paper_summary 0.0.1

checksums.yaml

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+!binary "U0hBMQ==":
+  metadata.gz: e29dde93f78030ecd160e079d036fb5ebcd0ade5
+  data.tar.gz: 3a477844e8786573203684e071962c27610151ec
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data/.gitignore

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+*.gem
+*.rbc
+.bundle
+.config
+.yardoc
+Gemfile.lock
+InstalledFiles
+_yardoc
+coverage
+doc/
+lib/bundler/man
+pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp
+*.sublime-project
+*.sublime-workspace
+

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in paper_metadata.gemspec
+gemspec

data/LICENSE.txt

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+Copyright (c) 2013 Jure Triglav
+
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.md

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+# PaperMetadata
+
+PaperMetadata is a gem that gets a publication's metadata by accessing the CrossRef OpenURL API.
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+    gem 'paper_metadata'
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install paper_metadata
+
+## Usage
+
+You can use PaperMetadata like this:
+
+    result = PaperMetadata.metadata_for('doi:10.1021/ac1014832')
+
+The result will be a hash similar to this one:
+
+    { :volume=>"82",
+      :isssue=>"19",
+      :first_page=>"8153",
+      :last_page=>"8160",
+      :title=>
+      "Basic Modeling Approach To Optimize Elemental Imaging by Laser Ablation ICPMS",
+      :authors=>"Jure Triglav, Johannes T. van Elteren, Vid S. Šelih",
+      :journal=>"Anal. Chem. 2010",
+      :resource=>"http://pubs.acs.org/doi/abs/10.1021/ac1014832" }
+
+## Contributing
+
+1. Fork it
+2. Create your feature branch (`git checkout -b my-new-feature`)
+3. Commit your changes (`git commit -am 'Add some feature'`)
+4. Push to the branch (`git push origin my-new-feature`)
+5. Create new Pull Request
+
+Be sure to run the specs too.

data/Rakefile

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+require "bundler/gem_tasks"
+
+require 'rake/testtask'
+
+Rake::TestTask.new do |t|
+  t.libs << 'test'
+end
+
+desc "Run tests"
+task :default => :test

data/lib/paper_summary/version.rb

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+module PaperSummary
+  VERSION = "0.0.1"
+end

data/lib/paper_summary.rb

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+require 'paper_summary/version'
+require 'nokogiri'
+require 'net/http'
+require 'open-uri'
+require 'cgi'
+require 'uri'
+require 'json'
+require 'pry'
+
+module PaperSummary
+  class << self
+
+    def summary_for(identifier)
+      if identifier =~ /^arxiv\:(.*)/i
+        nil # summary_for_arxiv($1.strip)
+      elsif identifier =~ /^doi\:\s*(10\.7554\/.*)/i
+        summary_for_elife($1.strip)
+      elsif identifier =~ /^doi\:(.*)/i
+        nil
+      end
+    end
+
+    def summary_for_elife(doi)
+      fluiddb = JSON.parse(open("http://fluiddb.fluidinfo.com/values?query=elifesciences.org/api_v1/article/doi=%22#{doi}%22&tag=*").read)
+
+      # Get the DOI url
+      doi = fluiddb['results']['id'].values.first['fluiddb/about']['value'].match(/doi\.org\/(.*)/)[1]
+      
+      # Get the eLife url
+      url = URI.parse('http://dx.doi.org')
+      res = Net::HTTP.start(url.host, url.port) {|http|
+        http.get("/#{doi}")
+      }
+      url = URI.parse(res['location'])
+      res = Net::HTTP.start(url.host, url.port) {|http|
+        http.get(url.path)
+      }
+      elife_xml_url = res['location'] + '.source.xml'
+
+      # Get the eLife paper XML
+      xml = Nokogiri::XML(open(elife_xml_url)).css('abstract[abstract-type="executive-summary"] p')
+      summary = {}
+      summary[:summary_html] = xml.to_html
+      summary[:summary_text] = xml.text
+      summary
+    end
+  end
+end

data/paper_summary.gemspec

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+# -*- encoding: utf-8 -*-
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'paper_summary/version'
+
+Gem::Specification.new do |gem|
+  gem.name          = "paper_summary"
+  gem.version       = PaperSummary::VERSION
+  gem.authors       = ["Jure Triglav"]
+  gem.email         = ["juretriglav@gmail.com"]
+  gem.summary   = %q{Paper_summary gem gets the summary for papers with a DOI or an arXiv identifier}
+  gem.description       = %q{Summary getter for scientific papers}
+  gem.homepage      = "http://github.com/jure/paper_summary"
+
+  gem.files         = `git ls-files`.split($/)
+  gem.executables   = gem.files.grep(%r{^bin/}).map{ |f| File.basename(f) }
+  gem.test_files    = gem.files.grep(%r{^(test|spec|features)/})
+  gem.require_paths = ["lib"]
+
+  gem.add_development_dependency "pry"
+  # Tests
+  gem.add_development_dependency "rake"
+  gem.add_development_dependency "webmock"
+  gem.add_runtime_dependency "nokogiri", ["= 1.5.6"]
+end

data/test/dx_doi.raw

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+HTTP/1.1 303 See Other
+Server: Apache-Coyote/1.1
+Vary: Accept
+Location: http://elife.elifesciences.org/lookup/doi/10.7554/eLife.00013
+Expires: Thu, 25 Jul 2013 09:30:47 GMT
+Content-Type: text/html;charset=utf-8
+Content-Length: 208
+Date: Wed, 24 Jul 2013 10:24:44 GMT
+
+
+<HTML><HEAD><TITLE>Handle Redirect</TITLE></HEAD>
+<BODY><A HREF="http://elife.elifesciences.org/lookup/doi/10.7554/eLife.00013">http://elife.elifesciences.org/lookup/doi/10.7554/eLife.00013</A></BODY></HTML>