pharmaobservatory 0.1.2 → 0.1.3

data/lib/pharmaobservatory/models/biomarkers_sample_screening200_response_rows_inner.rb

@@ -1,484 +0,0 @@
-=begin
-#Pharma Observatory Public REST API
-
-#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
-
-The version of the OpenAPI document: 1.0.0
-
-Generated by: https://openapi-generator.tech
-Generator version: 7.13.0
-
-=end
-
-require 'date'
-require 'time'
-
-module PharmaObservatory
-  class BiomarkersSampleScreening200ResponseRowsInner
-    attr_accessor :amino_acid_change
-
-    attr_accessor :gdc_project_id
-
-    attr_accessor :source_disease_types
-
-    attr_accessor :source_primary_sites
-
-    attr_accessor :affected_case_count
-
-    attr_accessor :ssm_profiled_case_count
-
-    attr_accessor :observed_frequency
-
-    attr_accessor :frequency_ci95_low
-
-    attr_accessor :frequency_ci95_high
-
-    attr_accessor :gdc_data_release
-
-    attr_accessor :reference_screens
-
-    # Attribute mapping from ruby-style variable name to JSON key.
-    def self.attribute_map
-      {
-        :'amino_acid_change' => :'amino_acid_change',
-        :'gdc_project_id' => :'gdc_project_id',
-        :'source_disease_types' => :'source_disease_types',
-        :'source_primary_sites' => :'source_primary_sites',
-        :'affected_case_count' => :'affected_case_count',
-        :'ssm_profiled_case_count' => :'ssm_profiled_case_count',
-        :'observed_frequency' => :'observed_frequency',
-        :'frequency_ci95_low' => :'frequency_ci95_low',
-        :'frequency_ci95_high' => :'frequency_ci95_high',
-        :'gdc_data_release' => :'gdc_data_release',
-        :'reference_screens' => :'reference_screens'
-      }
-    end
-
-    # Returns attribute mapping this model knows about
-    def self.acceptable_attribute_map
-      attribute_map
-    end
-
-    # Returns all the JSON keys this model knows about
-    def self.acceptable_attributes
-      acceptable_attribute_map.values
-    end
-
-    # Attribute type mapping.
-    def self.openapi_types
-      {
-        :'amino_acid_change' => :'String',
-        :'gdc_project_id' => :'String',
-        :'source_disease_types' => :'Array<String>',
-        :'source_primary_sites' => :'Array<String>',
-        :'affected_case_count' => :'Integer',
-        :'ssm_profiled_case_count' => :'Integer',
-        :'observed_frequency' => :'Float',
-        :'frequency_ci95_low' => :'Float',
-        :'frequency_ci95_high' => :'Float',
-        :'gdc_data_release' => :'String',
-        :'reference_screens' => :'BiomarkersSampleScreening200ResponseRowsInnerReferenceScreens'
-      }
-    end
-
-    # List of attributes with nullable: true
-    def self.openapi_nullable
-      Set.new([
-      ])
-    end
-
-    # Initializes the object
-    # @param [Hash] attributes Model attributes in the form of hash
-    def initialize(attributes = {})
-      if (!attributes.is_a?(Hash))
-        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkersSampleScreening200ResponseRowsInner` initialize method"
-      end
-
-      # check to see if the attribute exists and convert string to symbol for hash key
-      acceptable_attribute_map = self.class.acceptable_attribute_map
-      attributes = attributes.each_with_object({}) { |(k, v), h|
-        if (!acceptable_attribute_map.key?(k.to_sym))
-          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkersSampleScreening200ResponseRowsInner`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
-        end
-        h[k.to_sym] = v
-      }
-
-      if attributes.key?(:'amino_acid_change')
-        self.amino_acid_change = attributes[:'amino_acid_change']
-      else
-        self.amino_acid_change = nil
-      end
-
-      if attributes.key?(:'gdc_project_id')
-        self.gdc_project_id = attributes[:'gdc_project_id']
-      else
