paneron-register 0.2.0 → 0.3.0
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- checksums.yaml +4 -4
- data/.irbrc +1 -0
- data/.pryrc +1 -0
- data/README.adoc +163 -19
- data/docs/examples.adoc +91 -0
- data/lib/paneron/register/hierarchical.rb +24 -0
- data/lib/paneron/register/raw/data_set.rb +349 -34
- data/lib/paneron/register/raw/item.rb +147 -23
- data/lib/paneron/register/raw/item_class.rb +140 -23
- data/lib/paneron/register/raw/register.rb +452 -63
- data/lib/paneron/register/register.rb +0 -2
- data/lib/paneron/register/root_finder.rb +24 -0
- data/lib/paneron/register/validatable.rb +40 -0
- data/lib/paneron/register/version.rb +1 -1
- data/lib/paneron/register/writeable.rb +96 -0
- data/lib/paneron/register.rb +5 -0
- data/paneron-register.gemspec +1 -0
- metadata +21 -2
@@ -6,41 +6,179 @@ module Paneron
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module Register
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module Raw
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class DataSet
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-
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include Writeable
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include Validatable
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include RootFinder
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attr_reader :register_path,
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:data_set_name, :extension
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attr_accessor :register
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def initialize(
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data_set_path = nil,
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extension = "yaml",
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register: nil
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)
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unless data_set_path.nil?
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register_path, new_data_set_name = Hierarchical.split_path(data_set_path)
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end
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-
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-
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-
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# Deduce parent from self path,
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# if only self path is specified.
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@register = if register.nil?
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Paneron::Register::Raw::Register.new(
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register_path,
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)
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else
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register
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end
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if register_path != @register.register_path
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raise Paneron::Register::Error,
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"Register path mismatch:\n" \
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"Expected passed in register to align with data set's parent:\n" \
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"#{@register.register_path} != #{register_path}"
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end
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@register_path = register_path
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@data_set_name = data_set_name
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@extension = extension
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@data_set_path = data_set_path
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@data_set_yaml_path = File.join(data_set_path,
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DATA_SET_METADATA_FILENAME)
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@item_classes = {}
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@
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@item_uuids = nil
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@items = {}
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@metadata = nil
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@paneron_metadata = nil
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self.data_set_name = new_data_set_name
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@old_name = @data_set_name
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# {
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# "title" => data_set_name,
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# }
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end
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DATA_SET_METADATA_FILENAME = "/register.yaml"
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PANERON_METADATA_FILENAME = "/panerondataset.yaml"
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def data_set_path
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File.join(register_path, data_set_name)
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end
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def data_set_name=(new_data_set_name)
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if new_data_set_name.nil? || new_data_set_name.empty?
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raise Paneron::Register::Error, "Data set name cannot be empty"
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end
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unless new_data_set_name.is_a?(String)
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raise Paneron::Register::Error, "Data set name must be a string"
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end
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@data_set_name = new_data_set_name
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self.title = new_data_set_name
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end
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def data_set_yaml_path
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File.join(data_set_path,
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DATA_SET_METADATA_FILENAME)
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end
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def paneron_yaml_path
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File.join(data_set_path,
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PANERON_METADATA_FILENAME)
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end
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def parent
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register
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end
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def self.name
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"Data set"
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end
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# Important that the parent paths are existent.
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def save_sequence
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# Save self
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require "fileutils"
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# Move old data set to new path
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old_path = File.join(register_path, @old_name)
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if File.directory?(old_path) && @old_name != data_set_name
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FileUtils.mv(old_path, self_path)
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@old_name = data_set_name
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else
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FileUtils.mkdir_p(self_path)
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end
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# TODO: populate template with sensible defaults
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if @metadata.nil? || @metadata.empty?
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File.write(data_set_yaml_path, self.class.metadata_template.to_yaml)
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else
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File.write(data_set_yaml_path, metadata.to_yaml)
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end
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# TODO: populate template with sensible defaults
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if @paneron_metadata.nil? || @paneron_metadata.empty?
