parse_fasta 0.0.2

checksums.yaml

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data/lib/parse_fasta.rb

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+# Copyright 2014 Ryan Moore
+
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+def parse_line(line)
+  line.chomp.split("\n", 2).map { |s| s.gsub(/\n|>/, '') }
+end
+
+class File
+  def each_record
+    self.each("\n>") do |line|
+      header, sequence = parse_line(line)
+      yield header.strip, sequence
+    end
+  end
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: parse_fasta
+version: !ruby/object:Gem::Version
+  version: 0.0.2
+platform: ruby
+authors:
+- Ryan Moore
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2014-05-30 00:00:00.000000000 Z
+dependencies: []
+description: A simple monkey patch of the File class to easily parse fasta files.
+email: moorer@udel.edu
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- lib/parse_fasta.rb
+homepage: https://github.com/mooreryan/parse_fasta
+licenses:
+- http://www.gnu.org/licenses/gpl.txt
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.2.2
+signing_key: 
+specification_version: 4
+summary: Simple API for parsing fasta files
+test_files: []