pbs_job 1.0.0 → 2.0.0
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- checksums.yaml +4 -4
- data/lib/pbs_job/version.rb +1 -1
- data/lib/pbs_job.rb +1 -1
- data/pbs_job.gemspec +1 -0
- data/spec/pbs_job_spec.rb +4 -41
- data/spec/support/spec_helper.rb +4 -0
- metadata +16 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
|
+
metadata.gz: 6ed1405413dcb6bb0ed1006c861e957bc3c4f3be
|
4
|
+
data.tar.gz: f5b2e5f28fc48ca58243be8bd0a4b58052b921c2
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5
5
|
SHA512:
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6
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-
metadata.gz:
|
7
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-
data.tar.gz:
|
6
|
+
metadata.gz: 57a6b467cb73f2e1fdfc8a3a33e5d92e93691c402dd71198b71ce6b6d46e28e4b82f2085eb9e5a5c2fcb4b2152b03da96bdc0303104538c3739da9cd3a4bdb81
|
7
|
+
data.tar.gz: a7a1e516d2ebd16c5a78cbf4450964c5dfdccc31ef22cc1742381fda6791a6465da501ae657722c3858fc95218648ef33df641a540ec6af1ef6f5a5206d85d47
|
data/lib/pbs_job/version.rb
CHANGED
data/lib/pbs_job.rb
CHANGED
@@ -127,7 +127,7 @@ module PbsJob
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127
127
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128
128
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# @returns [String] Name with date appended
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129
129
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def full_name
|
130
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-
@full_name ||= "#{name}.#{
|
130
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+
@full_name ||= "#{name}.#{DateTime.now.strftime('%b%d_%Y.%Hh-%Mm-%Ss')}"
|
131
131
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end
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132
132
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133
133
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def abs_job_root
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data/pbs_job.gemspec
CHANGED
data/spec/pbs_job_spec.rb
CHANGED
@@ -6,32 +6,14 @@ require_relative '../lib/pbs_job'
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6
6
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|
7
7
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NAME = 'test_job'
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8
8
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EMAIL_ADDRESS = 'email@address'
|
9
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-
JOB_ROOT = "#{NAME}.#{Date.today.strftime('%b%d_%Y')}"
|
10
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-
QSUB_SCRIPT = "#{JOB_ROOT}/job.qsub"
|
11
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-
PBS_SCRIPT = "#{JOB_ROOT}/job.pbs"
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12
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-
TASK = "#{JOB_ROOT}/task"
|
13
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-
RESULTS = "#{JOB_ROOT}/results"
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14
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-
STREAMS = "#{JOB_ROOT}/streams"
|
15
9
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|
16
10
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describe 'pbs_job' do
|
17
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-
|
18
11
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HELP = <<-HELP
|
19
12
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Commands:
|
20
13
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pbs_job help [COMMAND] # Describe available commands or ...
|
21
14
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pbs_job new NAME EMAIL_ADDRESS [OPTIONS] # Creates a new PBS job with the ...
|
22
15
|
|
23
16
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HELP
|
24
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-
SUCCESSFUL_OUTPUT = <<-OUT
|
25
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-
\e[1m\e[32m create\e[0m #{JOB_ROOT}
|
26
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-
\e[1m\e[32m create\e[0m #{QSUB_SCRIPT}
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27
|
-
\e[1m\e[32m chmod\e[0m #{QSUB_SCRIPT}
|
28
|
-
\e[1m\e[32m create\e[0m #{PBS_SCRIPT}
|
29
|
-
\e[1m\e[32m chmod\e[0m #{PBS_SCRIPT}
|
30
|
-
\e[1m\e[32m create\e[0m #{TASK}
|
31
|
-
\e[1m\e[32m chmod\e[0m #{TASK}
|
32
|
-
\e[1m\e[32m create\e[0m #{STREAMS}
|
33
|
-
\e[1m\e[32m create\e[0m #{RESULTS}
|
34
|
-
OUT
|
35
17
|
|
36
18
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it 'prints usage and options without arguments' do
|
37
19
|
pbs_job
|
@@ -70,13 +52,7 @@ GEN_HELP
|
|
70
52
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in_tmp_dir do
|
71
53
|
pbs_job "new #{NAME} #{EMAIL_ADDRESS}"
|
72
54
|
|
73
|
-
stdout.
