pest 0.0.0 → 0.1.0

data/spec/pest/function/probability_spec.rb

@@ -7,11 +7,19 @@ end
 
 describe Pest::Function::Probability do
   before(:each) do
-    @v1 = Pest::Variable.new(:name => :foo)
-    @v2 = Pest::Variable.new(:name => :bar)
-    @v3 = Pest::Variable.new(:name => :baz)
     @instance = ProbabilityTestClass.new
-    @instance.stub(:variables).and_return({:foo => @v1, :bar => @v2})
+    @instance.stub(:data).and_return(Pest::DataSet::Hash.from_hash(:foo => [1], :bar => [1]))
+    @instance.stub(:variables).and_return([:foo,:bar].to_set)
+  end
+
+  describe "#batch_probability" do
+    it "returns a Builder" do
+      @instance.batch_probability.should be_a(Pest::Function::Probability::BatchBuilder)
+    end
+
+    it "is aliased as batch_p" do
+      @instance.batch_p.should be_a(Pest::Function::Probability::BatchBuilder)
+    end
   end
 
   describe "#probability" do
@@ -24,35 +32,35 @@ describe Pest::Function::Probability do
     end
   end
 
-  describe Pest::Function::Probability::Builder do
+  describe Pest::Function::Probability::BatchBuilder do
     describe "::new" do
-      before(:each) { @builder = ProbabilityTestClass::Builder.new(@instance, [@v1, :bar]) }
+      before(:each) { @builder = ProbabilityTestClass::BatchBuilder.new(@instance, [:foo, :bar]) }
 
       it "sets estimator" do
         @builder.estimator.should == @instance
       end
 
       it "sets event" do
-        @builder.event.should == [@v1, @v2].to_set
+        @builder.event.should == [:foo, :bar].to_set
       end
 
       it "fails if variable undefined for estimator" do
-        lambda { ProbabilityTestClass::Builder.new(@instance, [@v1, @v3]) }.should raise_error(ArgumentError)
+        lambda { ProbabilityTestClass::BatchBuilder.new(@instance, [:foo, :baz]) }.should raise_error(ArgumentError)
       end
 
       it "constructs dataset if passed hash"
     end
 
     describe "#given" do
-      before(:each) { @builder = ProbabilityTestClass::Builder.new(@instance, [:foo]) }
+      before(:each) { @builder = ProbabilityTestClass::BatchBuilder.new(@instance, [:foo]) }
 
       it "sets givens" do
         @builder.given(:bar)
-        @builder.givens.should include(@v2)
+        @builder.givens.should include(:bar)
       end
 
       it "returns self" do
-        @builder.given(:bar).should be_a(ProbabilityTestClass::Builder)
+        @builder.given(:bar).should be_a(ProbabilityTestClass::BatchBuilder)
       end
 
       it "fails if variables aren't variables on the estimator" do
@@ -67,7 +75,7 @@ describe Pest::Function::Probability do
     describe "#in" do
       it "sets data source" do
         data_set = double('DataSet')
-        ProbabilityTestClass::Builder.new(@instance,[:foo]).in(data_set).data_source.should == data_set
+        ProbabilityTestClass::BatchBuilder.new(@instance,[:foo]).in(data_set).data_source.should == data_set
       end
 
       it "raises error if existing data source"
@@ -78,40 +86,101 @@ describe Pest::Function::Probability do
 
       it "gets probability of event" do
         event = double('EventDist')
-        @instance.distributions.stub(:[]).with([@v1].to_set).and_return(event)
-        event.should_receive(:probability).and_return 0.5
+        @instance.distributions.stub(:[]).with(:foo).and_return(event)
+        event.should_receive(:probability).and_return NArray[0.5]
 
-        ProbabilityTestClass::Builder.new(@instance,[:foo]).evaluate
+        ProbabilityTestClass::BatchBuilder.new(@instance,[:foo]).evaluate
       end
 
       it "gets probability of givens" do
         event = double('EventDist')
         given = double('GivenDist')
-        @instance.distributions.stub(:[]).with([@v1].to_set).and_return(event)
-        @instance.distributions.stub(:[]).with([@v2].to_set).and_return(given)
-        event.stub(:probability).and_return 0.5
-        given.should_receive(:probability).and_return 0.5
+        @instance.distributions.stub(:[]).with(:foo, :bar).and_return(event)
+        @instance.distributions.stub(:[]).with(:bar).and_return(given)
+        event.stub(:probability).and_return NArray[0.5]
+        given.should_receive(:probability).and_return NArray[0.5]
 