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File.write(paneron_yaml_path,
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self.class.paneron_metadata_template(data_set_name).to_yaml)
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else
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File.write(paneron_yaml_path, paneron_metadata.to_yaml)
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end
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# Save item classes
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item_class_names.each do |item_class_name|
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new_thing = item_classes(item_class_name)
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new_thing.data_set = self
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new_thing.save
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end
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# # Save proposals
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# proposal_uuids.each do |proposal_uuid|
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# proposals(proposal_uuid).save
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# end
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end
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def self_path
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data_set_path
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end
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def
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-
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def is_valid?
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self.data_set_name = data_set_name
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register.valid?
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end
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def set_register(new_register)
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@register = new_register
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end
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def register_path
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@register.register_path
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end
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def add_item_classes(*new_item_classes)
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new_item_classes = [new_item_classes] unless new_item_classes.is_a?(Enumerable)
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new_item_classes.each do |item_class|
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item_class.set_data_set(self)
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@item_classes[item_class.item_class_name] = item_class
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end
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end
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def self.validate_path_before_saving
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true
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end
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def self.validate_path(path)
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unless File.exist?(path)
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raise Paneron::Register::Error,
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"
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"#{name} path (#{path}) does not exist"
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end
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-
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unless File.directory?(path)
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raise Paneron::Register::Error,
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"
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"#{name} path (#{path}) is not a directory"
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end
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-
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data_set_file = File.join(
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path, DATA_SET_METADATA_FILENAME
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)
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unless File.exist?(data_set_file)
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raise Paneron::Register::Error,
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"Data Set metadata file does not exist"
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"Data Set metadata file (#{data_set_file}) does not exist"
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end
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end
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@@ -57,35 +195,212 @@ module Paneron
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end
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end
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def item_classes(item_class_name = nil)
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def item_classes(item_class_name = nil, refresh: false)
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if item_class_name.nil?
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-
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-
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-
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-
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@item_classes = if !refresh && !@item_classes.empty?
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@item_classes
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else
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item_class_names(refresh: refresh).reduce({}) do |acc, item_class_name|
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acc[item_class_name] = item_classes(item_class_name)
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acc
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end
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end
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elsif refresh
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item_classes[item_class_name]
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else
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@item_classes[item_class_name] ||=
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Paneron::Register::Raw::ItemClass.new(
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data_set_path, item_class_name
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File.join(data_set_path, item_class_name),
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data_set: self,
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)
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end
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end
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def
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def spawn_item_class(item_class_name, metadata: {})
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new_item_class = Paneron::Register::Raw::ItemClass.new(
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File.join(data_set_path, item_class_name),
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data_set: self,
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)
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add_item_classes(new_item_class)
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new_item_class
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end
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def item_class_names(refresh: false)
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if refresh || @item_classes.empty?
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Dir.glob(File.join(data_set_path, "*/*.#{extension}"))
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.map { |file| File.basename(File.dirname(file)) }.
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.map { |file| File.basename(File.dirname(file)) }.to_set
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else
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@item_classes.keys
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end
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end
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def item_uuids
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item_classes.values.map(&:item_uuids).flatten
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item_classes.values.map(&:item_uuids).to_set.flatten
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end
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def items(uuid = nil, item_class_name = nil, refresh: false)
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if uuid.nil?
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@items = if !refresh && !@items.empty?
