of evidence types behind the gene's evidence, including literature_assay_validation when literature evidence exists. A set, never a rank.
+    attr_accessor :evidence_types_present
+
+    # The sorted set of validation ladder rule ids behind the validated evidence. For display; do not derive a rank from it.
+    attr_accessor :evidence_tier_rule_ids_present
+
+    # biomarker_validation_id values of the validated evidence. Empty when gene_evidence_tier is not validated.
+    attr_accessor :evidence_validation_ids
+
+    # biomarker_assay_evidence_id values of the extracted PubMed facts. Populated whichever evidence tier governs the bucket.
+    attr_accessor :literature_evidence_ids
+
+    # The source document ids behind literature_evidence_ids.
+    attr_accessor :literature_evidence_document_ids
+
+    # Ids of the supplier survey declarations behind gene_supply_status (the winning precedence tier). Empty when not_on_survey. The declarations are not a published dataset.
+    attr_accessor :supplier_declaration_ids
+
+    # Supplier declarations that an assay exists, validated or unvalidated, for the gene.
+    attr_accessor :supplier_positive_response_count
+
+    # Declarations whose own cells disagree.
+    attr_accessor :supplier_conflicting_response_count
+
+    # Declarations that give free text and no selected option.
+    attr_accessor :supplier_detail_only_response_count
+
+    # Declarations that the supplier has no assay for the gene.
+    attr_accessor :supplier_no_assay_response_count
+
+    # Drug programs against the gene's target across every phase band. Null means the gene has no target row, never zero activity. Heat only; not part of the bucket.
+    attr_accessor :pipeline_program_count
+
+    # Active drug programs against the gene's target. Same nullability as pipeline_program_count.
+    attr_accessor :pipeline_active_program_count
+
+    # The highest phase band (0 to 4) any program against the target reached; the app maps it to a phase label. Null as pipeline_program_count.
+    attr_accessor :pipeline_max_phase
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'biomarker_id' => :'biomarker_id',
+        :'route_key' => :'route_key',
+        :'gene_symbol' => :'gene_symbol',
+        :'biomarker_display_name' => :'biomarker_display_name',
+        :'biomarker_identity_status' => :'biomarker_identity_status',
+        :'target_id' => :'target_id',
+        :'whitespace_bucket' => :'whitespace_bucket',
+        :'whitespace_bucket_rule_id' => :'whitespace_bucket_rule_id',
+        :'gene_evidence_tier' => :'gene_evidence_tier',
+        :'gene_supply_status' => :'gene_supply_status',
+        :'validated_evidence_row_count' => :'validated_evidence_row_count',
+        :'literature_evidence_row_count' => :'literature_evidence_row_count',
+        :'evidence_types_present' => :'evidence_types_present',
+        :'evidence_tier_rule_ids_present' => :'evidence_tier_rule_ids_present',
+        :'evidence_validation_ids' => :'evidence_validation_ids',
+        :'literature_evidence_ids' => :'literature_evidence_ids',
+        :'literature_evidence_document_ids' => :'literature_evidence_document_ids',
+        :'supplier_declaration_ids' => :'supplier_declaration_ids',
+        :'supplier_positive_response_count' => :'supplier_positive_response_count',
+        :'supplier_conflicting_response_count' => :'supplier_conflicting_response_count',
+        :'supplier_detail_only_response_count' => :'supplier_detail_only_response_count',
+        :'supplier_no_assay_response_count' => :'supplier_no_assay_response_count',
+        :'pipeline_program_count' => :'pipeline_program_count',
+        :'pipeline_active_program_count' => :'pipeline_active_program_count',
+        :'pipeline_max_phase' => :'pipeline_max_phase'
+      }
+    end
+
+    # Returns attribute mapping this model knows about
+    def self.acceptable_attribute_map
+      attribute_map
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      acceptable_attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'biomarker_id' => :'String',
+        :'route_key' => :'String',
+        :'gene_symbol' => :'String',
+        :'biomarker_display_name' => :'String',
+        :'biomarker_identity_status' => :'String',
+        :'target_id' => :'String',
+        :'whitespace_bucket' => :'String',
+        :'whitespace_bucket_rule_id' => :'String',
+        :'gene_evidence_tier' => :'String',
