opentox-ruby-api-wrapper 1.5.4 → 1.5.5

data/VERSION

@@ -1 +1 @@
-1.5.4
+1.5.5

data/lib/compound.rb

@@ -18,7 +18,9 @@ module OpenTox
 				@uri = File.join(@@config[:services]["opentox-compound"],URI.escape(@inchi))
 			elsif params[:name]
 				# paranoid URI encoding to keep SMILES charges and brackets
-				@inchi = RestClientWrapper.get("#{@@cactus_uri}#{URI.encode(params[:name], Regexp.new("[^#{URI::PATTERN::UNRESERVED}]"))}/stdinchi").chomp
+				@inchi = RestClient.get("#{@@cactus_uri}#{URI.encode(params[:name], Regexp.new("[^#{URI::PATTERN::UNRESERVED}]"))}/stdinchi").body.chomp
+				# this was too hard for me to debug and leads to additional errors (ch)
+				#@inchi = RestClientWrapper.get("#{@@cactus_uri}#{URI.encode(params[:name], Regexp.new("[^#{URI::PATTERN::UNRESERVED}]"))}/stdinchi").chomp
 				@uri = File.join(@@config[:services]["opentox-compound"],URI.escape(@inchi))
 			elsif params[:uri]
 				@uri = params[:uri]

data/lib/config/config_ru.rb

@@ -18,7 +18,7 @@ set :raise_errors, true
 end
  
 use Rack::ShowExceptions
-if MAIL
+if defined?(MAIL)
 
 	# monkeypatch with the original method
 	# strangely enough my mailserver returns "Connection refused - connect(2)" errors without this patch
@@ -41,10 +41,11 @@ if MAIL
 	end
 
 
+	require "socket"
 	use Rack::MailExceptions do |mail|
-			mail.to 'helma@in-silico.ch'
+			mail.to MAIL[:user_name]
 			mail.subject '[ERROR] %s'
-			mail.from "toxcreate@in-silico.ch"
+			mail.from "#{Socket.gethostname}@#{MAIL[:domain]}"
 			mail.smtp MAIL
 	end 
 end

metadata

@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
   segments: 
   - 1
   - 5
-  - 4
-  version: 1.5.4
+  - 5
+  version: 1.5.5
 platform: ruby
 authors: 
 - Christoph Helma