paper_summary 0.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.gitignore +20 -0
- data/Gemfile +4 -0
- data/LICENSE.txt +22 -0
- data/README.md +45 -0
- data/Rakefile +10 -0
- data/lib/paper_summary/version.rb +3 -0
- data/lib/paper_summary.rb +48 -0
- data/paper_summary.gemspec +25 -0
- data/test/dx_doi.raw +12 -0
- data/test/elife.xml +7 -0
- data/test/elife_lookup.raw +14 -0
- data/test/fluiddb.json +1 -0
- data/test/test_helper.rb +1 -0
- data/test/test_paper_summary.rb +43 -0
- metadata +120 -0
checksums.yaml
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---
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!binary "U0hBMQ==":
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metadata.gz: e29dde93f78030ecd160e079d036fb5ebcd0ade5
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data.tar.gz: 3a477844e8786573203684e071962c27610151ec
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!binary "U0hBNTEy":
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metadata.gz: e124162bb51ccff184cba284df95f34d1269eace18b7dd6c0be7f80b58d973ae042bfd881a52a094066994a40e11a3a5575fa6f554517a17db77a5e5be90b1ef
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data.tar.gz: 6a00be595abe1997016c988d975e68c8fa700d738efc2a11c9244904ba43afb47f72b35c8f8f725be133d5f7b512e9138d488eea6c2b5941ac7c210cb808eabd
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data/.gitignore
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data/Gemfile
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data/LICENSE.txt
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Copyright (c) 2013 Jure Triglav
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MIT License
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Permission is hereby granted, free of charge, to any person obtaining
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a copy of this software and associated documentation files (the
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"Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to
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permit persons to whom the Software is furnished to do so, subject to
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the following conditions:
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The above copyright notice and this permission notice shall be
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included in all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
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LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
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OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
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WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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data/README.md
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# PaperMetadata
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PaperMetadata is a gem that gets a publication's metadata by accessing the CrossRef OpenURL API.
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## Installation
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Add this line to your application's Gemfile:
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gem 'paper_metadata'
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And then execute:
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$ bundle
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Or install it yourself as:
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$ gem install paper_metadata
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## Usage
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You can use PaperMetadata like this:
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result = PaperMetadata.metadata_for('doi:10.1021/ac1014832')
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The result will be a hash similar to this one:
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{ :volume=>"82",
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:isssue=>"19",
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:first_page=>"8153",
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:last_page=>"8160",
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:title=>
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"Basic Modeling Approach To Optimize Elemental Imaging by Laser Ablation ICPMS",
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:authors=>"Jure Triglav, Johannes T. van Elteren, Vid S. Šelih",
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:journal=>"Anal. Chem. 2010",
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:resource=>"http://pubs.acs.org/doi/abs/10.1021/ac1014832" }
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## Contributing
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1. Fork it
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2. Create your feature branch (`git checkout -b my-new-feature`)
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3. Commit your changes (`git commit -am 'Add some feature'`)
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4. Push to the branch (`git push origin my-new-feature`)
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5. Create new Pull Request
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Be sure to run the specs too.
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data/Rakefile
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require 'paper_summary/version'
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require 'nokogiri'
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require 'net/http'
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require 'open-uri'
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require 'cgi'
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require 'uri'
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require 'json'
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require 'pry'
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module PaperSummary
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class << self
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def summary_for(identifier)
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if identifier =~ /^arxiv\:(.*)/i
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nil # summary_for_arxiv($1.strip)
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elsif identifier =~ /^doi\:\s*(10\.7554\/.*)/i
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summary_for_elife($1.strip)
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elsif identifier =~ /^doi\:(.*)/i
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nil
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end
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end
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def summary_for_elife(doi)
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fluiddb = JSON.parse(open("http://fluiddb.fluidinfo.com/values?query=elifesciences.org/api_v1/article/doi=%22#{doi}%22&tag=*").read)
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# Get the DOI url
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doi = fluiddb['results']['id'].values.first['fluiddb/about']['value'].match(/doi\.org\/(.*)/)[1]
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# Get the eLife url
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url = URI.parse('http://dx.doi.org')
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res = Net::HTTP.start(url.host, url.port) {|http|
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http.get("/#{doi}")
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}
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url = URI.parse(res['location'])
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res = Net::HTTP.start(url.host, url.port) {|http|
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http.get(url.path)
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}
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elife_xml_url = res['location'] + '.source.xml'
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# Get the eLife paper XML
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xml = Nokogiri::XML(open(elife_xml_url)).css('abstract[abstract-type="executive-summary"] p')
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summary = {}
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summary[:summary_html] = xml.to_html
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summary[:summary_text] = xml.text
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summary
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end
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end
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end
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# -*- encoding: utf-8 -*-
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lib = File.expand_path('../lib', __FILE__)
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$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
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require 'paper_summary/version'
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Gem::Specification.new do |gem|
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gem.name = "paper_summary"
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gem.version = PaperSummary::VERSION
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gem.authors = ["Jure Triglav"]
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gem.email = ["juretriglav@gmail.com"]
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gem.summary = %q{Paper_summary gem gets the summary for papers with a DOI or an arXiv identifier}
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gem.description = %q{Summary getter for scientific papers}
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gem.homepage = "http://github.com/jure/paper_summary"
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gem.files = `git ls-files`.split($/)
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gem.executables = gem.files.grep(%r{^bin/}).map{ |f| File.basename(f) }
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gem.test_files = gem.files.grep(%r{^(test|spec|features)/})
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gem.require_paths = ["lib"]
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gem.add_development_dependency "pry"
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# Tests
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gem.add_development_dependency "rake"
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gem.add_development_dependency "webmock"
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gem.add_runtime_dependency "nokogiri", ["= 1.5.6"]
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end
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HTTP/1.1 303 See Other
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Server: Apache-Coyote/1.1
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Vary: Accept
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Location: http://elife.elifesciences.org/lookup/doi/10.7554/eLife.00013
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Expires: Thu, 25 Jul 2013 09:30:47 GMT
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Content-Type: text/html;charset=utf-8
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Content-Length: 208
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Date: Wed, 24 Jul 2013 10:24:44 GMT
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<HTML><HEAD><TITLE>Handle Redirect</TITLE></HEAD>
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<BODY><A HREF="http://elife.elifesciences.org/lookup/doi/10.7554/eLife.00013">http://elife.elifesciences.org/lookup/doi/10.7554/eLife.00013</A></BODY></HTML>
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