orf_finder 0.0.1 → 0.1.0

checksums.yaml

@@ -1,7 +1,7 @@
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data/lib/orf.rb

@@ -216,13 +216,15 @@ class ORF
     fallback = []
     # iterate on each start codon
     sequences_in_frame({ start: start, stop: stop },
-                           { valid: valid, fallback: fallback },
-                           seq_size,
-                           frame,
-                           start_idxs.empty? || stop_idxs.empty?)
+                       { valid: valid, fallback: fallback },
+                       seq_size,
+                       frame,
+                       start_idxs.empty? || stop_idxs.empty?)
     if valid.empty?
       valid = fallback.uniq.collect do |r|
-        if get_range_str(r[:start], r[:stop], false).size == size_of_frame(frame)
+        if get_range_str(r[:start],
+                         r[:stop],
+                         false).size == size_of_frame(frame)
           nil
         else
           r

data/lib/orf_finder.rb

@@ -10,7 +10,6 @@ class ORFFinder
                       reverse: true,
                       direct: true,
                       min: 6,
-                      default_to_seq: false,
                       debug: false }
 
   def initialize(sequence, options = {}, logger = nil)

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: orf_finder
 version: !ruby/object:Gem::Version
-  version: 0.0.1
+  version: 0.1.0
 platform: ruby
 authors:
 - André Veríssimo
@@ -87,7 +87,7 @@ files:
 - lib/orf.rb
 - lib/orf_common.rb
 - lib/orf_finder.rb
-homepage: http://rubygems.org/gems/hola
+homepage: http://github.com/averissimo/orf_finder
 licenses:
 - GPL v3
 metadata: {}