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@items
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else
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item_classes.reduce({}) do |acc, (item_klass_name, item_klass)|
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item_klass.item_uuids.each do |item_uuid|
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acc[item_uuid] = items(item_uuid, item_klass_name)
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end
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acc
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end
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end
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elsif refresh
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items[uuid]
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else
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@items[uuid] ||=
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Paneron::Register::Raw::Item.new(
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uuid,
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File.join(data_set_path, item_class_name),
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item_class: item_classes[item_class_name],
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)
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end
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end
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# TODO: Add validation to register.yaml fields
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# name: Full Name of Data Set
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# stakeholders: [ { roles, name, gitServerUsername, affiliations, contacts } ]
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# version: { id, timestamp }
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# contentSummary:
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# operatingLanguage: { name, country, language }
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# organizations: { uuid..: { name, logoURL } }
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# TODO: Add support to read/write panerondataset.yaml
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# title: short-name
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# type:
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# id: 'npm-paneron-extension-name'
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# version: 0.0.1-alpha1
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279
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def paneron_metadata
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@paneron_metadata ||= begin
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YAML.safe_load_file(
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paneron_yaml_path,
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permitted_classes: [Time, Date, DateTime],
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)
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rescue Errno::ENOENT
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{}
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end
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288
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end
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289
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+
|
290
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def merge_paneron_metadata(other)
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291
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paneron_metadata.merge!(other)
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292
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end
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293
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+
|
294
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+
def paneron_metadata=(new_paneron_metadata)
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295
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+
@paneron_metadata = new_paneron_metadata
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296
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end
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83
297
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|
84
298
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def metadata
|
85
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-
@metadata ||=
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86
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-
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87
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-
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-
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299
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@metadata ||= begin
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YAML.safe_load_file(
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301
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data_set_yaml_path,
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permitted_classes: [Time, Date, DateTime],
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)
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rescue Errno::ENOENT
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{}
