orf_finder 0.1.0 → 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/orf_finder.rb +7 -3
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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metadata.gz: 8f48e6149b1ea707c2b01bc7aee4365170ffad5c
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4
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data.tar.gz: 9b5bc776cefd1a134f235523191a5fe8890c0f01
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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metadata.gz: 24ac885e6ea010783409aaa1fd9ae9ac8af49e05c05e7862654dcd011f4ef5f5c0b56f43fe1cfeddf92125e5387e79cdcf9b666584a98a05fa052e441879c101
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7
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data.tar.gz: 6dc9265d5115681dcf0723add34d513d95d987f25534961a862c0d73db97088677c6cdd3bb5584aa4aaf3d21b4ede7632f3296dccf5fe3b7c96057ec3dbc0c99
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data/lib/orf_finder.rb
CHANGED
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@@ -18,15 +18,18 @@ class ORFFinder
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options = DEFAULT_OPTIONS.merge(options.nil? ? {} : options)
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#
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@output = {}
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-
@output[:direct]
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-
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-
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@output[:direct] = ORF.new(sequence, options, logger) if options[:direct]
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#
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return unless options[:reverse]
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compl = sequence.complement
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@output[:reverse] = ORF.new(compl, options, logger)
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end
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def nt
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res = {}
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@output.each do |key, value|
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res[key] = value.nt
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res[key][:sequence] = value.seq
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end
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res
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end
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@@ -35,6 +38,7 @@ class ORFFinder
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res = {}
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@output.each do |key, value|
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res[key] = value.aa
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res[key][:sequence] = value.sequence.translate.to_s
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end
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res
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: orf_finder
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version: !ruby/object:Gem::Version
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-
version: 0.1.
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version: 0.1.2
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platform: ruby
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authors:
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- André Veríssimo
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2016-01-
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date: 2016-01-25 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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