opentox-ruby-api-wrapper 1.5.5 → 1.5.6

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Files changed (4) hide show
  1. data/Rakefile +13 -14
  2. data/VERSION +1 -1
  3. data/lib/environment.rb +2 -1
  4. metadata +112 -35
data/Rakefile CHANGED
@@ -9,13 +9,12 @@ begin
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  gem.description = %Q{Ruby wrapper for the OpenTox REST API (http://www.opentox.org)}
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  gem.email = "helma@in-silico.ch"
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  gem.homepage = "http://github.com/helma/opentox-ruby-api-wrapper"
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- gem.authors = ["Christoph Helma"]
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+ gem.authors = ["Christoph Helma, Martin Guetlein"]
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+ # dependencies
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  [ "sinatra",
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  "emk-sinatra-url-for",
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  "sinatra-respond_to",
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  "sinatra-static-assets",
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- "dm-more",
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- "dm-core",
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  "rest-client",
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  "rack",
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  "rack-contrib",
@@ -23,20 +22,20 @@ begin
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  "nokogiri",
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  "rubyzip",
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  "builder",
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- "do_mysql",
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- "data_objects",
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  "roo",
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  "spreadsheet",
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  "google-spreadsheet-ruby",
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- "tmail",
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- "haml"
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-
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- ].each do |dep|
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- gem.add_dependency dep
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- end
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- ['cucumber','jeweler'].each do |dep|
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- gem.add_development_dependency dep
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- end
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+ "tmail"
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+ ].each { |dep| gem.add_dependency dep }
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+ [ "dm-core",
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+ 'dm-serializer',
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+ 'dm-timestamps',
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+ 'dm-types',
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+ 'dm-migrations',
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+ "dm-mysql-adapter"
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+ ].each {|dep| gem.add_dependency dep, ">= 1" }
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+ gem.add_dependency "haml", ">=3"
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+ ['cucumber','jeweler'].each { |dep| gem.add_development_dependency dep }
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  gem.files = FileList["[A-Z]*", "{bin,generators,lib,test}/**/*", 'lib/jeweler/templates/.gitignore']
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  gem.files.include %w(lib/tasks/owl.rb, lib/environment.rb, lib/algorithm.rb, lib/compound.rb, lib/dataset.rb, lib/model.rb, lib/utils.rb, lib/validation.rb, lib/templates/*)
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  # gem is a Gem::Specification... see http://www.rubygems.org/read/chapter/20 for additional settings
data/VERSION CHANGED
@@ -1 +1 @@
1
- 1.5.5
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+ 1.5.6
data/lib/environment.rb CHANGED
@@ -24,7 +24,7 @@ end
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  # database
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  if @@config[:database]
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- ['dm-core', 'dm-serializer', 'dm-timestamps', 'dm-types'].each{|lib| require lib }
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+ ['dm-core', 'dm-serializer', 'dm-timestamps', 'dm-types', 'dm-migrations' ].each{|lib| require lib }
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  case @@config[:database][:adapter]
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  when /sqlite/i
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  db_dir = File.join(basedir, "db")
@@ -106,6 +106,7 @@ end
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  logfile = "#{LOG_DIR}/#{ENV["RACK_ENV"]}.log"
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  LOGGER = MyLogger.new(logfile,'daily') # daily rotation
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+ LOGGER.level = Logger::WARN if ENV["RACK_ENV"] == 'production'
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  #LOGGER = MyLogger.new(STDOUT)
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  #LOGGER.datetime_format = "%Y-%m-%d %H:%M:%S "
metadata CHANGED
@@ -1,29 +1,32 @@
1
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  --- !ruby/object:Gem::Specification
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  name: opentox-ruby-api-wrapper
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  version: !ruby/object:Gem::Version
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+ hash: 15
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  prerelease: false
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  segments:
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  - 1
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  - 5
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- - 5
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- version: 1.5.5
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+ - 6
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+ version: 1.5.6
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  platform: ruby
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  authors:
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- - Christoph Helma
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+ - Christoph Helma, Martin Guetlein
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2010-05-21 00:00:00 +02:00
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+ date: 2010-06-15 00:00:00 +02:00
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  default_executable:
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: sinatra
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  prerelease: false
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  requirement: &id001 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
@@ -33,9 +36,11 @@ dependencies:
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  name: emk-sinatra-url-for
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  prerelease: false
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  requirement: &id002 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
@@ -45,9 +50,11 @@ dependencies:
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  name: sinatra-respond_to
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  prerelease: false
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  requirement: &id003 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
@@ -57,230 +64,296 @@ dependencies:
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  name: sinatra-static-assets
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  prerelease: false
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  requirement: &id004 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id004
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  - !ruby/object:Gem::Dependency
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- name: dm-more
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+ name: rest-client
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  prerelease: false
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  requirement: &id005 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id005
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  - !ruby/object:Gem::Dependency
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- name: dm-core
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+ name: rack
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  prerelease: false
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  requirement: &id006 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id006
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  - !ruby/object:Gem::Dependency
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- name: rest-client
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+ name: rack-contrib
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  prerelease: false
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  requirement: &id007 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id007
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  - !ruby/object:Gem::Dependency
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- name: rack
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+ name: rack-flash
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  prerelease: false
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  requirement: &id008 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id008
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  - !ruby/object:Gem::Dependency
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- name: rack-contrib
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+ name: nokogiri
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  prerelease: false
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  requirement: &id009 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id009
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  - !ruby/object:Gem::Dependency
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- name: rack-flash
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+ name: rubyzip
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  prerelease: false
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  requirement: &id010 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id010
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  - !ruby/object:Gem::Dependency
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- name: nokogiri
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+ name: builder
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  prerelease: false
