paper_summary 0.0.1
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- checksums.yaml +7 -0
- data/.gitignore +20 -0
- data/Gemfile +4 -0
- data/LICENSE.txt +22 -0
- data/README.md +45 -0
- data/Rakefile +10 -0
- data/lib/paper_summary/version.rb +3 -0
- data/lib/paper_summary.rb +48 -0
- data/paper_summary.gemspec +25 -0
- data/test/dx_doi.raw +12 -0
- data/test/elife.xml +7 -0
- data/test/elife_lookup.raw +14 -0
- data/test/fluiddb.json +1 -0
- data/test/test_helper.rb +1 -0
- data/test/test_paper_summary.rb +43 -0
- metadata +120 -0
checksums.yaml
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---
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!binary "U0hBMQ==":
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metadata.gz: e29dde93f78030ecd160e079d036fb5ebcd0ade5
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data.tar.gz: 3a477844e8786573203684e071962c27610151ec
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!binary "U0hBNTEy":
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metadata.gz: e124162bb51ccff184cba284df95f34d1269eace18b7dd6c0be7f80b58d973ae042bfd881a52a094066994a40e11a3a5575fa6f554517a17db77a5e5be90b1ef
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data.tar.gz: 6a00be595abe1997016c988d975e68c8fa700d738efc2a11c9244904ba43afb47f72b35c8f8f725be133d5f7b512e9138d488eea6c2b5941ac7c210cb808eabd
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data/.gitignore
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data/Gemfile
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data/LICENSE.txt
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Copyright (c) 2013 Jure Triglav
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MIT License
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Permission is hereby granted, free of charge, to any person obtaining
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a copy of this software and associated documentation files (the
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"Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to
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permit persons to whom the Software is furnished to do so, subject to
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the following conditions:
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The above copyright notice and this permission notice shall be
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included in all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
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LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
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OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
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WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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data/README.md
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# PaperMetadata
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PaperMetadata is a gem that gets a publication's metadata by accessing the CrossRef OpenURL API.
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## Installation
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Add this line to your application's Gemfile:
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gem 'paper_metadata'
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And then execute:
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$ bundle
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Or install it yourself as:
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$ gem install paper_metadata
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## Usage
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You can use PaperMetadata like this:
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result = PaperMetadata.metadata_for('doi:10.1021/ac1014832')
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The result will be a hash similar to this one:
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{ :volume=>"82",
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:isssue=>"19",
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:first_page=>"8153",
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:last_page=>"8160",
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:title=>
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"Basic Modeling Approach To Optimize Elemental Imaging by Laser Ablation ICPMS",
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:authors=>"Jure Triglav, Johannes T. van Elteren, Vid S. Šelih",
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:journal=>"Anal. Chem. 2010",
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:resource=>"http://pubs.acs.org/doi/abs/10.1021/ac1014832" }
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## Contributing
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1. Fork it
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2. Create your feature branch (`git checkout -b my-new-feature`)
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3. Commit your changes (`git commit -am 'Add some feature'`)
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4. Push to the branch (`git push origin my-new-feature`)
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5. Create new Pull Request
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Be sure to run the specs too.
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data/Rakefile
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require 'paper_summary/version'
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require 'nokogiri'
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require 'net/http'
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require 'open-uri'
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require 'cgi'
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require 'uri'
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require 'json'
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require 'pry'
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module PaperSummary
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class << self
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def summary_for(identifier)
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if identifier =~ /^arxiv\:(.*)/i
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nil # summary_for_arxiv($1.strip)
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elsif identifier =~ /^doi\:\s*(10\.7554\/.*)/i
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summary_for_elife($1.strip)
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elsif identifier =~ /^doi\:(.*)/i
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nil
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end
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end
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def summary_for_elife(doi)
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fluiddb = JSON.parse(open("http://fluiddb.fluidinfo.com/values?query=elifesciences.org/api_v1/article/doi=%22#{doi}%22&tag=*").read)
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# Get the DOI url
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doi = fluiddb['results']['id'].values.first['fluiddb/about']['value'].match(/doi\.org\/(.*)/)[1]
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# Get the eLife url
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url = URI.parse('http://dx.doi.org')
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res = Net::HTTP.start(url.host, url.port) {|http|
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http.get("/#{doi}")
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}
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url = URI.parse(res['location'])
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res = Net::HTTP.start(url.host, url.port) {|http|
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http.get(url.path)
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}
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elife_xml_url = res['location'] + '.source.xml'
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# Get the eLife paper XML
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xml = Nokogiri::XML(open(elife_xml_url)).css('abstract[abstract-type="executive-summary"] p')
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summary = {}
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summary[:summary_html] = xml.to_html
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summary[:summary_text] = xml.text
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summary
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end
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end
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end
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# -*- encoding: utf-8 -*-
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lib = File.expand_path('../lib', __FILE__)
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$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
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require 'paper_summary/version'
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Gem::Specification.new do |gem|
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gem.name = "paper_summary"
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gem.version = PaperSummary::VERSION
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gem.authors = ["Jure Triglav"]
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gem.email = ["juretriglav@gmail.com"]
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gem.summary = %q{Paper_summary gem gets the summary for papers with a DOI or an arXiv identifier}
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gem.description = %q{Summary getter for scientific papers}
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gem.homepage = "http://github.com/jure/paper_summary"
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gem.files = `git ls-files`.split($/)
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gem.executables = gem.files.grep(%r{^bin/}).map{ |f| File.basename(f) }
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gem.test_files = gem.files.grep(%r{^(test|spec|features)/})
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gem.require_paths = ["lib"]
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gem.add_development_dependency "pry"
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# Tests
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gem.add_development_dependency "rake"
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gem.add_development_dependency "webmock"
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gem.add_runtime_dependency "nokogiri", ["= 1.5.6"]
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end
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data/test/dx_doi.raw
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HTTP/1.1 303 See Other
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Server: Apache-Coyote/1.1
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Vary: Accept
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Location: http://elife.elifesciences.org/lookup/doi/10.7554/eLife.00013
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Expires: Thu, 25 Jul 2013 09:30:47 GMT
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Content-Type: text/html;charset=utf-8
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Content-Length: 208
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Date: Wed, 24 Jul 2013 10:24:44 GMT
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<HTML><HEAD><TITLE>Handle Redirect</TITLE></HEAD>
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<BODY><A HREF="http://elife.elifesciences.org/lookup/doi/10.7554/eLife.00013">http://elife.elifesciences.org/lookup/doi/10.7554/eLife.00013</A></BODY></HTML>
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