+        :'gene_supply_status' => :'String',
+        :'validated_evidence_row_count' => :'Integer',
+        :'literature_evidence_row_count' => :'Integer',
+        :'evidence_types_present' => :'Array<String>',
+        :'evidence_tier_rule_ids_present' => :'Array<String>',
+        :'evidence_validation_ids' => :'Array<String>',
+        :'literature_evidence_ids' => :'Array<String>',
+        :'literature_evidence_document_ids' => :'Array<String>',
+        :'supplier_declaration_ids' => :'Array<String>',
+        :'supplier_positive_response_count' => :'Integer',
+        :'supplier_conflicting_response_count' => :'Integer',
+        :'supplier_detail_only_response_count' => :'Integer',
+        :'supplier_no_assay_response_count' => :'Integer',
+        :'pipeline_program_count' => :'Integer',
+        :'pipeline_active_program_count' => :'Integer',
+        :'pipeline_max_phase' => :'Integer'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+        :'biomarker_id',
+        :'route_key',
+        :'gene_symbol',
+        :'biomarker_display_name',
+        :'biomarker_identity_status',
+        :'target_id',
+        :'whitespace_bucket',
+        :'whitespace_bucket_rule_id',
+        :'gene_evidence_tier',
+        :'gene_supply_status',
+        :'validated_evidence_row_count',
+        :'literature_evidence_row_count',
+        :'evidence_types_present',
+        :'evidence_tier_rule_ids_present',
+        :'evidence_validation_ids',
+        :'literature_evidence_ids',
+        :'literature_evidence_document_ids',
+        :'supplier_declaration_ids',
+        :'supplier_positive_response_count',
+        :'supplier_conflicting_response_count',
+        :'supplier_detail_only_response_count',
+        :'supplier_no_assay_response_count',
+        :'pipeline_program_count',
+        :'pipeline_active_program_count',
+        :'pipeline_max_phase'
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkerAssayWhitespaceRow` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      acceptable_attribute_map = self.class.acceptable_attribute_map
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!acceptable_attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkerAssayWhitespaceRow`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'biomarker_id')
+        self.biomarker_id = attributes[:'biomarker_id']
+      end
+
+      if attributes.key?(:'route_key')
+        self.route_key = attributes[:'route_key']
+      end
+
+      if attributes.key?(:'gene_symbol')
+        self.gene_symbol = attributes[:'gene_symbol']
+      end
+
+      if attributes.key?(:'biomarker_display_name')
+        self.biomarker_display_name = attributes[:'biomarker_display_name']
+      end
+
+      if attributes.key?(:'biomarker_identity_status')
+        self.biomarker_identity_status = attributes[:'biomarker_identity_status']
+      end
+
+      if attributes.key?(:'target_id')
+        self.target_id = attributes[:'target_id']
+      end
+
+      if attributes.key?(:'whitespace_bucket')
+        self.whitespace_bucket = attributes[:'whitespace_bucket']
+      end
+
+      if attributes.key?(:'whitespace_bucket_rule_id')
+        self.whitespace_bucket_rule_id = attributes[:'whitespace_bucket_rule_id']
+      end
+
+      if attributes.key?(:'gene_evidence_tier')
+        self.gene_evidence_tier = attributes[:'gene_evidence_tier']
+      end
+
+      if attributes.key?(:'gene_supply_status')
+        self.gene_supply_status = attributes[:'gene_supply_status']
+      end
+
+      if attributes.key?(:'validated_evidence_row_count')
+        self.validated_evidence_row_count = attributes[:'validated_evidence_row_count']
+      end
+
+      if attributes.key?(:'literature_evidence_row_count')
+        self.literature_evidence_row_count = attributes[:'literature_evidence_row_count']
+      end
+
+      if attributes.key?(:'evidence_types_present')
+        if (value = attributes[:'evidence_types_present']).is_a?(Array)
+          self.evidence_types_present = value
+        end
+      end
+
+      if attributes.key?(:'evidence_tier_rule_ids_present')
+        if (value = attributes[:'evidence_tier_rule_ids_present']).is_a?(Array)
+          self.evidence_tier_rule_ids_present = value
+        end
+      end
+
+      if attributes.key?(:'evidence_validation_ids')
+        if (value = attributes[:'evidence_validation_ids']).is_a?(Array)
+          self.evidence_validation_ids = value