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end
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307
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end
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308
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+
|
309
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def merge_metadata(other)
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310
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metadata.merge!(other)
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311
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+
end
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312
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+
|
313
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+
def metadata=(metadata)
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314
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@metadata = metadata
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315
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+
end
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316
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+
|
317
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def name=(new_name)
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318
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metadata["name"] = new_name.to_s
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319
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end
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320
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+
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321
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# This is really just data_set_name
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322
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def title=(new_title)
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323
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paneron_metadata["title"] = new_title.to_s
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324
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+
end
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325
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+
private :title=
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326
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+
|
327
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+
def title
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328
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+
paneron_metadata["title"]
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329
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+
end
|
330
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+
|
331
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+
def stakeholders
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332
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+
metadata["stakeholders"] || []
|
333
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+
end
|
334
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+
|
335
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+
def stakeholders=(new_stakeholders)
|
336
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+
metadata["stakeholders"] ||= new_stakeholders
|
337
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+
end
|
338
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+
|
339
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+
def content_summary
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340
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+
metadata["contentSummary"] || ""
|
341
|
+
end
|
342
|
+
|
343
|
+
def content_summary=(new_content_summary)
|
344
|
+
metadata["contentSummary"] = new_content_summary.to_s
|
345
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+
end
|
346
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+
|
347
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+
def operating_language
|
348
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+
metadata["operatingLanguage"] || {}
|
349
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+
end
|
350
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+
|
351
|
+
def operating_language=(name: "", country: "", language: "")
|
352
|
+
metadata["operatingLanguage"] = {
|
353
|
+
"name" => name.to_s,
|
354
|
+
"country" => country.to_s,
|
355
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+
"language" => language.to_s,
|
356
|
+
}
|
357
|
+
end
|
358
|
+
|
359
|
+
def organizations
|
360
|
+
metadata["organizations"] || {}
|
361
|
+
end
|
362
|
+
|
363
|
+
def organizations=(new_organizations)
|
364
|
+
metadata["organizations"] = case new_organizations
|
365
|
+
when Hash then new_organizations
|
366
|
+
else
|
367
|
+
raise Paneron::Register::Error, "organizations must be a hash"
|
368
|
+
end
|
369
|
+
end
|
370
|
+
|
371
|
+
def self.metadata_template
|
372
|
+
{
|
373
|
+
"name" => "",
|
374
|
+
"stakeholders" => [
|
375
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+
# {
|
376
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+
# "roles" => [],
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377
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+
# "name" => "",
|
378
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+
# "gitServerUsername" => "",
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379
