pbs_job 1.0.0 → 2.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/pbs_job/version.rb +1 -1
- data/lib/pbs_job.rb +1 -1
- data/pbs_job.gemspec +1 -0
- data/spec/pbs_job_spec.rb +4 -41
- data/spec/support/spec_helper.rb +4 -0
- metadata +16 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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-
data.tar.gz:
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3
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metadata.gz: 6ed1405413dcb6bb0ed1006c861e957bc3c4f3be
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data.tar.gz: f5b2e5f28fc48ca58243be8bd0a4b58052b921c2
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 57a6b467cb73f2e1fdfc8a3a33e5d92e93691c402dd71198b71ce6b6d46e28e4b82f2085eb9e5a5c2fcb4b2152b03da96bdc0303104538c3739da9cd3a4bdb81
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7
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data.tar.gz: a7a1e516d2ebd16c5a78cbf4450964c5dfdccc31ef22cc1742381fda6791a6465da501ae657722c3858fc95218648ef33df641a540ec6af1ef6f5a5206d85d47
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data/lib/pbs_job/version.rb
CHANGED
data/lib/pbs_job.rb
CHANGED
@@ -127,7 +127,7 @@ module PbsJob
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# @returns [String] Name with date appended
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def full_name
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-
@full_name ||= "#{name}.#{
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+
@full_name ||= "#{name}.#{DateTime.now.strftime('%b%d_%Y.%Hh-%Mm-%Ss')}"
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end
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def abs_job_root
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data/pbs_job.gemspec
CHANGED
data/spec/pbs_job_spec.rb
CHANGED
@@ -6,32 +6,14 @@ require_relative '../lib/pbs_job'
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NAME = 'test_job'
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EMAIL_ADDRESS = 'email@address'
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JOB_ROOT = "#{NAME}.#{Date.today.strftime('%b%d_%Y')}"
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QSUB_SCRIPT = "#{JOB_ROOT}/job.qsub"
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PBS_SCRIPT = "#{JOB_ROOT}/job.pbs"
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TASK = "#{JOB_ROOT}/task"
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RESULTS = "#{JOB_ROOT}/results"
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STREAMS = "#{JOB_ROOT}/streams"
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describe 'pbs_job' do
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-
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HELP = <<-HELP
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Commands:
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pbs_job help [COMMAND] # Describe available commands or ...
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pbs_job new NAME EMAIL_ADDRESS [OPTIONS] # Creates a new PBS job with the ...
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HELP
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SUCCESSFUL_OUTPUT = <<-OUT
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\e[1m\e[32m create\e[0m #{JOB_ROOT}
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\e[1m\e[32m create\e[0m #{QSUB_SCRIPT}
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\e[1m\e[32m chmod\e[0m #{QSUB_SCRIPT}
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\e[1m\e[32m create\e[0m #{PBS_SCRIPT}
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\e[1m\e[32m chmod\e[0m #{PBS_SCRIPT}
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\e[1m\e[32m create\e[0m #{TASK}
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\e[1m\e[32m chmod\e[0m #{TASK}
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\e[1m\e[32m create\e[0m #{STREAMS}
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\e[1m\e[32m create\e[0m #{RESULTS}
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-
OUT
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it 'prints usage and options without arguments' do
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pbs_job
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@@ -70,13 +52,7 @@ GEN_HELP
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in_tmp_dir do
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pbs_job "new #{NAME} #{EMAIL_ADDRESS}"
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stdout.
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File.directory?(JOB_ROOT).must_equal true
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check_script QSUB_SCRIPT
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check_script PBS_SCRIPT
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check_script TASK
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File.directory?(RESULTS).must_equal true
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File.directory?(STREAMS).must_equal true
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stdout.wont_be_empty
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end
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end
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end
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@@ -85,13 +61,7 @@ GEN_HELP
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in_tmp_dir do
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pbs_job "new #{NAME} #{EMAIL_ADDRESS} --script=bash"
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stdout.
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File.directory?(JOB_ROOT).must_equal true
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check_script QSUB_SCRIPT
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check_script PBS_SCRIPT
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check_script TASK
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File.directory?(RESULTS).must_equal true
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File.directory?(STREAMS).must_equal true
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stdout.wont_be_empty
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end
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end
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end
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@@ -101,14 +71,7 @@ GEN_HELP
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in_tmp_dir do
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pbs_job "new #{NAME} #{EMAIL_ADDRESS} --link-results=#{linked_results}"
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stdout.
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File.directory?(JOB_ROOT).must_equal true
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check_script QSUB_SCRIPT
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check_script PBS_SCRIPT
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check_script TASK
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File.symlink?(RESULTS).must_equal true
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File.readlink(RESULTS).must_equal linked_results
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File.directory?(STREAMS).must_equal true
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stdout.wont_be_empty
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end
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end
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end
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@@ -127,7 +90,7 @@ describe PbsJob::PbsJob do
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quietly do
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patient = File.basename(PbsJob::PbsJob.start(args).first)
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end
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patient.must_equal
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patient.split('.').first.must_equal NAME
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end
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end
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end
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data/spec/support/spec_helper.rb
CHANGED
@@ -16,6 +16,10 @@ end
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require 'bahia'
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Bahia.project_directory = File.expand_path('../../../', __FILE__)
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Bahia.command = File.join(Bahia.project_directory, 'bin', 'pbs_job')
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Bahia.command_method = 'pbs_job'
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class MiniTest::Spec
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include Bahia
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end
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metadata
CHANGED
@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: pbs_job
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version: !ruby/object:Gem::Version
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version:
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version: 2.0.0
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platform: ruby
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authors:
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- Dustin Morrill
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autorequire:
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bindir: bin
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cert_chain: []
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date:
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date: 2014-01-01 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: thor
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@@ -108,6 +108,20 @@ dependencies:
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- - ~>
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- !ruby/object:Gem::Version
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version: 0.7.1
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- !ruby/object:Gem::Dependency
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name: timecop
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - '>='
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- !ruby/object:Gem::Version
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - '>='
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- !ruby/object:Gem::Version
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version: '0'
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description: PBS/Torque job generator
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email:
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- morrill@ualberta.ca
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