+        end
+      end
+
+      if attributes.key?(:'literature_evidence_ids')
+        if (value = attributes[:'literature_evidence_ids']).is_a?(Array)
+          self.literature_evidence_ids = value
+        end
+      end
+
+      if attributes.key?(:'literature_evidence_document_ids')
+        if (value = attributes[:'literature_evidence_document_ids']).is_a?(Array)
+          self.literature_evidence_document_ids = value
+        end
+      end
+
+      if attributes.key?(:'supplier_declaration_ids')
+        if (value = attributes[:'supplier_declaration_ids']).is_a?(Array)
+          self.supplier_declaration_ids = value
+        end
+      end
+
+      if attributes.key?(:'supplier_positive_response_count')
+        self.supplier_positive_response_count = attributes[:'supplier_positive_response_count']
+      end
+
+      if attributes.key?(:'supplier_conflicting_response_count')
+        self.supplier_conflicting_response_count = attributes[:'supplier_conflicting_response_count']
+      end
+
+      if attributes.key?(:'supplier_detail_only_response_count')
+        self.supplier_detail_only_response_count = attributes[:'supplier_detail_only_response_count']
+      end
+
+      if attributes.key?(:'supplier_no_assay_response_count')
+        self.supplier_no_assay_response_count = attributes[:'supplier_no_assay_response_count']
+      end
+
+      if attributes.key?(:'pipeline_program_count')
+        self.pipeline_program_count = attributes[:'pipeline_program_count']
+      end
+
+      if attributes.key?(:'pipeline_active_program_count')
+        self.pipeline_active_program_count = attributes[:'pipeline_active_program_count']
+      end
+
+      if attributes.key?(:'pipeline_max_phase')
+        self.pipeline_max_phase = attributes[:'pipeline_max_phase']
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      true
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          biomarker_id == o.biomarker_id &&
+          route_key == o.route_key &&
+          gene_symbol == o.gene_symbol &&
+          biomarker_display_name == o.biomarker_display_name &&
+          biomarker_identity_status == o.biomarker_identity_status &&
+          target_id == o.target_id &&
+          whitespace_bucket == o.whitespace_bucket &&
+          whitespace_bucket_rule_id == o.whitespace_bucket_rule_id &&
+          gene_evidence_tier == o.gene_evidence_tier &&
+          gene_supply_status == o.gene_supply_status &&
+          validated_evidence_row_count == o.validated_evidence_row_count &&
+          literature_evidence_row_count == o.literature_evidence_row_count &&
+          evidence_types_present == o.evidence_types_present &&
+          evidence_tier_rule_ids_present == o.evidence_tier_rule_ids_present &&
+          evidence_validation_ids == o.evidence_validation_ids &&
+          literature_evidence_ids == o.literature_evidence_ids &&
+          literature_evidence_document_ids == o.literature_evidence_document_ids &&
+          supplier_declaration_ids == o.supplier_declaration_ids &&
+          supplier_positive_response_count == o.supplier_positive_response_count &&
+          supplier_conflicting_response_count == o.supplier_conflicting_response_count &&
+          supplier_detail_only_response_count == o.supplier_detail_only_response_count &&
+          supplier_no_assay_response_count == o.supplier_no_assay_response_count &&
+          pipeline_program_count == o.pipeline_program_count &&
+          pipeline_active_program_count == o.pipeline_active_program_count &&
+          pipeline_max_phase == o.pipeline_max_phase
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [biomarker_id, route_key, gene_symbol, biomarker_display_name, biomarker_identity_status, target_id, whitespace_bucket, whitespace_bucket_rule_id, gene_evidence_tier, gene_supply_status, validated_evidence_row_count, literature_evidence_row_count, evidence_types_present, evidence_tier_rule_ids_present, evidence_validation_ids, literature_evidence_ids, literature_evidence_document_ids, supplier_declaration_ids, supplier_positive_response_count, supplier_conflicting_response_count, supplier_detail_only_response_count, supplier_no_assay_response_count, pipeline_program_count, pipeline_active_program_count, pipeline_max_phase].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = PharmaObservatory.const_get(type)
+        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end

