opentox-dataset 5.0.0pre1

data/bin/dataset-install

@@ -0,0 +1,61 @@
+#!/bin/sh
+
+# Installs Opentox Webservice.
+# Author: Christoph Helma, Andreas Maunz.
+
+SELF=$(basename $0 -install)
+[ "`id -u`" = "0" ] && echo "This script must be run as non-root." 1>&2 && exit 1
+
+# Adjust ruby version here!
+RUBY_NUM_VER="1.9.3-p194"
+
+echo
+echo "Welcome to service installation (<Return> to continue)."
+read delete_me
+
+
+# check wd is root of service
+DIR=`pwd`
+if echo $DIR | grep "$SELF/bin" >/dev/null 2>&1 ; then cd ..; fi
+
+# # # Boot the script
+
+# load base config, helper funs, environment
+OT_CONFIG_DIR="$HOME/.opentox"
+! [ -f "$OT_CONFIG_DIR/config/install/config.sh" ] && echo "config.sh not found." 1>&2 && exit 1 || . $OT_CONFIG_DIR/config/install/config.sh
+! [ -f "$OT_PREFIX/install/utils.sh" ] && echo "utils.sh not found." 1>&2 && exit 1 || . $OT_PREFIX/install/utils.sh
+[ -f $OT_CONFIG_DIR/opentox-ui.sh ] && . $OT_CONFIG_DIR/opentox-ui.sh # should have been done by user already
+RUBY_DIR="$HOME/.rbenv/versions/$RUBY_NUM_VER"
+
+
+# # # Install
+
+check_utils "rbenv find"
+check_log $SELF
+
+if [ "$OT_BRANCH" = "development" ]; then
+  cmd="test -d $OT_PREFIX/opentox-server" && run_cmd "$cmd" "Opentox-server"
+  cmd="test -d $OT_PREFIX/opentox-client" && run_cmd "$cmd" "Opentox-client"
+fi
+
+
+# log directory for this service
+[ -d $OT_CONFIG_DIR/config/$SELF ] || cmd="mkdir -p $OT_CONFIG_DIR/config/$SELF" && run_cmd "$cmd" "Config directory"
+
+# ruby
+install_ruby
+
+# self
+echo
+install_with_bundler
+
+# config
+[ -f $OT_CONFIG_DIR/config/$SELF.rb ] || touch $OT_CONFIG_DIR/config/$SELF.rb
+if ! cat "$OT_CONFIG_DIR/config/$SELF.rb" | grep "four_store">/dev/null 2>&1; then echo '$four_store = { :uri => "http://localhost:9088", :user => "", :password => "" }' >> $OT_CONFIG_DIR/config/$SELF.rb; fi
+if ! cat "$OT_CONFIG_DIR/config/$SELF.rb" | grep "aa">/dev/null 2>&1; then echo '$aa = { :uri => nil }' >> $OT_CONFIG_DIR/config/$SELF.rb; fi
+if ! cat "$OT_DEFAULT_CONF" | grep "$SELF">/dev/null 2>&1; then echo '$dataset = { :uri => "http://localhost:8083/dataset" }' >> $OT_DEFAULT_CONF; fi
+
+notify
+
+# return to wd
+cd "$DIR"

data/config.ru

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+SERVICE = "dataset"
+require 'bundler'
+Bundler.require
+require './application.rb'
+run OpenTox::Application

data/dataset.gemspec

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+# -*- encoding: utf-8 -*-
+$:.push File.expand_path("../lib", __FILE__)
+
+Gem::Specification.new do |s|
+  s.name        = "opentox-dataset"
+  s.version     = File.read("./VERSION")
+  s.authors     = ["Christoph Helma"]
+  s.email       = ["helma@in-silico.ch"]
+  s.homepage    = "http://github.com/opentox/dataset"
+  s.summary     = %q{OpenTox Dataset Service}
+  s.description = %q{OpenTox Dataset Service}
+  s.license     = 'GPL-3'
+
+  s.rubyforge_project = "dataset"
+
+  s.files         = `git ls-files`.split("\n")
+  s.required_ruby_version = '>= 1.9.2'
+
+  # specify any dependencies here; for example:
+  s.add_runtime_dependency "opentox-server"
+  s.add_runtime_dependency 'roo'
+  #s.add_runtime_dependency 'axlsx'
+  #s.add_runtime_dependency 'simple_xlsx_writer'
+  s.post_install_message = "Please configure your service in ~/.opentox/config/dataset.rb"
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: opentox-dataset
+version: !ruby/object:Gem::Version
+  version: 5.0.0pre1
+  prerelease: 5
+platform: ruby
+authors:
+- Christoph Helma
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2012-08-23 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: opentox-server
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: roo
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+description: OpenTox Dataset Service
+email:
+- helma@in-silico.ch
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- .gitignore
+- .yardopts
+- ChangeLog
+- Gemfile
+- LICENSE
+- README.md
+- Rakefile
+- VERSION
+- application.rb
+- bin/dataset-install
+- config.ru
+- dataset.gemspec
+homepage: http://github.com/opentox/dataset
+licenses:
+- GPL-3
+post_install_message: Please configure your service in ~/.opentox/config/dataset.rb
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: 1.9.2
+required_rubygems_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>'
+    - !ruby/object:Gem::Version
+      version: 1.3.1
+requirements: []
+rubyforge_project: dataset
+rubygems_version: 1.8.18
+signing_key: 
+specification_version: 3
+summary: OpenTox Dataset Service
+test_files: []