-        self.gdc_project_id = nil
-      end
-
-      if attributes.key?(:'source_disease_types')
-        if (value = attributes[:'source_disease_types']).is_a?(Array)
-          self.source_disease_types = value
-        end
-      else
-        self.source_disease_types = nil
-      end
-
-      if attributes.key?(:'source_primary_sites')
-        if (value = attributes[:'source_primary_sites']).is_a?(Array)
-          self.source_primary_sites = value
-        end
-      else
-        self.source_primary_sites = nil
-      end
-
-      if attributes.key?(:'affected_case_count')
-        self.affected_case_count = attributes[:'affected_case_count']
-      else
-        self.affected_case_count = nil
-      end
-
-      if attributes.key?(:'ssm_profiled_case_count')
-        self.ssm_profiled_case_count = attributes[:'ssm_profiled_case_count']
-      else
-        self.ssm_profiled_case_count = nil
-      end
-
-      if attributes.key?(:'observed_frequency')
-        self.observed_frequency = attributes[:'observed_frequency']
-      else
-        self.observed_frequency = nil
-      end
-
-      if attributes.key?(:'frequency_ci95_low')
-        self.frequency_ci95_low = attributes[:'frequency_ci95_low']
-      else
-        self.frequency_ci95_low = nil
-      end
-
-      if attributes.key?(:'frequency_ci95_high')
-        self.frequency_ci95_high = attributes[:'frequency_ci95_high']
-      else
-        self.frequency_ci95_high = nil
-      end
-
-      if attributes.key?(:'gdc_data_release')
-        self.gdc_data_release = attributes[:'gdc_data_release']
-      else
-        self.gdc_data_release = nil
-      end
-
-      if attributes.key?(:'reference_screens')
-        self.reference_screens = attributes[:'reference_screens']
-      end
-    end
-
-    # Show invalid properties with the reasons. Usually used together with valid?
-    # @return Array for valid properties with the reasons
-    def list_invalid_properties
-      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
-      invalid_properties = Array.new
-      if @amino_acid_change.nil?
-        invalid_properties.push('invalid value for "amino_acid_change", amino_acid_change cannot be nil.')
-      end
-
-      if @gdc_project_id.nil?
-        invalid_properties.push('invalid value for "gdc_project_id", gdc_project_id cannot be nil.')
-      end
-
-      if @source_disease_types.nil?
-        invalid_properties.push('invalid value for "source_disease_types", source_disease_types cannot be nil.')
-      end
-
-      if @source_primary_sites.nil?
-        invalid_properties.push('invalid value for "source_primary_sites", source_primary_sites cannot be nil.')
-      end
-
-      if @affected_case_count.nil?
-        invalid_properties.push('invalid value for "affected_case_count", affected_case_count cannot be nil.')
-      end
-
-      if @ssm_profiled_case_count.nil?
-        invalid_properties.push('invalid value for "ssm_profiled_case_count", ssm_profiled_case_count cannot be nil.')
-      end
-
-      if @observed_frequency.nil?
-        invalid_properties.push('invalid value for "observed_frequency", observed_frequency cannot be nil.')
-      end
-
-      if @frequency_ci95_low.nil?
-        invalid_properties.push('invalid value for "frequency_ci95_low", frequency_ci95_low cannot be nil.')
-      end
-
-      if @frequency_ci95_high.nil?
-        invalid_properties.push('invalid value for "frequency_ci95_high", frequency_ci95_high cannot be nil.')
-      end
-
-      if @gdc_data_release.nil?
-        invalid_properties.push('invalid value for "gdc_data_release", gdc_data_release cannot be nil.')
-      end
-
-      invalid_properties
-    end
-
-    # Check to see if the all the properties in the model are valid
-    # @return true if the model is valid
-    def valid?