|
+
# "affiliations" => [],
|
380
|
+
# "contacts" => [],
|
381
|
+
# },
|
382
|
+
],
|
383
|
+
"version" => nil, # { "id" => "", "timestamp" => "" },
|
384
|
+
"contentSummary" => "",
|
385
|
+
"operatingLanguage" => {
|
386
|
+
"name" => "English",
|
387
|
+
"country" => "N/A",
|
388
|
+
"language" => "eng",
|
389
|
+
},
|
390
|
+
"organizations" => {
|
391
|
+
# "uuid" => { "name" => "", "logoURL" => "" },
|
392
|
+
},
|
393
|
+
}
|
394
|
+
end
|
395
|
+
|
396
|
+
def self.paneron_metadata_template(title: "")
|
397
|
+
{
|
398
|
+
"title" => "",
|
399
|
+
"type" => {
|
400
|
+
"id" => "",
|
401
|
+
"version" => "",
|
402
|
+
},
|
403
|
+
}
|
89
404
|
end
|
90
405
|
end
|
91
406
|
end
|
@@ -6,51 +6,175 @@ module Paneron
|
|
6
6
|
module Register
|
7
7
|
module Raw
|
8
8
|
class Item
|
9
|
-
|
10
|
-
|
11
|
-
|
9
|
+
include Writeable
|
10
|
+
include Validatable
|
11
|
+
include RootFinder
|
12
|
+
|
13
|
+
attr_reader :item_uuid,
|
12
14
|
:extension
|
15
|
+
attr_accessor :item_class
|
13
16
|
|
14
17
|
def initialize(
|
15
|
-
|
16
|
-
|
17
|
-
extension = "yaml"
|
18
|
+
item_uuid = nil,
|
19
|
+
item_class_path = nil,
|
20
|
+
extension = "yaml",
|
21
|
+
item_class: nil
|
18
22
|
)
|
19
|
-
|
20
|
-
self.
|
21
|
-
@
|
22
|
-
|
23
|
-
|
23
|
+
# Deduce parent from self path,
|
24
|
+
# if only self path is specified.
|
25
|
+
@item_class = if item_class.nil?
|
26
|
+
Paneron::Register::Raw::ItemClass.new(
|
27
|
+
item_class_path,
|
28
|
+
)
|
29
|
+
else
|
30
|
+
item_class
|
31
|
+
end
|
32
|
+
|
33
|
+
require "securerandom"
|
34
|
+
require "uuid"
|
35
|
+
|
36
|
+
@item_uuid = if item_uuid.nil? || item_uuid.empty?
|
37
|
+
SecureRandom.uuid
|
38
|
+
elsif UUID.validate(item_uuid)
|
39
|
+
item_uuid
|
40
|
+
else
|
41
|
+
raise Paneron::Register::Error,
|
42
|
+
"Specified UUID not valid (#{item_uuid})"
|
43
|
+
end
|
44
|
+
|
24
45
|
@extension = extension
|
25
46
|
@to_h = nil
|
47
|
+
@status = nil
|
48
|
+
@data = nil
|
49
|
+
@date_accepted = nil
|
50
|
+
end
|
51
|
+
|
52
|
+
def item_path
|
53
|
+
File.join(item_class_path, "#{item_uuid}.#{extension}")
|
54
|
+
end
|
55
|
+
|
56
|
+
def item_class_path
|
57
|
+
@item_class.item_class_path
|
58
|
+
end
|
59
|
+
|
60
|
+
def set(
|
61
|
+
status: nil,
|
62
|
+
data: nil,
|
63
|
+
date_accepted: nil
|
64
|
+
)
|
65
|
+
self.status = status
|
66
|
+
self.data = data
|
67
|
+
self.date_accepted = date_accepted
|
26
68
|
end
|
27
69
|
|
28
|
-
def
|
70
|
+
def uuid
|
71
|
+
@item_uuid
|
72
|
+
end
|
73
|
+
|
74
|
+
def status
|
75
|
+
@status ||= disk_to_h["status"]
|
76
|
+
end
|
77
|
+
|
78
|
+
def status=(new_status)
|
79
|
+
@status = new_status
|
80
|
+
end
|
81
|
+
|
82
|
+
def data
|
83
|
+
@data ||= disk_to_h["data"]
|
84
|
+
end
|
85
|
+
|
86
|
+
def data=(new_data)
|
87
|
+
@data = new_data
|
88
|
+
end
|
89
|
+
|
90
|
+
# Default is now
|
91
|
+
def date_accepted
|
92
|
+
@date_accepted ||= disk_to_h["dateAccepted"] || DateTime.now
|
93
|
+
end
|
94
|
+
|
95
|
+
def date_accepted=(new_date_accepted)
|
96
|
+
@date_accepted = case new_date_accepted
|
97
|
+
when String then DateTime.parse(new_date_accepted)
|
98
|
+
when DateTime then new_date_accepted
|
99
|
+
when Time, Date then new_date_accepted.to_datetime
|
100
|
+
when NilClass then nil
|
101
|
+
else
|
102
|
+
raise Paneron::Register::Error,
|
103
|
+
"Invalid date: #{new_date_accepted}"
|
104
|
+
end
|
105
|
+
end
|
106
|
+
|
107
|
+
def parent
|
108
|
+
item_class
|
109
|
+
end
|
110
|
+
|
111
|
+
def self.name
|
112
|
+
"Item"
|
113
|
+
end
|
114
|
+
|
115
|
+
def save_sequence
|
116
|
+
# Save self
|
117
|
+
require "fileutils"
|
118
|
+
FileUtils.mkdir_p(item_class_path)
|
119
|
+
|
120
|
+
File.write(item_path, to_h.to_yaml)
|
121
|
+
end
|
122
|
+
|
123
|
+
def self_path
|
124
|
+
item_path
|
125
|
+
end
|
126
|
+
|
127
|
+
def is_valid?
|
128
|
+
item_class.valid?
|
129
|
+
end
|
130
|
+
|
131
|
+
def set_item_class(new_item_class)
|
132
|
+
@item_class = new_item_class
|
133
|
+
end
|
134
|
+
|
135
|
+
def self.validate_path_before_saving
|
136
|
+
true
|
137
|
+
end
|
138
|
+
|
139
|
+
def self.validate_path(path)
|
29
140
|
unless File.exist?(path)
|
30
141
|
raise Paneron::Register::Error,
|
31
|
-
"Item path does not exist"
|
142
|
+
"Item path (#{path}) does not exist"
|
32
143
|
end
|
33
144
|
unless File.file?(path)
|
34
145
|
raise Paneron::Register::Error,
|
35
|
-
"Item path is not a file"
|
146
|
+
"Item path (#{path}) is not a file"
|
36
147
|
end
|
37
148
|
end
|
38
149
|
|
39
150
|
def to_lutaml
|
40
151
|
Paneron::Register::Item.new(
|
41
|
-
id:
|
42
|
-
data:
|
43
|
-
status: Paneron::Register::ItemStatus.new(state:
|
44
|
-
date_accepted:
|
152
|
+
id: item_uuid,
|
153
|
+
data: data,
|
154
|
+
status: Paneron::Register::ItemStatus.new(state: status),
|
155
|
+
date_accepted: date_accepted.to_s,
|
45
156
|
)
|
46
157
|
end
|
47
158
|
|
48
159
|
def to_h
|
49
|
-
|
50
|
-
|
51
|
-
|
52
|
-
|
53
|
-
|
160
|
+
{
|
161
|
+
"id" => item_uuid,
|
162
|
+
"data" => data,
|
163
|
+
"status" => status,
|
164
|
+
"dateAccepted" => date_accepted,
|
165
|
+
}
|
166
|
+
end
|
167
|
+
|
168
|
+
def disk_to_h
|
169
|
+
if File.exist?(item_path)
|
170
|
+
@disk_to_h ||=
|
171
|
+
YAML.safe_load_file(
|
172
|
+
item_path,
|
173
|
+
permitted_classes: [Time, Date, DateTime],
|
174
|
+
)
|
175
|
+
else
|
176
|
+
{}
|
177
|
+
end
|
54
178
|
end
|
55
179
|
end
|
56
180
|
end
|