parse_fasta 1.9.0 → 1.9.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +8 -8
- data/README.md +5 -0
- data/lib/parse_fasta/fastq_file.rb +4 -2
- data/lib/parse_fasta/version.rb +1 -1
- metadata +2 -2
checksums.yaml
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metadata.gz: !binary |-
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data/README.md
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@@ -66,6 +66,11 @@ Read fasta file into a hash.
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## Versions ##
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### 1.9.1 ###
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Speed up fastQ `each_record` and `each_record_fast`. Courtesy of
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[Matthew Ralston](https://github.com/MatthewRalston).
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### 1.9.0 ###
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Added "fast" versions of `each_record` methods
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@@ -78,7 +78,7 @@ class FastqFile < File
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f.each_line do |line|
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line.chomp!
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case count
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case count
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when 0
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header = line[1..-1]
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when 1
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when 2
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description = line[1..-1]
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when 3
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count = -1
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quality = Quality.new(line)
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yield(header, sequence, description, quality)
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end
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f.each_line do |line|
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line.chomp!
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case count
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case count
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when 0
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header = line[1..-1]
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when 1
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when 2
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description = line[1..-1]
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when 3
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count = -1
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quality = line
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yield(header, sequence, description, quality)
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end
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data/lib/parse_fasta/version.rb
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metadata
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--- !ruby/object:Gem::Specification
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name: parse_fasta
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version: !ruby/object:Gem::Version
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version: 1.9.
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version: 1.9.1
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platform: ruby
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authors:
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- Ryan Moore
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2016-04-
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date: 2016-04-20 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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