-      warn '[DEPRECATED] the `valid?` method is obsolete'
-      return false if @amino_acid_change.nil?
-      return false if @gdc_project_id.nil?
-      return false if @source_disease_types.nil?
-      return false if @source_primary_sites.nil?
-      return false if @affected_case_count.nil?
-      return false if @ssm_profiled_case_count.nil?
-      return false if @observed_frequency.nil?
-      return false if @frequency_ci95_low.nil?
-      return false if @frequency_ci95_high.nil?
-      return false if @gdc_data_release.nil?
-      true
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] amino_acid_change Value to be assigned
-    def amino_acid_change=(amino_acid_change)
-      if amino_acid_change.nil?
-        fail ArgumentError, 'amino_acid_change cannot be nil'
-      end
-
-      @amino_acid_change = amino_acid_change
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] gdc_project_id Value to be assigned
-    def gdc_project_id=(gdc_project_id)
-      if gdc_project_id.nil?
-        fail ArgumentError, 'gdc_project_id cannot be nil'
-      end
-
-      @gdc_project_id = gdc_project_id
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] source_disease_types Value to be assigned
-    def source_disease_types=(source_disease_types)
-      if source_disease_types.nil?
-        fail ArgumentError, 'source_disease_types cannot be nil'
-      end
-
-      @source_disease_types = source_disease_types
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] source_primary_sites Value to be assigned
-    def source_primary_sites=(source_primary_sites)
-      if source_primary_sites.nil?
-        fail ArgumentError, 'source_primary_sites cannot be nil'
-      end
-
-      @source_primary_sites = source_primary_sites
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] affected_case_count Value to be assigned
-    def affected_case_count=(affected_case_count)
-      if affected_case_count.nil?
-        fail ArgumentError, 'affected_case_count cannot be nil'
-      end
-
-      @affected_case_count = affected_case_count
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] ssm_profiled_case_count Value to be assigned
-    def ssm_profiled_case_count=(ssm_profiled_case_count)
-      if ssm_profiled_case_count.nil?
-        fail ArgumentError, 'ssm_profiled_case_count cannot be nil'
-      end
-
-      @ssm_profiled_case_count = ssm_profiled_case_count
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] observed_frequency Value to be assigned
-    def observed_frequency=(observed_frequency)
-      if observed_frequency.nil?
-        fail ArgumentError, 'observed_frequency cannot be nil'
-      end
-
-      @observed_frequency = observed_frequency
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] frequency_ci95_low Value to be assigned
-    def frequency_ci95_low=(frequency_ci95_low)
-      if frequency_ci95_low.nil?
-        fail ArgumentError, 'frequency_ci95_low cannot be nil'
-      end
-
-      @frequency_ci95_low = frequency_ci95_low
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] frequency_ci95_high Value to be assigned
-    def frequency_ci95_high=(frequency_ci95_high)
-      if frequency_ci95_high.nil?
-        fail ArgumentError, 'frequency_ci95_high cannot be nil'
-      end
-
-      @frequency_ci95_high = frequency_ci95_high
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] gdc_data_release Value to be assigned
-    def gdc_data_release=(gdc_data_release)
-      if gdc_data_release.nil?
-        fail ArgumentError, 'gdc_data_release cannot be nil'
-      end
-
-      @gdc_data_release = gdc_data_release
-    end
-
-    # Checks equality by comparing each attribute.
-    # @param [Object] Object to be compared
-    def ==(o)
-      return true if self.equal?(o)
-      self.class == o.class &&
-          amino_acid_change == o.amino_acid_change &&
-          gdc_project_id == o.gdc_project_id &&
-          source_disease_types == o.source_disease_types &&
-          source_primary_sites == o.source_primary_sites &&
-          affected_case_count == o.affected_case_count &&
-          ssm_profiled_case_count == o.ssm_profiled_case_count &&
-          observed_frequency == o.observed_frequency &&
-          frequency_ci95_low == o.frequency_ci95_low &&
-          frequency_ci95_high == o.frequency_ci95_high &&
-          gdc_data_release == o.gdc_data_release &&
-          reference_screens == o.reference_screens
-    end
-
-    # @see the `==` method
-    # @param [Object] Object to be compared
-    def eql?(o)
-      self == o
-    end
-
-    # Calculates hash code according to all attributes.