-        ProbabilityTestClass::Builder.new(@instance,[:foo]).given(:bar).evaluate
+        ProbabilityTestClass::BatchBuilder.new(@instance,[:foo]).given(:bar).evaluate
       end
 
       it "returns Pr event / givens (if givens)" do
         event = double('EventDist')
         given = double('GivenDist')
-        @instance.distributions.stub(:[]).with([@v1].to_set).and_return(event)
-        @instance.distributions.stub(:[]).with([@v2].to_set).and_return(given)
-        event.stub(:probability).and_return 0.5
-        given.stub(:probability).and_return 0.5
+        @instance.distributions.stub(:[]).with(:foo, :bar).and_return(event)
+        @instance.distributions.stub(:[]).with(:bar).and_return(given)
+        event.stub(:probability).and_return NArray[0.5]
+        given.stub(:probability).and_return NArray[0.5]
 
-        ProbabilityTestClass::Builder.new(@instance,[:foo]).given(:bar).evaluate.should == 1.0
+        ProbabilityTestClass::BatchBuilder.new(@instance,[:foo]).given(:bar).evaluate.should == [1.0]
       end
 
       it "returns Pr event (if no givens)" do
         event = double('EventDist')
-        @instance.distributions.stub(:[]).with([@v1].to_set).and_return(event)
-        event.stub(:probability).and_return 0.5
+        @instance.distributions.stub(:[]).with(:foo).and_return(event)
+        event.stub(:probability).and_return NArray[0.5]
+
+        ProbabilityTestClass::BatchBuilder.new(@instance,[:foo]).evaluate.should == [0.5]
+      end
+    end
+  end
+
+  describe Pest::Function::Probability::Builder do
+    describe "::new" do
+      before(:each) { @builder = ProbabilityTestClass::Builder.new(@instance, [:foo, :bar]) }
+
+      it "sets estimator" do
+        @builder.estimator.should == @instance
+      end
+
+      it "sets event" do
+        pending "do you need this?"
+        @builder.event.should == [:foo, :bar].to_set
+      end
+
+      it "fails if variable undefined for estimator" do
+        pending "do you need this?"
+        lambda { ProbabilityTestClass::Builder.new(@instance, [:foo, :baz]) }.should raise_error(ArgumentError)
+      end
+    end
 
-        ProbabilityTestClass::Builder.new(@instance,[:foo]).evaluate.should == 0.5
+    describe "#given" do
+      before(:each) { @builder = ProbabilityTestClass::Builder.new(@instance, {:foo => 1}) }
+
+      it "sets givens" do
+        @builder.given(:bar => 2)
+        @builder.givens.should == {:bar => 2}
+      end
+
+      it "returns self" do
+        @builder.given(:bar => 2).should be_a(ProbabilityTestClass::Builder)
+      end
+
+      it "fails if variables aren't variables on the estimator" do
+        lambda { @builder.given(:baz => 3) }.should raise_error(ArgumentError)
+      end
+
+      it "adds to dataset if passed hash" do
+        @builder.given(:foo => 2)
+        @builder.given(:foo => 3, :bar => 4)
+        @builder.givens.should == {:foo => 3, :bar => 4}
+      end
+    end
+
+    describe "#evaluate" do
+      it "gets probability of event" do
+        pending "is this really worth testing?"
+      end
+
+      it "gets probability of givens" do
+        pending "is this really worth testing?"
+      end
+
+      it "returns Pr event / givens (if givens)" do
+        pending "is this really worth testing?"
+      end
+
+      it "returns Pr event (if no givens)" do
+        pending "is this really worth testing?"
       end
     end
   end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: pest
 version: !ruby/object:Gem::Version
-  version: 0.0.0
+  version: 0.1.0
   prerelease: 
 platform: ruby
 authors:
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-06-24 00:00:00.000000000 Z
+date: 2012-07-05 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: pest
@@ -251,6 +251,70 @@ dependencies:
     - - ! '>='
       - !ruby/object:Gem::Version
         version: '0'
+- !ruby/object:Gem::Dependency
+  name: jeweler
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: pry
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
 description: Wrappers to facilitate different classes of probability estimators
 email: kerinin@gmail.com
 executables: []
@@ -272,7 +336,6 @@ files:
 - lib/pest/function.rb
 - lib/pest/function/entropy.rb
 - lib/pest/function/probability.rb
-- lib/pest/variable.rb
 - lib/pest/version.rb
 - pest.gemspec
 - spec/pest/data_set/hash_spec.rb
@@ -287,7 +350,6 @@ files:
 - spec/pest/estimator_spec.rb
 - spec/pest/function/entropy_spec.rb
 - spec/pest/function/probability_spec.rb
-- spec/pest/variable_spec.rb
 - spec/pest_spec.rb
 - spec/spec_helper.rb
 homepage: http://github.com/kerinin/pest
@@ -305,7 +367,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: 1228436893259632292
+      hash: 851348259220789054
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements:
@@ -314,7 +376,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 1.8.24
+rubygems_version: 1.8.23
 signing_key: 
 specification_version: 3
 summary: Probability Estimation

