opentox-ruby-api-wrapper 1.1.1 → 1.1.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (5) hide show
  1. data/Rakefile +1 -1
  2. data/VERSION +1 -1
  3. data/bin/{install.sh → opentox-install-debian.sh} +0 -0
  4. data/lib/tasks/opentox.rb +4 -12
  5. metadata +12 -12
data/Rakefile CHANGED
@@ -15,13 +15,13 @@ begin
15
15
  gem.add_dependency "rack"
16
16
  gem.add_dependency "rack-contrib"
17
17
  gem.add_dependency "thin"
18
- gem.add_dependency "cucumber"
19
18
  gem.add_dependency "ezmobius-redis-rb"
20
19
  gem.add_dependency "emk-sinatra-url-for"
21
20
  gem.add_dependency "cehoffman-sinatra-respond_to"
22
21
  gem.add_dependency "dm-core"
23
22
  gem.add_dependency "datamapper"
24
23
  gem.add_dependency "do_sqlite3"
24
+ gem.add_development_dependency "cucumber"
25
25
  gem.files = FileList["[A-Z]*", "{bin,generators,lib,test}/**/*", 'lib/jeweler/templates/.gitignore']
26
26
  gem.files.include %w(lib/tasks/opentox.rb, lib/tasks/redis.rb, lib/environment.rb, lib/algorithm.rb, lib/compound.rb, lib/dataset.rb, lib/feature.rb, lib/model.rb, lib/utils.rb, lib/templates/*)
27
27
  # gem is a Gem::Specification... see http://www.rubygems.org/read/chapter/20 for additional settings
data/VERSION CHANGED
@@ -1 +1 @@
1
- 1.1.1
1
+ 1.1.3
data/bin/{install.sh → opentox-install-debian.sh} RENAMED
File without changes
data/lib/tasks/opentox.rb CHANGED
@@ -22,16 +22,6 @@ end
22
22
 
23
23
  namespace :opentox do
24
24
 
25
- desc "Install required gems"
26
- task :install do
27
- puts `sudo gem install #{@gems}`
28
- end
29
-
30
- desc "Update gems"
31
- task :update do
32
- puts `sudo gem update #{@gems}`
33
- end
34
-
35
25
  namespace :services do
36
26
 
37
27
  desc "Run opentox services"
@@ -51,7 +41,8 @@ namespace :opentox do
51
41
  puts "Cannot start #{service} on port #{port}."
52
42
  end
53
43
  when 'passenger'
54
- `touch #{File.join(dir, 'tmp/restart.txt')}`
44
+ FileUtils.mkdir_p File.join(dir, 'tmp')
45
+ FileUtils.touch File.join(dir, 'tmp/restart.txt')
55
46
  puts "#{service} restarted."
56
47
  else
57
48
  puts "not yet implemented"
@@ -108,7 +99,8 @@ task :start do
108
99
  puts "Cannot start #{service} on port #{port}."
109
100
  end
110
101
  when 'passenger'
111
- `touch tmp/restart.txt`
102
+ FileUtils.mkdir_p File.join(dir, 'tmp')
103
+ FileUtils.touch File.join(dir, 'tmp/restart.txt')
112
104
  puts "#{service} restarted."
113
105
  else
114
106
  puts "not yet implemented"
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: opentox-ruby-api-wrapper
3
3
  version: !ruby/object:Gem::Version
4
- version: 1.1.1
4
+ version: 1.1.3
5
5
  platform: ruby
6
6
  authors:
7
7
  - Christoph Helma
@@ -10,7 +10,7 @@ bindir: bin
10
10
  cert_chain: []
11
11
 
12
12
  date: 2009-11-17 00:00:00 +01:00
13
- default_executable: install.sh
13
+ default_executable: opentox-install-debian.sh
14
14
  dependencies:
15
15
  - !ruby/object:Gem::Dependency
16
16
  name: rest-client
@@ -63,7 +63,7 @@ dependencies:
63
63
  version: "0"
64
64
  version:
65
65
  - !ruby/object:Gem::Dependency
66
- name: cucumber
66
+ name: ezmobius-redis-rb
67
67
  type: :runtime
68
68
  version_requirement:
69
69
  version_requirements: !ruby/object:Gem::Requirement
@@ -73,7 +73,7 @@ dependencies:
73
73
  version: "0"
74
74
  version:
75
75
  - !ruby/object:Gem::Dependency
76
- name: ezmobius-redis-rb
76
+ name: emk-sinatra-url-for
77
77
  type: :runtime
78
78
  version_requirement:
79
79
  version_requirements: !ruby/object:Gem::Requirement
@@ -83,7 +83,7 @@ dependencies:
83
83
  version: "0"
84
84
  version:
85
85
  - !ruby/object:Gem::Dependency
86
- name: emk-sinatra-url-for
86
+ name: cehoffman-sinatra-respond_to
87
87
  type: :runtime
88
88
  version_requirement:
89
89
  version_requirements: !ruby/object:Gem::Requirement
@@ -93,7 +93,7 @@ dependencies:
93
93
  version: "0"
94
94
  version:
95
95
  - !ruby/object:Gem::Dependency
96
- name: cehoffman-sinatra-respond_to
96
+ name: dm-core
97
97
  type: :runtime
98
98
  version_requirement:
99
99
  version_requirements: !ruby/object:Gem::Requirement
@@ -103,7 +103,7 @@ dependencies:
103
103
  version: "0"
104
104
  version:
105
105
  - !ruby/object:Gem::Dependency
106
- name: dm-core
106
+ name: datamapper
107
107
  type: :runtime
108
108
  version_requirement:
109
109
  version_requirements: !ruby/object:Gem::Requirement
@@ -113,7 +113,7 @@ dependencies:
113
113
  version: "0"
114
114
  version:
115
115
  - !ruby/object:Gem::Dependency
116
- name: datamapper
116
+ name: do_sqlite3
117
117
  type: :runtime
118
118
  version_requirement:
119
119
  version_requirements: !ruby/object:Gem::Requirement
@@ -123,8 +123,8 @@ dependencies:
123
123
  version: "0"
124
124
  version:
125
125
  - !ruby/object:Gem::Dependency
126
- name: do_sqlite3
127
- type: :runtime
126
+ name: cucumber
127
+ type: :development
128
128
  version_requirement:
129
129
  version_requirements: !ruby/object:Gem::Requirement
130
130
  requirements:
@@ -135,7 +135,7 @@ dependencies:
135
135
  description: Ruby wrapper for the OpenTox REST API (http://www.opentox.org)
136
136
  email: helma@in-silico.ch
137
137
  executables:
138
- - install.sh
138
+ - opentox-install-debian.sh
139
139
  extensions: []
140
140
 
141
141
  extra_rdoc_files:
@@ -146,7 +146,7 @@ files:
146
146
  - README.rdoc
147
147
  - Rakefile
148
148
  - VERSION
149
- - bin/install.sh
149
+ - bin/opentox-install-debian.sh
150
150
  - lib/algorithm.rb
151
151
  - lib/compound.rb
152
152
  - lib/dataset.rb