-    # @return [Integer] Hash code
-    def hash
-      [amino_acid_change, gdc_project_id, source_disease_types, source_primary_sites, affected_case_count, ssm_profiled_case_count, observed_frequency, frequency_ci95_low, frequency_ci95_high, gdc_data_release, reference_screens].hash
-    end
-
-    # Builds the object from hash
-    # @param [Hash] attributes Model attributes in the form of hash
-    # @return [Object] Returns the model itself
-    def self.build_from_hash(attributes)
-      return nil unless attributes.is_a?(Hash)
-      attributes = attributes.transform_keys(&:to_sym)
-      transformed_hash = {}
-      openapi_types.each_pair do |key, type|
-        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
-          transformed_hash["#{key}"] = nil
-        elsif type =~ /\AArray<(.*)>/i
-          # check to ensure the input is an array given that the attribute
-          # is documented as an array but the input is not
-          if attributes[attribute_map[key]].is_a?(Array)
-            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
-          end
-        elsif !attributes[attribute_map[key]].nil?
-          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
-        end
-      end
-      new(transformed_hash)
-    end
-
-    # Deserializes the data based on type
-    # @param string type Data type
-    # @param string value Value to be deserialized
-    # @return [Object] Deserialized data
-    def self._deserialize(type, value)
-      case type.to_sym
-      when :Time
-        Time.parse(value)
-      when :Date
-        Date.parse(value)
-      when :String
-        value.to_s
-      when :Integer
-        value.to_i
-      when :Float
-        value.to_f
-      when :Boolean
-        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
-          true
-        else
-          false
-        end
-      when :Object
-        # generic object (usually a Hash), return directly
-        value
-      when /\AArray<(?<inner_type>.+)>\z/
-        inner_type = Regexp.last_match[:inner_type]
-        value.map { |v| _deserialize(inner_type, v) }
-      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
-        k_type = Regexp.last_match[:k_type]
-        v_type = Regexp.last_match[:v_type]
-        {}.tap do |hash|
-          value.each do |k, v|
-            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
-          end
-        end
-      else # model
-        # models (e.g. Pet) or oneOf
-        klass = PharmaObservatory.const_get(type)
-        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
-      end
-    end
-
-    # Returns the string representation of the object
-    # @return [String] String presentation of the object
-    def to_s
-      to_hash.to_s
-    end
-
-    # to_body is an alias to to_hash (backward compatibility)
-    # @return [Hash] Returns the object in the form of hash
-    def to_body
-      to_hash
-    end
-
-    # Returns the object in the form of hash
-    # @return [Hash] Returns the object in the form of hash
-    def to_hash
-      hash = {}
-      self.class.attribute_map.each_pair do |attr, param|
-        value = self.send(attr)
-        if value.nil?
-          is_nullable = self.class.openapi_nullable.include?(attr)
-          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
-        end
-
-        hash[param] = _to_hash(value)
-      end
-      hash
-    end
-
-    # Outputs non-array value in the form of hash
-    # For object, use to_hash. Otherwise, just return the value
-    # @param [Object] value Any valid value
-    # @return [Hash] Returns the value in the form of hash
-    def _to_hash(value)
-      if value.is_a?(Array)
-        value.compact.map { |v| _to_hash(v) }
-      elsif value.is_a?(Hash)
-        {}.tap do |hash|
-          value.each { |k, v| hash[k] = _to_hash(v) }
-        end
-      elsif value.respond_to? :to_hash
-        value.to_hash
-      else
-        value
-      end
-    end
-
-  end
-
-end