data/lib/pest/variable.rb

@@ -1,34 +0,0 @@
-class Pest::Variable
-  def self.deserialize(string)
-    if string.chomp =~ /^([^\:]+)\:(\w{8}-\w{4}-\w{4}-\w{4}-\w{12})$/
-      new :name => $1, :uuid => $2
-    else
-      raise "Unable to parse string"
-    end
-  end
-
-  attr_reader :name, :uuid
-
-  def initialize(args={})
-    @name = args[:name]
-    @uuid = args[:uuid] || UUIDTools::UUID.random_create
-  end
-
-  def identifier
-    "#{name}:#{uuid}"
-  end
-  alias :serialize :identifier
-
-  def hash
-    identifier.hash
-  end
-
-  def ==(other)
-    other.kind_of?(self.class) and identifier == other.identifier
-  end
-  alias :eql? :==
-
-  def <=>(other)
-    identifier <=> other.identifier
-  end
-end

data/spec/pest/variable_spec.rb

@@ -1,73 +0,0 @@
-require 'spec_helper'
-
-describe Pest::Variable do
-  before(:each) { @class = Pest::Variable }
-
-  describe "#uuid" do
-    it "is generated if not specified" do
-      @class.new.uuid.should be_true
-    end
-
-    it "uses uuid passed at instantiation" do
-      @class.new(:uuid => 'foo').uuid.should == 'foo'
-    end
-  end
-
-  describe "#name" do
-    it "has it" do
-      @class.new(:name => 'foo').name.should == 'foo'
-    end
-  end
-
-  describe "#identifier" do
-    before(:each) do
-      @instance = @class.new(:name => 'foo', :uuid => 'bar')
-    end
-
-    it "concatenates name:uuid" do
-      @instance.identifier.should == 'foo:bar'
-    end
-
-    it "is aliased as serialize" do
-      @instance.serialize.should == 'foo:bar'
-    end
-  end
-
-  describe "#==" do
-    before(:each) do
-      @one = @class.new(:name => 'foo', :uuid => 'bar')
-      @two = @class.new(:name => 'foo', :uuid => 'bar')
-      @three = @class.new(:name => 'foo', :uuid => 'baz')
-    end
-
-    it "returns true if same identifier" do
-      @one.should == @two
-    end
-
-    it "returns false if identifier doesn't match" do
-      @one.should_not == @three
-    end
-
-    it "returns false if not a Variable instance" do
-      @one.should_not == 'hello'
-    end
-
-    it "works for sets" do
-      [@one].to_set.should == [@two].to_set
-    end
-  end
-
-  describe "::deserialize" do
-    before(:each) do
-      @instance = @class.deserialize('foo:4f9b5243-2e2e-4a90-8009-21079fad5855')
-    end
-
-    it "instantiates with name" do
-      @instance.name.should == 'foo'
-    end
-
-    it "instantiates with uuid" do
-      @instance.uuid.should == '4f9b5243-2e2e-4a90-8009-21079fad5855'
-    end
-  end
-end