data/lib/pharmaobservatory/models/biomarker_bqp_assertions_response.rb

@@ -102,7 +102,7 @@ module PharmaObservatory
         :'grain' => :'String',
         :'object_type' => :'String',
         :'id' => :'String',
-        :'scope' => :'BiomarkerCdxAssertionsResponseScope',
+        :'scope' => :'BiomarkerAssayEvidenceResponseScope',
         :'columns' => :'Array<DatasetColumn>',
         :'rows' => :'Array<BiomarkerBqpAssertionsRow>',
         :'total' => :'Integer',
@@ -115,8 +115,8 @@ module PharmaObservatory
         :'source_credit' => :'String',
         :'withheld_tiers' => :'Array<String>',
         :'withheld_columns' => :'Array<String>',
-        :'freshness' => :'BiomarkerCdxAssertionsResponseFreshness',
-        :'build' => :'BiomarkerCdxAssertionsResponseBuild',
+        :'freshness' => :'BiomarkerAssayEvidenceResponseFreshness',
+        :'build' => :'BiomarkerAssayEvidenceResponseBuild',
         :'build_state' => :'DatasetBuildState',
         :'restriction' => :'Hash<String, Object>'
       }

data/lib/pharmaobservatory/models/biomarker_cdx_assertions_response.rb

@@ -102,7 +102,7 @@ module PharmaObservatory
         :'grain' => :'String',
         :'object_type' => :'String',
         :'id' => :'String',
-        :'scope' => :'BiomarkerCdxAssertionsResponseScope',
+        :'scope' => :'BiomarkerAssayEvidenceResponseScope',
         :'columns' => :'Array<DatasetColumn>',
         :'rows' => :'Array<BiomarkerCdxAssertionsRow>',
         :'total' => :'Integer',
@@ -115,8 +115,8 @@ module PharmaObservatory
         :'source_credit' => :'String',
         :'withheld_tiers' => :'Array<String>',
         :'withheld_columns' => :'Array<String>',
-        :'freshness' => :'BiomarkerCdxAssertionsResponseFreshness',
-        :'build' => :'BiomarkerCdxAssertionsResponseBuild',
+        :'freshness' => :'BiomarkerAssayEvidenceResponseFreshness',
+        :'build' => :'BiomarkerAssayEvidenceResponseBuild',
         :'build_state' => :'DatasetBuildState',
         :'restriction' => :'Hash<String, Object>'
       }

data/lib/pharmaobservatory/models/biomarker_evidence_response.rb

@@ -102,7 +102,7 @@ module PharmaObservatory
         :'grain' => :'String',
         :'object_type' => :'String',
         :'id' => :'String',
-        :'scope' => :'BiomarkerCdxAssertionsResponseScope',
+        :'scope' => :'BiomarkerAssayEvidenceResponseScope',
         :'columns' => :'Array<DatasetColumn>',
         :'rows' => :'Array<BiomarkerEvidenceRow>',
         :'total' => :'Integer',
@@ -115,8 +115,8 @@ module PharmaObservatory
         :'source_credit' => :'String',
         :'withheld_tiers' => :'Array<String>',
         :'withheld_columns' => :'Array<String>',
-        :'freshness' => :'BiomarkerCdxAssertionsResponseFreshness',
-        :'build' => :'BiomarkerCdxAssertionsResponseBuild',
+        :'freshness' => :'BiomarkerAssayEvidenceResponseFreshness',
+        :'build' => :'BiomarkerAssayEvidenceResponseBuild',
         :'build_state' => :'DatasetBuildState',
         :'restriction' => :'Hash<String, Object>'
       }

data/lib/pharmaobservatory/models/biomarker_literature_response.rb

@@ -102,7 +102,7 @@ module PharmaObservatory
         :'grain' => :'String',
         :'object_type' => :'String',
         :'id' => :'String',
-        :'scope' => :'BiomarkerCdxAssertionsResponseScope',
+        :'scope' => :'BiomarkerAssayEvidenceResponseScope',
         :'columns' => :'Array<DatasetColumn>',
         :'rows' => :'Array<BiomarkerLiteratureRow>',
         :'total' => :'Integer',
@@ -115,8 +115,8 @@ module PharmaObservatory
         :'source_credit' => :'String',
         :'withheld_tiers' => :'Array<String>',
         :'withheld_columns' => :'Array<String>',
-        :'freshness' => :'BiomarkerCdxAssertionsResponseFreshness',
-        :'build' => :'BiomarkerCdxAssertionsResponseBuild',
+        :'freshness' => :'BiomarkerAssayEvidenceResponseFreshness',
+        :'build' => :'BiomarkerAssayEvidenceResponseBuild',
         :'build_state' => :'DatasetBuildState',
         :'restriction' => :'Hash<String, Object>'
       }

data/lib/pharmaobservatory/models/biomarker_publishing_companies_response.rb

@@ -102,7 +102,7 @@ module PharmaObservatory
         :'grain' => :'String',
         :'object_type' => :'String',
         :'id' => :'String',
-        :'scope' => :'BiomarkerCdxAssertionsResponseScope',
+        :'scope' => :'BiomarkerAssayEvidenceResponseScope',
         :'columns' => :'Array<DatasetColumn>',
         :'rows' => :'Array<BiomarkerPublishingCompaniesRow>',
         :'total' => :'Integer',
@@ -115,8 +115,8 @@ module PharmaObservatory
         :'source_credit' => :'String',
         :'withheld_tiers' => :'Array<String>',
         :'withheld_columns' => :'Array<String>',
-        :'freshness' => :'BiomarkerCdxAssertionsResponseFreshness',
-        :'build' => :'BiomarkerCdxAssertionsResponseBuild',
+        :'freshness' => :'BiomarkerAssayEvidenceResponseFreshness',
+        :'build' => :'BiomarkerAssayEvidenceResponseBuild',
         :'build_state' => :'DatasetBuildState',
         :'restriction' => :'Hash<String, Object>'
       }