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  requirement: &id011 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id011
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  - !ruby/object:Gem::Dependency
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- name: rubyzip
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+ name: roo
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  prerelease: false
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  requirement: &id012 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id012
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  - !ruby/object:Gem::Dependency
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- name: builder
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+ name: spreadsheet
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  prerelease: false
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  requirement: &id013 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id013
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  - !ruby/object:Gem::Dependency
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- name: do_mysql
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+ name: google-spreadsheet-ruby
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  prerelease: false
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  requirement: &id014 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id014
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  - !ruby/object:Gem::Dependency
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- name: data_objects
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+ name: tmail
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  prerelease: false
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  requirement: &id015 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
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  version: "0"
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  type: :runtime
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  version_requirements: *id015
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  - !ruby/object:Gem::Dependency
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- name: roo
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+ name: dm-core
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  prerelease: false
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  requirement: &id016 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 1
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  segments:
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- - 0
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- version: "0"
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+ - 1
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+ version: "1"
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  type: :runtime
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  version_requirements: *id016
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  - !ruby/object:Gem::Dependency
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- name: spreadsheet
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+ name: dm-serializer
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  prerelease: false
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  requirement: &id017 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 1
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  segments:
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- - 0
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- version: "0"
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+ - 1
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+ version: "1"
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  type: :runtime
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  version_requirements: *id017
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  - !ruby/object:Gem::Dependency
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- name: google-spreadsheet-ruby
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+ name: dm-timestamps
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  prerelease: false
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  requirement: &id018 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 1
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  segments:
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- - 0
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- version: "0"
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+ - 1
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+ version: "1"
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  type: :runtime
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  version_requirements: *id018
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  - !ruby/object:Gem::Dependency
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- name: tmail
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+ name: dm-types
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  prerelease: false
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  requirement: &id019 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 1
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  segments:
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- - 0
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- version: "0"
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+ - 1
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+ version: "1"
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  type: :runtime
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  version_requirements: *id019
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  - !ruby/object:Gem::Dependency
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- name: haml
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+ name: dm-migrations
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  prerelease: false
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  requirement: &id020 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 1
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  segments:
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- - 0
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- version: "0"
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+ - 1
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+ version: "1"
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  type: :runtime
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  version_requirements: *id020
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  - !ruby/object:Gem::Dependency
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- name: cucumber
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+ name: dm-mysql-adapter
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  prerelease: false
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  requirement: &id021 !ruby/object:Gem::Requirement
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+ none: false
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 1
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+ segments:
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+ - 1
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+ version: "1"
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+ type: :runtime
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+ version_requirements: *id021
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+ - !ruby/object:Gem::Dependency
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+ name: haml
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+ prerelease: false
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+ requirement: &id022 !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ hash: 5
324
+ segments:
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+ - 3
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+ version: "3"
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+ type: :runtime
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+ version_requirements: *id022
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+ - !ruby/object:Gem::Dependency
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+ name: cucumber
331
+ prerelease: false
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+ requirement: &id023 !ruby/object:Gem::Requirement
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+ none: false
334
+ requirements:
335
+ - - ">="
336
+ - !ruby/object:Gem::Version
337
+ hash: 3
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  segments:
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  - 0
269
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  version: "0"
270
341
  type: :development
271
- version_requirements: *id021
342
+ version_requirements: *id023
272
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  - !ruby/object:Gem::Dependency
273
344
  name: jeweler
274
345
  prerelease: false
275
- requirement: &id022 !ruby/object:Gem::Requirement
346
+ requirement: &id024 !ruby/object:Gem::Requirement
347
+ none: false
276
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  requirements:
277
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
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  segments:
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  - 0
281
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  version: "0"
282
355
  type: :development
283
- version_requirements: *id022
356
+ version_requirements: *id024
284
357
  description: Ruby wrapper for the OpenTox REST API (http://www.opentox.org)
285
358
  email: helma@in-silico.ch
286
359
  executables:
@@ -330,23 +403,27 @@ rdoc_options:
330
403
  require_paths:
331
404
  - lib
332
405
  required_ruby_version: !ruby/object:Gem::Requirement
406
+ none: false
333
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  requirements:
334
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  - - ">="
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  - !ruby/object:Gem::Version
410
+ hash: 3
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  segments:
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  - 0
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  version: "0"
339
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  required_rubygems_version: !ruby/object:Gem::Requirement
415
+ none: false
340
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  requirements:
341
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  - - ">="
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  - !ruby/object:Gem::Version
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+ hash: 3
343
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  segments:
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  - 0
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  version: "0"
346
423
  requirements: []
347
424
 
348
425
  rubyforge_project:
349
- rubygems_version: 1.3.6
426
+ rubygems_version: 1.3.7
350
427
  signing_key:
351
428
  specification_version: 3
352
429
  summary: Ruby wrapper for the OpenTox REST API