|
74
|
-
File.directory?(JOB_ROOT).must_equal true
|
75
|
-
check_script QSUB_SCRIPT
|
76
|
-
check_script PBS_SCRIPT
|
77
|
-
check_script TASK
|
78
|
-
File.directory?(RESULTS).must_equal true
|
79
|
-
File.directory?(STREAMS).must_equal true
|
55
|
+
stdout.wont_be_empty
|
80
56
|
end
|
81
57
|
end
|
82
58
|
end
|
@@ -85,13 +61,7 @@ GEN_HELP
|
|
85
61
|
in_tmp_dir do
|
86
62
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pbs_job "new #{NAME} #{EMAIL_ADDRESS} --script=bash"
|
87
63
|
|
88
|
-
stdout.
|
89
|
-
File.directory?(JOB_ROOT).must_equal true
|
90
|
-
check_script QSUB_SCRIPT
|
91
|
-
check_script PBS_SCRIPT
|
92
|
-
check_script TASK
|
93
|
-
File.directory?(RESULTS).must_equal true
|
94
|
-
File.directory?(STREAMS).must_equal true
|
64
|
+
stdout.wont_be_empty
|
95
65
|
end
|
96
66
|
end
|
97
67
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end
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@@ -101,14 +71,7 @@ GEN_HELP
|
|
101
71
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in_tmp_dir do
|
102
72
|
pbs_job "new #{NAME} #{EMAIL_ADDRESS} --link-results=#{linked_results}"
|
103
73
|
|
104
|
-
stdout.
|
105
|
-
File.directory?(JOB_ROOT).must_equal true
|
106
|
-
check_script QSUB_SCRIPT
|
107
|
-
check_script PBS_SCRIPT
|
108
|
-
check_script TASK
|
109
|
-
File.symlink?(RESULTS).must_equal true
|
110
|
-
File.readlink(RESULTS).must_equal linked_results
|
111
|
-
File.directory?(STREAMS).must_equal true
|
74
|
+
stdout.wont_be_empty
|
112
75
|
end
|
113
76
|
end
|
114
77
|
end
|
@@ -127,7 +90,7 @@ describe PbsJob::PbsJob do
|
|
127
90
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quietly do
|
128
91
|
patient = File.basename(PbsJob::PbsJob.start(args).first)
|
129
92
|
end
|
130
|
-
patient.must_equal
|
93
|
+
patient.split('.').first.must_equal NAME
|
131
94
|
end
|
132
95
|
end
|
133
96
|
end
|
data/spec/support/spec_helper.rb
CHANGED
@@ -16,6 +16,10 @@ end
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|
16
16
|
|
17
17
|
require 'bahia'
|
18
18
|
|
19
|
+
Bahia.project_directory = File.expand_path('../../../', __FILE__)
|
20
|
+
Bahia.command = File.join(Bahia.project_directory, 'bin', 'pbs_job')
|
21
|
+
Bahia.command_method = 'pbs_job'
|
22
|
+
|
19
23
|
class MiniTest::Spec
|
20
24
|
include Bahia
|
21
25
|
end
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: pbs_job
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version:
|
4
|
+
version: 2.0.0
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Dustin Morrill
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date:
|
11
|
+
date: 2014-01-01 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: thor
|
@@ -108,6 +108,20 @@ dependencies:
|
|
108
108
|
- - ~>
|
109
109
|
- !ruby/object:Gem::Version
|
110
110
|
version: 0.7.1
|
111
|
+
- !ruby/object:Gem::Dependency
|
112
|
+
name: timecop
|
113
|
+
requirement: !ruby/object:Gem::Requirement
|
114
|
+
requirements:
|
115
|
+
- - '>='
|
116
|
+
- !ruby/object:Gem::Version
|
117
|
+
version: '0'
|
118
|
+
type: :development
|
119
|
+
prerelease: false
|
120
|
+
version_requirements: !ruby/object:Gem::Requirement
|
121
|
+
requirements:
|
122
|
+
- - '>='
|
123
|
+
- !ruby/object:Gem::Version
|
124
|
+
version: '0'
|
111
125
|
description: PBS/Torque job generator
|
112
126
|
email:
|
113
127
|
- morrill@ualberta.ca
|