pets 0.2.5 → 0.2.7

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data/README.md

@@ -1,5 +1,7 @@
 # PETS
 
+DEPRECATED PROJECT. MIGRATED TO [python PETS](https://github.com/seoanezonjic/pets)
+
 PETS (Patient Exploration Tools Suite) include three different tools for the analysis of cohorts of patients with pathological phenotypes described in terms of the Human Phenotype Ontology (HPO) and the position their genomic variants clinically determined.
 
 It can (1) determine the quality of information within a patient cohort with Cohort Analyzer (coPatReporter.rb); (2) associate genomic regions with their pathological phenotypes based on the cohort data with Reg2Phen (reg2phen.rb), and (3) predict the possible genetic variants that cause the clinically observed pathological phenotypes using phenotype-genotype association values with Phen2Reg (phen2reg.rb). 

data/lib/pets/version.rb

@@ -1,3 +1,3 @@
 module Pets
-  VERSION = "0.2.5"
+  VERSION = "0.2.7"
 end

data/pets.gemspec

@@ -10,7 +10,7 @@ Gem::Specification.new do |spec|
   spec.email         = ["elenarojano@uma.es, seoanezonjic@uma.es"]
 
   spec.summary       = %q{Suite with predictive tools.}
-  spec.description   = %q{PETS suite includes three different tools. CohortAnalyzer performs the calculation of several statistics that gives an overview of a cohort of patients to analyse. Reg2Phen uses associations between pathological phenotypes and regions of the genome (these associations can be calculated from the cohort of patients if they include genotypic & phenotypic information using NetAnalyzer, another Ruby gem) to find, for a given genomic region, which pathological phenotypes have been associated with that region. The third tool, Phen2Reg, is a predictor that using the same associations as Reg2Phen, predicts which genomic regions can be the cause of a list of pathological phenotypes observed in a patient.}
+  spec.description   = %q{DEPRECATED PROJECT. MIGRATED TO PYTHON: https://github.com/seoanezonjic/pets. PETS suite includes three different tools. CohortAnalyzer performs the calculation of several statistics that gives an overview of a cohort of patients to analyse. Reg2Phen uses associations between pathological phenotypes and regions of the genome (these associations can be calculated from the cohort of patients if they include genotypic & phenotypic information using NetAnalyzer, another Ruby gem) to find, for a given genomic region, which pathological phenotypes have been associated with that region. The third tool, Phen2Reg, is a predictor that using the same associations as Reg2Phen, predicts which genomic regions can be the cause of a list of pathological phenotypes observed in a patient.}
   spec.homepage      = "https://bitbucket.org/elenarojano/reg2phen/src/master/bin/reg2phen.rb"
   spec.license       = "MIT"
 

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: pets
 version: !ruby/object:Gem::Version
-  version: 0.2.5
+  version: 0.2.7
 platform: ruby
 authors:
 - Elena Rojano, Pedro Seoane
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2023-08-04 00:00:00.000000000 Z
+date: 2025-09-02 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -220,15 +220,16 @@ dependencies:
     - - ">="
       - !ruby/object:Gem::Version
         version: '0'
-description: PETS suite includes three different tools. CohortAnalyzer performs the
-  calculation of several statistics that gives an overview of a cohort of patients
-  to analyse. Reg2Phen uses associations between pathological phenotypes and regions
-  of the genome (these associations can be calculated from the cohort of patients
-  if they include genotypic & phenotypic information using NetAnalyzer, another Ruby
-  gem) to find, for a given genomic region, which pathological phenotypes have been
-  associated with that region. The third tool, Phen2Reg, is a predictor that using
-  the same associations as Reg2Phen, predicts which genomic regions can be the cause
-  of a list of pathological phenotypes observed in a patient.
+description: 'DEPRECATED PROJECT. MIGRATED TO PYTHON: https://github.com/seoanezonjic/pets.
+  PETS suite includes three different tools. CohortAnalyzer performs the calculation
+  of several statistics that gives an overview of a cohort of patients to analyse.
+  Reg2Phen uses associations between pathological phenotypes and regions of the genome
+  (these associations can be calculated from the cohort of patients if they include
+  genotypic & phenotypic information using NetAnalyzer, another Ruby gem) to find,
+  for a given genomic region, which pathological phenotypes have been associated with
+  that region. The third tool, Phen2Reg, is a predictor that using the same associations
+  as Reg2Phen, predicts which genomic regions can be the cause of a list of pathological
+  phenotypes observed in a patient.'
 email:
 - elenarojano@uma.es, seoanezonjic@uma.es
 executables: