openstudio-analysis 1.3.5 → 1.3.6

data/lib/openstudio/analysis/translator/excel.rb

@@ -1,893 +1,893 @@
-# *******************************************************************************
-# OpenStudio(R), Copyright (c) Alliance for Sustainable Energy, LLC.
-# See also https://openstudio.net/license
-# *******************************************************************************
-
-module OpenStudio
-  module Analysis
-    module Translator
-      class Excel
-        attr_reader :version
-        attr_reader :settings
-        attr_reader :variables
-        attr_reader :outputs
-        attr_reader :models
-        attr_reader :weather_files
-        attr_reader :measure_paths
-        attr_reader :weather_paths
-        attr_reader :worker_inits
-        attr_reader :worker_finals
-        attr_reader :export_path
-        attr_reader :cluster_name
-        attr_reader :variables
-        attr_reader :algorithm
-        attr_reader :problem
-        attr_reader :run_setup
-        attr_reader :aws_tags
-
-        # remove these once we have classes to construct the JSON file
-        attr_accessor :name
-        attr_accessor :cluster_name
-        attr_reader :analysis_name
-
-        # methods to override instance variables
-
-        # pass in the filename to read
-        def initialize(xls_filename)
-          @xls_filename = xls_filename
-          @root_path = File.expand_path(File.dirname(@xls_filename))
-
-          @xls = nil
-          # try to read the spreadsheet as a roo object
-          if File.exist?(@xls_filename)
-            @xls = Roo::Spreadsheet.open(@xls_filename)
-          else
-            raise "File #{@xls_filename} does not exist"
-          end
-
-          # Initialize some other instance variables
-          @version = '0.0.1'
-          @analyses = [] # Array o OpenStudio::Analysis. Use method to access
-          @name = nil
-          @analysis_name = nil
-          @settings = {}
-          @weather_files = []
-          @weather_paths = []
-          @models = []
-          @other_files = []
-          @worker_inits = []
-          @worker_finals = []
-          @export_path = './export'
-          @measure_paths = []
-          @number_of_samples = 0 # TODO: remove this
-          @problem = {}
-          @algorithm = {}
-          @outputs = {}
-          @run_setup = {}
-          @aws_tags = []
-        end
-
-        def process
-          @setup = parse_setup
-
-          @version = Semantic::Version.new @version
-          raise "Spreadsheet version #{@version} is no longer supported.  Please upgrade your spreadsheet to at least 0.1.9" if @version < '0.1.9'
-
-          @variables = parse_variables
-
-          @outputs = parse_outputs
-
-          # call validate to make sure everything that is needed exists (i.e. directories)
-          validate_analysis
-        end
-
-        # Helper methods to remove models and add new ones programatically. Note that these should
-        # be moved into a general analysis class
-        def delete_models
-          @models = []
-        end
-
-        def add_model(name, display_name, type, path)
-          @models << {
-            name: name,
-            display_name: display_name,
-            type: type,
-            path: path
-          }
-        end
-
-        def validate_analysis
-          # Setup the paths and do some error checking
-          @measure_paths.each do |mp|
-            raise "Measures directory '#{mp}' does not exist" unless Dir.exist?(mp)
-          end
-
-          @models.uniq!
-          raise 'No seed models defined in spreadsheet' if @models.empty?
-
-          @models.each do |model|
-            raise "Seed model does not exist: #{model[:path]}" unless File.exist?(model[:path])
-          end
-
-          @weather_files.uniq!
-          raise 'No weather files found based on what is in the spreadsheet' if @weather_files.empty?
-
-          @weather_files.each do |wf|
-            raise "Weather file does not exist: #{wf}" unless File.exist?(wf)
-          end
-
-          # This can be a directory as well
-          @other_files.each do |f|
-            raise "Other files do not exist for: #{f[:path]}" unless File.exist?(f[:path])
-          end
-
-          @worker_inits.each do |f|
-            raise "Worker initialization file does not exist for: #{f[:path]}" unless File.exist?(f[:path])
-          end
-
-          @worker_finals.each do |f|
-            raise "Worker finalization file does not exist for: #{f[:path]}" unless File.exist?(f[:path])
-          end
-
-          FileUtils.mkdir_p(@export_path)
-
-          # verify that the measure display names are unique
-          # puts @variables.inspect
-          measure_display_names = @variables['data'].map { |m| m['enabled'] ? m['display_name'] : nil }.compact
-          measure_display_names_mult = measure_display_names.select { |m| measure_display_names.count(m) > 1 }.uniq
-          if measure_display_names_mult && !measure_display_names_mult.empty?
-            raise "Measure Display Names are not unique for '#{measure_display_names_mult.join('\', \'')}'"
-          end
-
-          # verify that all continuous variables have all the data needed and create a name map
-          variable_names = []
-          @variables['data'].each do |measure|
-            if measure['enabled']
-              measure['variables'].each do |variable|
-                # Determine if row is suppose to be an argument or a variable to be perturbed.
-                if variable['variable_type'] == 'variable'
-                  variable_names << variable['display_name']
-
-                  # make sure that variables have static values
-                  if variable['distribution']['static_value'].nil? || variable['distribution']['static_value'] == ''
-                    raise "Variable #{measure['name']}:#{variable['name']} needs a static value"
-                  end
-
-                  if variable['type'] == 'enum' || variable['type'] == 'Choice'
-                    # check something
-                  else # must be an integer or double
-                    if variable['distribution']['type'] == 'discrete_uncertain'
-                      if variable['distribution']['discrete_values'].nil? || variable['distribution']['discrete_values'] == ''
-                        raise "Variable #{measure['name']}:#{variable['name']} needs discrete values"
-                      end
-                    elsif variable['distribution']['type'] == 'integer_sequence'
-                      if variable['distribution']['mean'].nil? || variable['distribution']['mean'] == ''
-                        raise "Variable #{measure['name']}:#{variable['name']} must have a mean/mode"
-                      end
-                      if variable['distribution']['min'].nil? || variable['distribution']['min'] == ''
-                        raise "Variable #{measure['name']}:#{variable['name']} must have a minimum"
-                      end
-                      if variable['distribution']['max'].nil? || variable['distribution']['max'] == ''
-                        raise "Variable #{measure['name']}:#{variable['name']} must have a maximum"
-                      end
-                    else
-                      if variable['distribution']['mean'].nil? || variable['distribution']['mean'] == ''
-                        raise "Variable #{measure['name']}:#{variable['name']} must have a mean"
-                      end
-                      if variable['distribution']['stddev'].nil? || variable['distribution']['stddev'] == ''
-                        raise "Variable #{measure['name']}:#{variable['name']} must have a stddev"
-                      end
-                    end
-
-                    if variable['distribution']['mean'].nil? || variable['distribution']['mean'] == ''
-                      raise "Variable #{measure['name']}:#{variable['name']} must have a mean/mode"
-                    end
-                    if variable['distribution']['min'].nil? || variable['distribution']['min'] == ''
-                      raise "Variable #{measure['name']}:#{variable['name']} must have a minimum"
-                    end
-                    if variable['distribution']['max'].nil? || variable['distribution']['max'] == ''
-                      raise "Variable #{measure['name']}:#{variable['name']} must have a maximum"
-                    end
-                    unless variable['type'] == 'string' || variable['type'] =~ /bool/
-                      if variable['distribution']['min'] > variable['distribution']['max']
-                        raise "Variable min is greater than variable max for #{measure['name']}:#{variable['name']}"
-                      end
-                    end
-
-                  end
-                end
-              end
-            end
-          end
-
-          dupes = variable_names.select { |e| variable_names.count(e) > 1 }.uniq
-          if dupes.count > 0
-            raise "duplicate variable names found in list #{dupes.inspect}"
-          end
-
-          # most of the checks will raise a runtime exception, so this true will never be called
-          true
-        end
-
-        # convert the data in excel's parsed data into an OpenStudio Analysis Object
-        #
-        # @seed_model [Hash] Seed model to set the new analysis to
-        # @append_model_name [Boolean] Append the name of the seed model to the display name
-        # @return [Object] An OpenStudio::Analysis
-        def analysis(seed_model = nil, append_model_name = false)
-          raise 'There are no seed models defined in the excel file. Please add one.' if @models.empty?
-          raise "There are more than one seed models defined in the excel file. Call 'analyses' to return the array" if @models.size > 1 && seed_model.nil?
-
-          seed_model = @models.first if seed_model.nil?
-
-          # Use the programmatic interface to make the analysis
-          # append the model name to the analysis name if requested (normally if there are more than 1 models in the spreadsheet)
-          display_name = append_model_name ? @name + ' ' + seed_model[:display_name] : @name
-
-          a = OpenStudio::Analysis.create(display_name)
-
-          @variables['data'].each do |measure|
-            next unless measure['enabled']
-
-            @measure_paths.each do |measure_path|
-              measure_dir_to_add = "#{measure_path}/#{measure['measure_file_name_directory']}"
-              if Dir.exist? measure_dir_to_add
-                if File.exist? "#{measure_dir_to_add}/measure.rb"
-                  measure['local_path_to_measure'] = "#{measure_dir_to_add}/measure.rb"
-                  break
-                else
-                  raise "Measure in directory '#{measure_dir_to_add}' did not contain a measure.rb file"
-                end
-              end
-            end
-
-            raise "Could not find measure '#{measure['name']}' in directory named '#{measure['measure_file_name_directory']}' in the measure paths '#{@measure_paths.join(', ')}'" unless measure['local_path_to_measure']
-
-            a.workflow.add_measure_from_excel(measure)
-          end
-
-          @other_files.each do |library|
-            a.libraries.add(library[:path], library_name: library[:lib_zip_name])
-          end
-
-          @worker_inits.each do |w|
-            a.worker_inits.add(w[:path], args: w[:args])
-          end
-
-          @worker_finals.each do |w|
-            a.worker_finalizes.add(w[:path], args: w[:args])
-          end
-
-          # Add in the outputs
-          @outputs['output_variables'].each do |o|
-            o = Hash[o.map { |k, v| [k.to_sym, v] }]
-            a.add_output(o)
-          end
-
-          a.analysis_type = @problem['analysis_type']
-          @algorithm.each do |k, v|
-            a.algorithm.set_attribute(k, v)
-          end
-
-          # clear out the seed files before adding new ones
-          a.seed_model = seed_model[:path]
-
-          # clear out the weather files before adding new ones
-          a.weather_files.clear
-          @weather_paths.each do |wp|
-            a.weather_files.add_files(wp)
-          end
-
-          a
-        end
-
-        # Return an array of analyses objects of OpenStudio::Analysis::Formulation
-        def analyses
-          as = []
-          @models.map do |model|
-            as << analysis(model, @models.count > 1)
-          end
-
-          as
-        end
-
-        # Method to return the cluster name for backwards compatibility
-        def cluster_name
-          @settings['cluster_name']
-        end
-
-        # save_analysis will iterate over each model that is defined in the spreadsheet and save the
-        # zip and json file.
-        def save_analysis
-          analyses.each do |a|
-            puts "Saving JSON and ZIP file for #{@name}:#{a.display_name}"
-            json_file_name = "#{@export_path}/#{a.name}.json"
-            FileUtils.rm_f(json_file_name) if File.exist?(json_file_name)
-            # File.open(json_file_name, 'w') { |f| f << JSON.pretty_generate(new_analysis_json) }
-
-            a.save json_file_name
-            a.save_zip "#{File.dirname(json_file_name)}/#{File.basename(json_file_name, '.*')}.zip"
-          end
-        end
-
-        protected
-
-        # parse_setup will pull out the data on the "setup" tab and store it in memory for later use
-        def parse_setup
-          rows = @xls.sheet('Setup').parse
-          b_settings = false
-          b_run_setup = false
-          b_problem_setup = false
-          b_algorithm_setup = false
-          b_weather_files = false
-          b_models = false
-          b_other_libs = false
-          b_worker_init = false
-          b_worker_final = false
-
-          rows.each do |row|
-            if row[0] == 'Settings'
-              b_settings = true
-              b_run_setup = false
-              b_problem_setup = false
-              b_algorithm_setup = false
-              b_weather_files = false
-              b_models = false
-              b_other_libs = false
-              b_worker_init = false
-              b_worker_final = false
-              next
-            elsif row[0] == 'Running Setup'
-              b_settings = false
-              b_run_setup = true
-              b_problem_setup = false
-              b_algorithm_setup = false
-              b_weather_files = false
-              b_models = false
-              b_other_libs = false
-              b_worker_init = false
-              b_worker_final = false
-              next
-            elsif row[0] == 'Problem Definition'
-              b_settings = false
-              b_run_setup = false
-              b_problem_setup = true
-              b_algorithm_setup = false
-              b_weather_files = false
-              b_models = false
-              b_other_libs = false
-              b_worker_init = false
-              b_worker_final = false
-              next
-            elsif row[0] == 'Algorithm Setup'
-              b_settings = false
-              b_run_setup = false
-              b_problem_setup = false
-              b_algorithm_setup = true
-              b_weather_files = false
-              b_models = false
-              b_other_libs = false
-              b_worker_init = false
-              b_worker_final = false
-              next
-            elsif row[0] == 'Weather Files'
-              b_settings = false
-              b_run_setup = false
-              b_problem_setup = false
-              b_algorithm_setup = false
-              b_weather_files = true
-              b_models = false
-              b_other_libs = false
-              b_worker_init = false
-              b_worker_final = false
-              next
-            elsif row[0] == 'Models'
-              b_settings = false
-              b_run_setup = false
-              b_problem_setup = false
-              b_algorithm_setup = false
-              b_weather_files = false
-              b_models = true
-              b_other_libs = false
-              b_worker_init = false
-              b_worker_final = false
-              next
-            elsif row[0] == 'Other Library Files'
-              b_settings = false
-              b_run_setup = false
-              b_problem_setup = false
-              b_algorithm_setup = false
-              b_weather_files = false
-              b_models = false
-              b_other_libs = true
-              b_worker_init = false
-              b_worker_final = false
-              next
-            elsif row[0] =~ /Worker Initialization Scripts/
-              b_settings = false
-              b_run_setup = false
-              b_problem_setup = false
-              b_algorithm_setup = false
-              b_weather_files = false
-              b_models = false
-              b_other_libs = false
-              b_worker_init = true
-              b_worker_final = false
-              next
-            elsif row[0] =~ /Worker Finalization Scripts/
-              b_settings = false
-              b_run_setup = false
-              b_problem_setup = false
-              b_algorithm_setup = false
-              b_weather_files = false
-              b_models = false
-              b_other_libs = false
-              b_worker_init = false
-              b_worker_final = true
-              next
-            end
-
-            next if row[0].nil?
-
-            if b_settings
-              @version = row[1].chomp if row[0] == 'Spreadsheet Version'
-              @settings[row[0].to_underscore.to_s] = row[1] if row[0]
-              if @settings['cluster_name']
-                @settings['cluster_name'] = @settings['cluster_name'].to_underscore
-              end
-
-              if row[0] == 'AWS Tag'
-                @aws_tags << row[1].strip
-              end
-
-              # type some of the values that we know
-              @settings['proxy_port'] = @settings['proxy_port'].to_i if @settings['proxy_port']
-
-            elsif b_run_setup
-              if row[0] == 'Analysis Name'
-                if row[1]
-                  @name = row[1]
-                else
-                  @name = SecureRandom.uuid
-                end
-                @analysis_name = @name.to_underscore
-              end
-              if row[0] == 'Export Directory'
-                tmp_filepath = row[1]
-                if (Pathname.new tmp_filepath).absolute?
-                  @export_path = tmp_filepath
-                else
-                  @export_path = File.expand_path(File.join(@root_path, tmp_filepath))
-                end
-              end
-              if row[0] == 'Measure Directory'
-                tmp_filepath = row[1]
-                if (Pathname.new tmp_filepath).absolute?
-                  @measure_paths << tmp_filepath
-                else
-                  @measure_paths << File.expand_path(File.join(@root_path, tmp_filepath))
-                end
-              end
-              @run_setup[row[0].to_underscore.to_s] = row[1] if row[0]
-
-              # type cast
-              if @run_setup['allow_multiple_jobs']
-                raise 'allow_multiple_jobs is no longer a valid option in the Excel file, please delete the row and rerun'
-              end
-              if @run_setup['use_server_as_worker']
-                raise 'use_server_as_worker is no longer a valid option in the Excel file, please delete the row and rerun'
-              end
-            elsif b_problem_setup
-              if row[0]
-                v = row[1]
-                v.to_i if v % 1 == 0
-                @problem[row[0].to_underscore.to_s] = v
-              end
-
-            elsif b_algorithm_setup
-              if row[0] && !row[0].empty?
-                v = row[1]
-                v = v.to_i if v % 1 == 0
-                @algorithm[row[0].to_underscore.to_s] = v
-              end
-            elsif b_weather_files
-              if row[0] == 'Weather File'
-                weather_path = row[1]
-                unless (Pathname.new weather_path).absolute?
-                  weather_path = File.expand_path(File.join(@root_path, weather_path))
-                end
-                @weather_paths << weather_path
-                @weather_files += Dir.glob(weather_path)
-              end
-            elsif b_models
-              if row[1]
-                tmp_m_name = row[1]
-              else
-                tmp_m_name = SecureRandom.uuid
-              end
-              # Only add models if the row is flagged
-              if row[0]&.casecmp('model')&.zero?
-                model_path = row[3]
-                unless (Pathname.new model_path).absolute?
-                  model_path = File.expand_path(File.join(@root_path, model_path))
-                end
-                @models << { name: tmp_m_name.to_underscore, display_name: tmp_m_name, type: row[2], path: model_path }
-              end
-            elsif b_other_libs
-              # determine if the path is relative
-              other_path = row[2]
-              unless (Pathname.new other_path).absolute?
-                other_path = File.expand_path(File.join(@root_path, other_path))
-              end
-
-              @other_files << { lib_zip_name: row[1], path: other_path }
-            elsif b_worker_init
-              worker_init_path = row[1]
-              unless (Pathname.new worker_init_path).absolute?
-                worker_init_path = File.expand_path(File.join(@root_path, worker_init_path))
-              end
-
-              @worker_inits << { name: row[0], path: worker_init_path, args: row[2] }
-            elsif b_worker_final
-              worker_final_path = row[1]
-              unless (Pathname.new worker_final_path).absolute?
-                worker_final_path = File.expand_path(File.join(@root_path, worker_final_path))
-              end
-
-              @worker_finals << { name: row[0], path: worker_final_path, args: row[2] }
-            end
-
-            next
-          end
-
-          # do some last checks
-          @measure_paths = ['./measures'] if @measure_paths.empty?
-        end
-
-        # parse_variables will parse the XLS spreadsheet and save the data into
-        # a higher level JSON file.  The JSON file is historic and it should really
-        # be omitted as an intermediate step
-        def parse_variables
-          # clean remove whitespace and unicode chars
-          # The parse is a unique format (https://github.com/Empact/roo/blob/master/lib/roo/base.rb#L444)
-          # If you add a new column and you want that variable in the hash, then you must add it here.
-          # rows = @xls.sheet('Variables').parse(:enabled => "# variable")
-          # puts rows.inspect
-
-          rows = nil
-          begin
-            if @version >= '0.3.3'.to_version
-              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
-                                                   measure_name_or_var_type: /type/i,
-                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
-                                                   measure_file_name_directory: /measure\sdirectory/i,
-                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
-                                                   display_name_short: /parameter\sshort\sdisplay\sname/i,
-                                                   # sampling_method: /sampling\smethod/i,
-                                                   variable_type: /variable\stype/i,
-                                                   units: /units/i,
-                                                   default_value: /static.default\svalue/i,
-                                                   enums: /enumerations/i,
-                                                   min: /min/i,
-                                                   max: /max/i,
-                                                   mode: /mean|mode/i,
-                                                   stddev: /std\sdev/i,
-                                                   delta_x: /delta.x/i,
-                                                   discrete_values: /discrete\svalues/i,
-                                                   discrete_weights: /discrete\sweights/i,
-                                                   distribution: /distribution/i,
-                                                   source: /data\ssource/i,
-                                                   notes: /notes/i,
-                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
-                                                   clean: true)
-            elsif @version >= '0.3.0'.to_version
-              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
-                                                   measure_name_or_var_type: /type/i,
-                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
-                                                   measure_file_name_directory: /measure\sdirectory/i,
-                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
-                                                   # sampling_method: /sampling\smethod/i,
-                                                   variable_type: /variable\stype/i,
-                                                   units: /units/i,
-                                                   default_value: /static.default\svalue/i,
-                                                   enums: /enumerations/i,
-                                                   min: /min/i,
-                                                   max: /max/i,
-                                                   mode: /mean|mode/i,
-                                                   stddev: /std\sdev/i,
-                                                   delta_x: /delta.x/i,
-                                                   discrete_values: /discrete\svalues/i,
-                                                   discrete_weights: /discrete\sweights/i,
-                                                   distribution: /distribution/i,
-                                                   source: /data\ssource/i,
-                                                   notes: /notes/i,
-                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
-                                                   clean: true)
-            elsif @version >= '0.2.0'.to_version
-              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
-                                                   measure_name_or_var_type: /type/i,
-                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
-                                                   measure_file_name_directory: /measure\sdirectory/i,
-                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
-                                                   sampling_method: /sampling\smethod/i,
-                                                   variable_type: /variable\stype/i,
-                                                   units: /units/i,
-                                                   default_value: /static.default\svalue/i,
-                                                   enums: /enumerations/i,
-                                                   min: /min/i,
-                                                   max: /max/i,
-                                                   mode: /mean|mode/i,
-                                                   stddev: /std\sdev/i,
-                                                   delta_x: /delta.x/i,
-                                                   discrete_values: /discrete\svalues/i,
-                                                   discrete_weights: /discrete\sweights/i,
-                                                   distribution: /distribution/i,
-                                                   source: /data\ssource/i,
-                                                   notes: /notes/i,
-                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
-                                                   clean: true)
-            elsif @version >= '0.1.12'.to_version
-              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
-                                                   measure_name_or_var_type: /type/i,
-                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
-                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
-                                                   sampling_method: /sampling\smethod/i,
-                                                   variable_type: /variable\stype/i,
-                                                   units: /units/i,
-                                                   default_value: /static.default\svalue/i,
-                                                   enums: /enumerations/i,
-                                                   min: /min/i,
-                                                   max: /max/i,
-                                                   mode: /mean|mode/i,
-                                                   stddev: /std\sdev/i,
-                                                   delta_x: /delta.x/i,
-                                                   discrete_values: /discrete\svalues/i,
-                                                   discrete_weights: /discrete\sweights/i,
-                                                   distribution: /distribution/i,
-                                                   source: /data\ssource/i,
-                                                   notes: /notes/i,
-                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
-                                                   clean: true)
-            elsif @version >= '0.1.11'.to_version
-              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
-                                                   measure_name_or_var_type: /type/i,
-                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
-                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
-                                                   sampling_method: /sampling\smethod/i,
-                                                   variable_type: /variable\stype/i,
-                                                   units: /units/i,
-                                                   default_value: /static.default\svalue/i,
-                                                   enums: /enumerations/i,
-                                                   min: /min/i,
-                                                   max: /max/i,
-                                                   mode: /mean|mode/i,
-                                                   stddev: /std\sdev/i,
-                                                   # delta_x: /delta.x/i,
-                                                   discrete_values: /discrete\svalues/i,
-                                                   discrete_weights: /discrete\sweights/i,
-                                                   distribution: /distribution/i,
-                                                   source: /data\ssource/i,
-                                                   notes: /notes/i,
-                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
-                                                   clean: true)
-            else
-              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
-                                                   measure_name_or_var_type: /type/i,
-                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
-                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
-                                                   sampling_method: /sampling\smethod/i,
-                                                   variable_type: /variable\stype/i,
-                                                   units: /units/i,
-                                                   default_value: /static.default\svalue/i,
-                                                   enums: /enumerations/i,
-                                                   min: /min/i,
-                                                   max: /max/i,
-                                                   mode: /mean|mode/i,
-                                                   stddev: /std\sdev/i,
-                                                   # delta_x: /delta.x/i,
-                                                   # discrete_values: /discrete\svalues/i,
-                                                   # discrete_weights: /discrete\sweights/i,
-                                                   distribution: /distribution/i,
-                                                   source: /data\ssource/i,
-                                                   notes: /notes/i,
-                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
-                                                   clean: true)
-            end
-          rescue StandardError => e
-            raise "Unable to parse spreadsheet #{@xls_filename} with version #{@version} due to error: #{e.message}"
-          end
-
-          raise "Could not find the sheet name 'Variables' in excel file #{@root_path}" unless rows
-
-          # map the data to another hash that is more easily processed
-          data = {}
-          data['data'] = []
-
-          measure_index = -1
-          variable_index = -1
-          measure_name = nil
-          rows.each_with_index do |row, icnt|
-            # puts "Parsing line: #{icnt}:#{row}"
-
-            # check if we are a measure - nil means that the cell was blank
-            if row[:enabled].nil?
-              if measure_name && data['data'][measure_index]['enabled']
-                variable_index += 1
-
-                var = {}
-                var['variable_type'] = row[:measure_name_or_var_type]
-                var['display_name'] = row[:measure_file_name_or_var_display_name]
-                var['display_name_short'] = row[:display_name_short] ? row[:display_name_short] : var['display_name']
-                var['name'] = row[:measure_type_or_parameter_name_in_measure]
-                var['index'] = variable_index # order of the variable (not sure of its need)
-                var['type'] = row[:variable_type].downcase
-                var['units'] = row[:units]
-                var['distribution'] = {}
-
-                # parse the choices/enums
-                if var['type'] == 'enum' || var['type'] == 'choice' # this is now a choice
-                  if row[:enums]
-                    var['distribution']['enumerations'] = row[:enums].delete('|').split(',').map(&:strip)
-                  end
-                elsif var['type'] == 'bool'
-                  var['distribution']['enumerations'] = []
-                  var['distribution']['enumerations'] << 'true' # TODO: should this be a real bool?
-                  var['distribution']['enumerations'] << 'false'
-                end
-
-                var['distribution']['min'] = row[:min]
-                var['distribution']['max'] = row[:max]
-                var['distribution']['mean'] = row[:mode]
-                var['distribution']['stddev'] = row[:stddev]
-                var['distribution']['discrete_values'] = row[:discrete_values]
-                var['distribution']['discrete_weights'] = row[:discrete_weights]
-                var['distribution']['type'] = row[:distribution]
-                var['distribution']['static_value'] = row[:default_value]
-                var['distribution']['delta_x'] = row[:delta_x]
-
-                # type various values correctly
-                var['distribution']['min'] = typecast_value(var['type'], var['distribution']['min'])
-                var['distribution']['max'] = typecast_value(var['type'], var['distribution']['max'])
-                var['distribution']['mean'] = typecast_value(var['type'], var['distribution']['mean'])
-                var['distribution']['stddev'] = typecast_value(var['type'], var['distribution']['stddev'])
-                var['distribution']['static_value'] = typecast_value(var['type'], var['distribution']['static_value'])
-
-                # eval the discrete value and weight arrays
-                case var['type']
-                  when 'bool', 'boolean'
-                    if var['distribution']['discrete_values']
-                      var['distribution']['discrete_values'] = eval(var['distribution']['discrete_values']).map { |v| v.to_s == 'true' }
-                    end
-                    if var['distribution']['discrete_weights'] && var['distribution']['discrete_weights'] != ''
-                      var['distribution']['discrete_weights'] = eval(var['distribution']['discrete_weights'])
-                    end
-                  else
-                    if var['distribution']['discrete_values']
-                      var['distribution']['discrete_values'] = eval(var['distribution']['discrete_values'])
-                    end
-                    if var['distribution']['discrete_weights'] && var['distribution']['discrete_weights'] != ''
-                      var['distribution']['discrete_weights'] = eval(var['distribution']['discrete_weights'])
-                    end
-                end
-
-                var['distribution']['source'] = row[:source]
-                var['notes'] = row[:notes]
-                var['relation_to_eui'] = row[:relation_to_eui]
-
-                data['data'][measure_index]['variables'] << var
-              end
-            else
-              measure_index += 1
-              variable_index = 0
-              data['data'][measure_index] = {}
-
-              # generate name id
-              # TODO: put this into a logger. puts "Parsing measure #{row[1]}"
-              display_name = row[:measure_name_or_var_type]
-              measure_name = display_name.downcase.strip.tr('-', '_').tr(' ', '_').gsub('__', '_')
-              data['data'][measure_index]['display_name'] = display_name
-              data['data'][measure_index]['name'] = measure_name
-              data['data'][measure_index]['enabled'] = row[:enabled]
-              data['data'][measure_index]['measure_file_name'] = row[:measure_file_name_or_var_display_name]
-              if row[:measure_file_name_directory]
-                data['data'][measure_index]['measure_file_name_directory'] = row[:measure_file_name_directory]
-              else
-                data['data'][measure_index]['measure_file_name_directory'] = row[:measure_file_name_or_var_display_name].to_underscore
-              end
-              data['data'][measure_index]['measure_type'] = row[:measure_type_or_parameter_name_in_measure]
-              data['data'][measure_index]['version'] = @version_id
-
-              data['data'][measure_index]['variables'] = []
-            end
-          end
-
-          data
-        end
-
-        def parse_outputs
-          rows = nil
-          if @version >= '0.3.3'.to_version
-            rows = @xls.sheet('Outputs').parse(display_name: /variable\sdisplay\sname/i,
-                                               display_name_short: /short\sdisplay\sname/i,
-                                               metadata_id: /taxonomy\sidentifier/i,
-                                               name: /^name$/i,
-                                               units: /units/i,
-                                               visualize: /visualize/i,
-                                               export: /export/i,
-                                               variable_type: /variable\stype/i,
-                                               objective_function: /objective\sfunction/i,
-                                               objective_function_target: /objective\sfunction\starget/i,
-                                               scaling_factor: /scale/i,
-                                               objective_function_group: /objective\sfunction\sgroup/i)
-          elsif @version >= '0.3.0'.to_version
-            rows = @xls.sheet('Outputs').parse(display_name: /variable\sdisplay\sname/i,
-                                               # display_name_short: /short\sdisplay\sname/i,
-                                               metadata_id: /taxonomy\sidentifier/i,
-                                               name: /^name$/i,
-                                               units: /units/i,
-                                               visualize: /visualize/i,
-                                               export: /export/i,
-                                               variable_type: /variable\stype/i,
-                                               objective_function: /objective\sfunction/i,
-                                               objective_function_target: /objective\sfunction\starget/i,
-                                               scaling_factor: /scale/i,
-                                               objective_function_group: /objective\sfunction\sgroup/i)
-          else
-            rows = @xls.sheet('Outputs').parse(display_name: /variable\sdisplay\sname/i,
-                                               # display_name_short: /short\sdisplay\sname/i,
-                                               # metadata_id: /taxonomy\sidentifier/i,
-                                               name: /^name$/i,
-                                               units: /units/i,
-                                               # visualize: /visualize/i,
-                                               # export: /export/i,
-                                               # variable_type: /variable\stype/i,
-                                               objective_function: /objective\sfunction/i,
-                                               objective_function_target: /objective\sfunction\starget/i,
-                                               scaling_factor: /scale/i,
-                                               objective_function_group: /objective/i)
-
-          end
-
-          unless rows
-            raise "Could not find the sheet name 'Outputs' in excel file #{@root_path}"
-          end
-
-          data = {}
-          data['output_variables'] = []
-
-          variable_index = -1
-          group_index = 1
-
-          rows.each_with_index do |row, icnt|
-            next if icnt < 1 # skip the first 3 lines of the file
-
-            var = {}
-            var['display_name'] = row[:display_name]
-            var['display_name_short'] = row[:display_name_short] ? row[:display_name_short] : row[:display_name]
-            var['metadata_id'] = row[:metadata_id]
-            var['name'] = row[:name]
-            var['units'] = row[:units]
-            var['visualize'] = row[:visualize]
-            var['export'] = row[:export]
-            var['variable_type'] = row[:variable_type].downcase if row[:variable_type]
-            var['objective_function'] = row[:objective_function]
-            var['objective_function_target'] = row[:objective_function_target]
-            var['scaling_factor'] = row[:scaling_factor]
-
-            if var['objective_function']
-              if row[:objective_function_group].nil?
-                var['objective_function_group'] = group_index
-                group_index += 1
-              else
-                var['objective_function_group'] = row[:objective_function_group]
-              end
-            end
-            data['output_variables'] << var
-          end
-
-          data
-        end
-      end
-    end
-  end
-end
+# *******************************************************************************
+# OpenStudio(R), Copyright (c) Alliance for Sustainable Energy, LLC.
+# See also https://openstudio.net/license
+# *******************************************************************************
+
+module OpenStudio
+  module Analysis
+    module Translator
+      class Excel
+        attr_reader :version
+        attr_reader :settings
+        attr_reader :variables
+        attr_reader :outputs
+        attr_reader :models
+        attr_reader :weather_files
+        attr_reader :measure_paths
+        attr_reader :weather_paths
+        attr_reader :worker_inits
+        attr_reader :worker_finals
+        attr_reader :export_path
+        attr_reader :cluster_name
+        attr_reader :variables
+        attr_reader :algorithm
+        attr_reader :problem
+        attr_reader :run_setup
+        attr_reader :aws_tags
+
+        # remove these once we have classes to construct the JSON file
+        attr_accessor :name
+        attr_accessor :cluster_name
+        attr_reader :analysis_name
+
+        # methods to override instance variables
+
+        # pass in the filename to read
+        def initialize(xls_filename)
+          @xls_filename = xls_filename
+          @root_path = File.expand_path(File.dirname(@xls_filename))
+
+          @xls = nil
+          # try to read the spreadsheet as a roo object
+          if File.exist?(@xls_filename)
+            @xls = Roo::Spreadsheet.open(@xls_filename)
+          else
+            raise "File #{@xls_filename} does not exist"
+          end
+
+          # Initialize some other instance variables
+          @version = '0.0.1'
+          @analyses = [] # Array o OpenStudio::Analysis. Use method to access
+          @name = nil
+          @analysis_name = nil
+          @settings = {}
+          @weather_files = []
+          @weather_paths = []
+          @models = []
+          @other_files = []
+          @worker_inits = []
+          @worker_finals = []
+          @export_path = './export'
+          @measure_paths = []
+          @number_of_samples = 0 # TODO: remove this
+          @problem = {}
+          @algorithm = {}
+          @outputs = {}
+          @run_setup = {}
+          @aws_tags = []
+        end
+
+        def process
+          @setup = parse_setup
+
+          @version = Semantic::Version.new @version
+          raise "Spreadsheet version #{@version} is no longer supported.  Please upgrade your spreadsheet to at least 0.1.9" if @version < '0.1.9'
+
+          @variables = parse_variables
+
+          @outputs = parse_outputs
+
+          # call validate to make sure everything that is needed exists (i.e. directories)
+          validate_analysis
+        end
+
+        # Helper methods to remove models and add new ones programatically. Note that these should
+        # be moved into a general analysis class
+        def delete_models
+          @models = []
+        end
+
+        def add_model(name, display_name, type, path)
+          @models << {
+            name: name,
+            display_name: display_name,
+            type: type,
+            path: path
+          }
+        end
+
+        def validate_analysis
+          # Setup the paths and do some error checking
+          @measure_paths.each do |mp|
+            raise "Measures directory '#{mp}' does not exist" unless Dir.exist?(mp)
+          end
+
+          @models.uniq!
+          raise 'No seed models defined in spreadsheet' if @models.empty?
+
+          @models.each do |model|
+            raise "Seed model does not exist: #{model[:path]}" unless File.exist?(model[:path])
+          end
+
+          @weather_files.uniq!
+          raise 'No weather files found based on what is in the spreadsheet' if @weather_files.empty?
+
+          @weather_files.each do |wf|
+            raise "Weather file does not exist: #{wf}" unless File.exist?(wf)
+          end
+
+          # This can be a directory as well
+          @other_files.each do |f|
+            raise "Other files do not exist for: #{f[:path]}" unless File.exist?(f[:path])
+          end
+
+          @worker_inits.each do |f|
+            raise "Worker initialization file does not exist for: #{f[:path]}" unless File.exist?(f[:path])
+          end
+
+          @worker_finals.each do |f|
+            raise "Worker finalization file does not exist for: #{f[:path]}" unless File.exist?(f[:path])
+          end
+
+          FileUtils.mkdir_p(@export_path)
+
+          # verify that the measure display names are unique
+          # puts @variables.inspect
+          measure_display_names = @variables['data'].map { |m| m['enabled'] ? m['display_name'] : nil }.compact
+          measure_display_names_mult = measure_display_names.select { |m| measure_display_names.count(m) > 1 }.uniq
+          if measure_display_names_mult && !measure_display_names_mult.empty?
+            raise "Measure Display Names are not unique for '#{measure_display_names_mult.join('\', \'')}'"
+          end
+
+          # verify that all continuous variables have all the data needed and create a name map
+          variable_names = []
+          @variables['data'].each do |measure|
+            if measure['enabled']
+              measure['variables'].each do |variable|
+                # Determine if row is suppose to be an argument or a variable to be perturbed.
+                if variable['variable_type'] == 'variable'
+                  variable_names << variable['display_name']
+
+                  # make sure that variables have static values
+                  if variable['distribution']['static_value'].nil? || variable['distribution']['static_value'] == ''
+                    raise "Variable #{measure['name']}:#{variable['name']} needs a static value"
+                  end
+
+                  if variable['type'] == 'enum' || variable['type'] == 'Choice'
+                    # check something
+                  else # must be an integer or double
+                    if variable['distribution']['type'] == 'discrete_uncertain'
+                      if variable['distribution']['discrete_values'].nil? || variable['distribution']['discrete_values'] == ''
+                        raise "Variable #{measure['name']}:#{variable['name']} needs discrete values"
+                      end
+                    elsif variable['distribution']['type'] == 'integer_sequence'
+                      if variable['distribution']['mean'].nil? || variable['distribution']['mean'] == ''
+                        raise "Variable #{measure['name']}:#{variable['name']} must have a mean/mode"
+                      end
+                      if variable['distribution']['min'].nil? || variable['distribution']['min'] == ''
+                        raise "Variable #{measure['name']}:#{variable['name']} must have a minimum"
+                      end
+                      if variable['distribution']['max'].nil? || variable['distribution']['max'] == ''
+                        raise "Variable #{measure['name']}:#{variable['name']} must have a maximum"
+                      end
+                    else
+                      if variable['distribution']['mean'].nil? || variable['distribution']['mean'] == ''
+                        raise "Variable #{measure['name']}:#{variable['name']} must have a mean"
+                      end
+                      if variable['distribution']['stddev'].nil? || variable['distribution']['stddev'] == ''
+                        raise "Variable #{measure['name']}:#{variable['name']} must have a stddev"
+                      end
+                    end
+
+                    if variable['distribution']['mean'].nil? || variable['distribution']['mean'] == ''
+                      raise "Variable #{measure['name']}:#{variable['name']} must have a mean/mode"
+                    end
+                    if variable['distribution']['min'].nil? || variable['distribution']['min'] == ''
+                      raise "Variable #{measure['name']}:#{variable['name']} must have a minimum"
+                    end
+                    if variable['distribution']['max'].nil? || variable['distribution']['max'] == ''
+                      raise "Variable #{measure['name']}:#{variable['name']} must have a maximum"
+                    end
+                    unless variable['type'] == 'string' || variable['type'] =~ /bool/
+                      if variable['distribution']['min'] > variable['distribution']['max']
+                        raise "Variable min is greater than variable max for #{measure['name']}:#{variable['name']}"
+                      end
+                    end
+
+                  end
+                end
+              end
+            end
+          end
+
+          dupes = variable_names.select { |e| variable_names.count(e) > 1 }.uniq
+          if dupes.count > 0
+            raise "duplicate variable names found in list #{dupes.inspect}"
+          end
+
+          # most of the checks will raise a runtime exception, so this true will never be called
+          true
+        end
+
+        # convert the data in excel's parsed data into an OpenStudio Analysis Object
+        #
+        # @seed_model [Hash] Seed model to set the new analysis to
+        # @append_model_name [Boolean] Append the name of the seed model to the display name
+        # @return [Object] An OpenStudio::Analysis
+        def analysis(seed_model = nil, append_model_name = false)
+          raise 'There are no seed models defined in the excel file. Please add one.' if @models.empty?
+          raise "There are more than one seed models defined in the excel file. Call 'analyses' to return the array" if @models.size > 1 && seed_model.nil?
+
+          seed_model = @models.first if seed_model.nil?
+
+          # Use the programmatic interface to make the analysis
+          # append the model name to the analysis name if requested (normally if there are more than 1 models in the spreadsheet)
+          display_name = append_model_name ? @name + ' ' + seed_model[:display_name] : @name
+
+          a = OpenStudio::Analysis.create(display_name)
+
+          @variables['data'].each do |measure|
+            next unless measure['enabled']
+
+            @measure_paths.each do |measure_path|
+              measure_dir_to_add = "#{measure_path}/#{measure['measure_file_name_directory']}"
+              if Dir.exist? measure_dir_to_add
+                if File.exist? "#{measure_dir_to_add}/measure.rb"
+                  measure['local_path_to_measure'] = "#{measure_dir_to_add}/measure.rb"
+                  break
+                else
+                  raise "Measure in directory '#{measure_dir_to_add}' did not contain a measure.rb file"
+                end
+              end
+            end
+
+            raise "Could not find measure '#{measure['name']}' in directory named '#{measure['measure_file_name_directory']}' in the measure paths '#{@measure_paths.join(', ')}'" unless measure['local_path_to_measure']
+
+            a.workflow.add_measure_from_excel(measure)
+          end
+
+          @other_files.each do |library|
+            a.libraries.add(library[:path], library_name: library[:lib_zip_name])
+          end
+
+          @worker_inits.each do |w|
+            a.worker_inits.add(w[:path], args: w[:args])
+          end
+
+          @worker_finals.each do |w|
+            a.worker_finalizes.add(w[:path], args: w[:args])
+          end
+
+          # Add in the outputs
+          @outputs['output_variables'].each do |o|
+            o = Hash[o.map { |k, v| [k.to_sym, v] }]
+            a.add_output(o)
+          end
+
+          a.analysis_type = @problem['analysis_type']
+          @algorithm.each do |k, v|
+            a.algorithm.set_attribute(k, v)
+          end
+
+          # clear out the seed files before adding new ones
+          a.seed_model = seed_model[:path]
+
+          # clear out the weather files before adding new ones
+          a.weather_files.clear
+          @weather_paths.each do |wp|
+            a.weather_files.add_files(wp)
+          end
+
+          a
+        end
+
+        # Return an array of analyses objects of OpenStudio::Analysis::Formulation
+        def analyses
+          as = []
+          @models.map do |model|
+            as << analysis(model, @models.count > 1)
+          end
+
+          as
+        end
+
+        # Method to return the cluster name for backwards compatibility
+        def cluster_name
+          @settings['cluster_name']
+        end
+
+        # save_analysis will iterate over each model that is defined in the spreadsheet and save the
+        # zip and json file.
+        def save_analysis
+          analyses.each do |a|
+            puts "Saving JSON and ZIP file for #{@name}:#{a.display_name}"
+            json_file_name = "#{@export_path}/#{a.name}.json"
+            FileUtils.rm_f(json_file_name) if File.exist?(json_file_name)
+            # File.open(json_file_name, 'w') { |f| f << JSON.pretty_generate(new_analysis_json) }
+
+            a.save json_file_name
+            a.save_zip "#{File.dirname(json_file_name)}/#{File.basename(json_file_name, '.*')}.zip"
+          end
+        end
+
+        protected
+
+        # parse_setup will pull out the data on the "setup" tab and store it in memory for later use
+        def parse_setup
+          rows = @xls.sheet('Setup').parse
+          b_settings = false
+          b_run_setup = false
+          b_problem_setup = false
+          b_algorithm_setup = false
+          b_weather_files = false
+          b_models = false
+          b_other_libs = false
+          b_worker_init = false
+          b_worker_final = false
+
+          rows.each do |row|
+            if row[0] == 'Settings'
+              b_settings = true
+              b_run_setup = false
+              b_problem_setup = false
+              b_algorithm_setup = false
+              b_weather_files = false
+              b_models = false
+              b_other_libs = false
+              b_worker_init = false
+              b_worker_final = false
+              next
+            elsif row[0] == 'Running Setup'
+              b_settings = false
+              b_run_setup = true
+              b_problem_setup = false
+              b_algorithm_setup = false
+              b_weather_files = false
+              b_models = false
+              b_other_libs = false
+              b_worker_init = false
+              b_worker_final = false
+              next
+            elsif row[0] == 'Problem Definition'
+              b_settings = false
+              b_run_setup = false
+              b_problem_setup = true
+              b_algorithm_setup = false
+              b_weather_files = false
+              b_models = false
+              b_other_libs = false
+              b_worker_init = false
+              b_worker_final = false
+              next
+            elsif row[0] == 'Algorithm Setup'
+              b_settings = false
+              b_run_setup = false
+              b_problem_setup = false
+              b_algorithm_setup = true
+              b_weather_files = false
+              b_models = false
+              b_other_libs = false
+              b_worker_init = false
+              b_worker_final = false
+              next
+            elsif row[0] == 'Weather Files'
+              b_settings = false
+              b_run_setup = false
+              b_problem_setup = false
+              b_algorithm_setup = false
+              b_weather_files = true
+              b_models = false
+              b_other_libs = false
+              b_worker_init = false
+              b_worker_final = false
+              next
+            elsif row[0] == 'Models'
+              b_settings = false
+              b_run_setup = false
+              b_problem_setup = false
+              b_algorithm_setup = false
+              b_weather_files = false
+              b_models = true
+              b_other_libs = false
+              b_worker_init = false
+              b_worker_final = false
+              next
+            elsif row[0] == 'Other Library Files'
+              b_settings = false
+              b_run_setup = false
+              b_problem_setup = false
+              b_algorithm_setup = false
+              b_weather_files = false
+              b_models = false
+              b_other_libs = true
+              b_worker_init = false
+              b_worker_final = false
+              next
+            elsif row[0] =~ /Worker Initialization Scripts/
+              b_settings = false
+              b_run_setup = false
+              b_problem_setup = false
+              b_algorithm_setup = false
+              b_weather_files = false
+              b_models = false
+              b_other_libs = false
+              b_worker_init = true
+              b_worker_final = false
+              next
+            elsif row[0] =~ /Worker Finalization Scripts/
+              b_settings = false
+              b_run_setup = false
+              b_problem_setup = false
+              b_algorithm_setup = false
+              b_weather_files = false
+              b_models = false
+              b_other_libs = false
+              b_worker_init = false
+              b_worker_final = true
+              next
+            end
+
+            next if row[0].nil?
+
+            if b_settings
+              @version = row[1].chomp if row[0] == 'Spreadsheet Version'
+              @settings[row[0].to_underscore.to_s] = row[1] if row[0]
+              if @settings['cluster_name']
+                @settings['cluster_name'] = @settings['cluster_name'].to_underscore
+              end
+
+              if row[0] == 'AWS Tag'
+                @aws_tags << row[1].strip
+              end
+
+              # type some of the values that we know
+              @settings['proxy_port'] = @settings['proxy_port'].to_i if @settings['proxy_port']
+
+            elsif b_run_setup
+              if row[0] == 'Analysis Name'
+                if row[1]
+                  @name = row[1]
+                else
+                  @name = SecureRandom.uuid
+                end
+                @analysis_name = @name.to_underscore
+              end
+              if row[0] == 'Export Directory'
+                tmp_filepath = row[1]
+                if (Pathname.new tmp_filepath).absolute?
+                  @export_path = tmp_filepath
+                else
+                  @export_path = File.expand_path(File.join(@root_path, tmp_filepath))
+                end
+              end
+              if row[0] == 'Measure Directory'
+                tmp_filepath = row[1]
+                if (Pathname.new tmp_filepath).absolute?
+                  @measure_paths << tmp_filepath
+                else
+                  @measure_paths << File.expand_path(File.join(@root_path, tmp_filepath))
+                end
+              end
+              @run_setup[row[0].to_underscore.to_s] = row[1] if row[0]
+
+              # type cast
+              if @run_setup['allow_multiple_jobs']
+                raise 'allow_multiple_jobs is no longer a valid option in the Excel file, please delete the row and rerun'
+              end
+              if @run_setup['use_server_as_worker']
+                raise 'use_server_as_worker is no longer a valid option in the Excel file, please delete the row and rerun'
+              end
+            elsif b_problem_setup
+              if row[0]
+                v = row[1]
+                v.to_i if v % 1 == 0
+                @problem[row[0].to_underscore.to_s] = v
+              end
+
+            elsif b_algorithm_setup
+              if row[0] && !row[0].empty?
+                v = row[1]
+                v = v.to_i if v % 1 == 0
+                @algorithm[row[0].to_underscore.to_s] = v
+              end
+            elsif b_weather_files
+              if row[0] == 'Weather File'
+                weather_path = row[1]
+                unless (Pathname.new weather_path).absolute?
+                  weather_path = File.expand_path(File.join(@root_path, weather_path))
+                end
+                @weather_paths << weather_path
+                @weather_files += Dir.glob(weather_path)
+              end
+            elsif b_models
+              if row[1]
+                tmp_m_name = row[1]
+              else
+                tmp_m_name = SecureRandom.uuid
+              end
+              # Only add models if the row is flagged
+              if row[0]&.casecmp('model')&.zero?
+                model_path = row[3]
+                unless (Pathname.new model_path).absolute?
+                  model_path = File.expand_path(File.join(@root_path, model_path))
+                end
+                @models << { name: tmp_m_name.to_underscore, display_name: tmp_m_name, type: row[2], path: model_path }
+              end
+            elsif b_other_libs
+              # determine if the path is relative
+              other_path = row[2]
+              unless (Pathname.new other_path).absolute?
+                other_path = File.expand_path(File.join(@root_path, other_path))
+              end
+
+              @other_files << { lib_zip_name: row[1], path: other_path }
+            elsif b_worker_init
+              worker_init_path = row[1]
+              unless (Pathname.new worker_init_path).absolute?
+                worker_init_path = File.expand_path(File.join(@root_path, worker_init_path))
+              end
+
+              @worker_inits << { name: row[0], path: worker_init_path, args: row[2] }
+            elsif b_worker_final
+              worker_final_path = row[1]
+              unless (Pathname.new worker_final_path).absolute?
+                worker_final_path = File.expand_path(File.join(@root_path, worker_final_path))
+              end
+
+              @worker_finals << { name: row[0], path: worker_final_path, args: row[2] }
+            end
+
+            next
+          end
+
+          # do some last checks
+          @measure_paths = ['./measures'] if @measure_paths.empty?
+        end
+
+        # parse_variables will parse the XLS spreadsheet and save the data into
+        # a higher level JSON file.  The JSON file is historic and it should really
+        # be omitted as an intermediate step
+        def parse_variables
+          # clean remove whitespace and unicode chars
+          # The parse is a unique format (https://github.com/Empact/roo/blob/master/lib/roo/base.rb#L444)
+          # If you add a new column and you want that variable in the hash, then you must add it here.
+          # rows = @xls.sheet('Variables').parse(:enabled => "# variable")
+          # puts rows.inspect
+
+          rows = nil
+          begin
+            if @version >= '0.3.3'.to_version
+              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
+                                                   measure_name_or_var_type: /type/i,
+                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
+                                                   measure_file_name_directory: /measure\sdirectory/i,
+                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
+                                                   display_name_short: /parameter\sshort\sdisplay\sname/i,
+                                                   # sampling_method: /sampling\smethod/i,
+                                                   variable_type: /variable\stype/i,
+                                                   units: /units/i,
+                                                   default_value: /static.default\svalue/i,
+                                                   enums: /enumerations/i,
+                                                   min: /min/i,
+                                                   max: /max/i,
+                                                   mode: /mean|mode/i,
+                                                   stddev: /std\sdev/i,
+                                                   delta_x: /delta.x/i,
+                                                   discrete_values: /discrete\svalues/i,
+                                                   discrete_weights: /discrete\sweights/i,
+                                                   distribution: /distribution/i,
+                                                   source: /data\ssource/i,
+                                                   notes: /notes/i,
+                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
+                                                   clean: true)
+            elsif @version >= '0.3.0'.to_version
+              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
+                                                   measure_name_or_var_type: /type/i,
+                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
+                                                   measure_file_name_directory: /measure\sdirectory/i,
+                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
+                                                   # sampling_method: /sampling\smethod/i,
+                                                   variable_type: /variable\stype/i,
+                                                   units: /units/i,
+                                                   default_value: /static.default\svalue/i,
+                                                   enums: /enumerations/i,
+                                                   min: /min/i,
+                                                   max: /max/i,
+                                                   mode: /mean|mode/i,
+                                                   stddev: /std\sdev/i,
+                                                   delta_x: /delta.x/i,
+                                                   discrete_values: /discrete\svalues/i,
+                                                   discrete_weights: /discrete\sweights/i,
+                                                   distribution: /distribution/i,
+                                                   source: /data\ssource/i,
+                                                   notes: /notes/i,
+                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
+                                                   clean: true)
+            elsif @version >= '0.2.0'.to_version
+              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
+                                                   measure_name_or_var_type: /type/i,
+                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
+                                                   measure_file_name_directory: /measure\sdirectory/i,
+                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
+                                                   sampling_method: /sampling\smethod/i,
+                                                   variable_type: /variable\stype/i,
+                                                   units: /units/i,
+                                                   default_value: /static.default\svalue/i,
+                                                   enums: /enumerations/i,
+                                                   min: /min/i,
+                                                   max: /max/i,
+                                                   mode: /mean|mode/i,
+                                                   stddev: /std\sdev/i,
+                                                   delta_x: /delta.x/i,
+                                                   discrete_values: /discrete\svalues/i,
+                                                   discrete_weights: /discrete\sweights/i,
+                                                   distribution: /distribution/i,
+                                                   source: /data\ssource/i,
+                                                   notes: /notes/i,
+                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
+                                                   clean: true)
+            elsif @version >= '0.1.12'.to_version
+              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
+                                                   measure_name_or_var_type: /type/i,
+                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
+                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
+                                                   sampling_method: /sampling\smethod/i,
+                                                   variable_type: /variable\stype/i,
+                                                   units: /units/i,
+                                                   default_value: /static.default\svalue/i,
+                                                   enums: /enumerations/i,
+                                                   min: /min/i,
+                                                   max: /max/i,
+                                                   mode: /mean|mode/i,
+                                                   stddev: /std\sdev/i,
+                                                   delta_x: /delta.x/i,
+                                                   discrete_values: /discrete\svalues/i,
+                                                   discrete_weights: /discrete\sweights/i,
+                                                   distribution: /distribution/i,
+                                                   source: /data\ssource/i,
+                                                   notes: /notes/i,
+                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
+                                                   clean: true)
+            elsif @version >= '0.1.11'.to_version
+              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
+                                                   measure_name_or_var_type: /type/i,
+                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
+                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
+                                                   sampling_method: /sampling\smethod/i,
+                                                   variable_type: /variable\stype/i,
+                                                   units: /units/i,
+                                                   default_value: /static.default\svalue/i,
+                                                   enums: /enumerations/i,
+                                                   min: /min/i,
+                                                   max: /max/i,
+                                                   mode: /mean|mode/i,
+                                                   stddev: /std\sdev/i,
+                                                   # delta_x: /delta.x/i,
+                                                   discrete_values: /discrete\svalues/i,
+                                                   discrete_weights: /discrete\sweights/i,
+                                                   distribution: /distribution/i,
+                                                   source: /data\ssource/i,
+                                                   notes: /notes/i,
+                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
+                                                   clean: true)
+            else
+              rows = @xls.sheet('Variables').parse(enabled: /# variable/i,
+                                                   measure_name_or_var_type: /type/i,
+                                                   measure_file_name_or_var_display_name: /parameter\sdisplay\sname.*/i,
+                                                   measure_type_or_parameter_name_in_measure: /parameter\sname\sin\smeasure/i,
+                                                   sampling_method: /sampling\smethod/i,
+                                                   variable_type: /variable\stype/i,
+                                                   units: /units/i,
+                                                   default_value: /static.default\svalue/i,
+                                                   enums: /enumerations/i,
+                                                   min: /min/i,
+                                                   max: /max/i,
+                                                   mode: /mean|mode/i,
+                                                   stddev: /std\sdev/i,
+                                                   # delta_x: /delta.x/i,
+                                                   # discrete_values: /discrete\svalues/i,
+                                                   # discrete_weights: /discrete\sweights/i,
+                                                   distribution: /distribution/i,
+                                                   source: /data\ssource/i,
+                                                   notes: /notes/i,
+                                                   relation_to_eui: /typical\svar\sto\seui\srelationship/i,
+                                                   clean: true)
+            end
+          rescue StandardError => e
+            raise "Unable to parse spreadsheet #{@xls_filename} with version #{@version} due to error: #{e.message}"
+          end
+
+          raise "Could not find the sheet name 'Variables' in excel file #{@root_path}" unless rows
+
+          # map the data to another hash that is more easily processed
+          data = {}
+          data['data'] = []
+
+          measure_index = -1
+          variable_index = -1
+          measure_name = nil
+          rows.each_with_index do |row, icnt|
+            # puts "Parsing line: #{icnt}:#{row}"
+
+            # check if we are a measure - nil means that the cell was blank
+            if row[:enabled].nil?
+              if measure_name && data['data'][measure_index]['enabled']
+                variable_index += 1
+
+                var = {}
+                var['variable_type'] = row[:measure_name_or_var_type]
+                var['display_name'] = row[:measure_file_name_or_var_display_name]
+                var['display_name_short'] = row[:display_name_short] ? row[:display_name_short] : var['display_name']
+                var['name'] = row[:measure_type_or_parameter_name_in_measure]
+                var['index'] = variable_index # order of the variable (not sure of its need)
+                var['type'] = row[:variable_type].downcase
+                var['units'] = row[:units]
+                var['distribution'] = {}
+
+                # parse the choices/enums
+                if var['type'] == 'enum' || var['type'] == 'choice' # this is now a choice
+                  if row[:enums]
+                    var['distribution']['enumerations'] = row[:enums].delete('|').split(',').map(&:strip)
+                  end
+                elsif var['type'] == 'bool'
+                  var['distribution']['enumerations'] = []
+                  var['distribution']['enumerations'] << 'true' # TODO: should this be a real bool?
+                  var['distribution']['enumerations'] << 'false'
+                end
+
+                var['distribution']['min'] = row[:min]
+                var['distribution']['max'] = row[:max]
+                var['distribution']['mean'] = row[:mode]
+                var['distribution']['stddev'] = row[:stddev]
+                var['distribution']['discrete_values'] = row[:discrete_values]
+                var['distribution']['discrete_weights'] = row[:discrete_weights]
+                var['distribution']['type'] = row[:distribution]
+                var['distribution']['static_value'] = row[:default_value]
+                var['distribution']['delta_x'] = row[:delta_x]
+
+                # type various values correctly
+                var['distribution']['min'] = typecast_value(var['type'], var['distribution']['min'])
+                var['distribution']['max'] = typecast_value(var['type'], var['distribution']['max'])
+                var['distribution']['mean'] = typecast_value(var['type'], var['distribution']['mean'])
+                var['distribution']['stddev'] = typecast_value(var['type'], var['distribution']['stddev'])
+                var['distribution']['static_value'] = typecast_value(var['type'], var['distribution']['static_value'])
+
+                # eval the discrete value and weight arrays
+                case var['type']
+                  when 'bool', 'boolean'
+                    if var['distribution']['discrete_values']
+                      var['distribution']['discrete_values'] = eval(var['distribution']['discrete_values']).map { |v| v.to_s == 'true' }
+                    end
+                    if var['distribution']['discrete_weights'] && var['distribution']['discrete_weights'] != ''
+                      var['distribution']['discrete_weights'] = eval(var['distribution']['discrete_weights'])
+                    end
+                  else
+                    if var['distribution']['discrete_values']
+                      var['distribution']['discrete_values'] = eval(var['distribution']['discrete_values'])
+                    end
+                    if var['distribution']['discrete_weights'] && var['distribution']['discrete_weights'] != ''
+                      var['distribution']['discrete_weights'] = eval(var['distribution']['discrete_weights'])
+                    end
+                end
+
+                var['distribution']['source'] = row[:source]
+                var['notes'] = row[:notes]
+                var['relation_to_eui'] = row[:relation_to_eui]
+
+                data['data'][measure_index]['variables'] << var
+              end
+            else
+              measure_index += 1
+              variable_index = 0
+              data['data'][measure_index] = {}
+
+              # generate name id
+              # TODO: put this into a logger. puts "Parsing measure #{row[1]}"
+              display_name = row[:measure_name_or_var_type]
+              measure_name = display_name.downcase.strip.tr('-', '_').tr(' ', '_').gsub('__', '_')
+              data['data'][measure_index]['display_name'] = display_name
+              data['data'][measure_index]['name'] = measure_name
+              data['data'][measure_index]['enabled'] = row[:enabled]
+              data['data'][measure_index]['measure_file_name'] = row[:measure_file_name_or_var_display_name]
+              if row[:measure_file_name_directory]
+                data['data'][measure_index]['measure_file_name_directory'] = row[:measure_file_name_directory]
+              else
+                data['data'][measure_index]['measure_file_name_directory'] = row[:measure_file_name_or_var_display_name].to_underscore
+              end
+              data['data'][measure_index]['measure_type'] = row[:measure_type_or_parameter_name_in_measure]
+              data['data'][measure_index]['version'] = @version_id
+
+              data['data'][measure_index]['variables'] = []
+            end
+          end
+
+          data
+        end
+
+        def parse_outputs
+          rows = nil
+          if @version >= '0.3.3'.to_version
+            rows = @xls.sheet('Outputs').parse(display_name: /variable\sdisplay\sname/i,
+                                               display_name_short: /short\sdisplay\sname/i,
+                                               metadata_id: /taxonomy\sidentifier/i,
+                                               name: /^name$/i,
+                                               units: /units/i,
+                                               visualize: /visualize/i,
+                                               export: /export/i,
+                                               variable_type: /variable\stype/i,
+                                               objective_function: /objective\sfunction/i,
+                                               objective_function_target: /objective\sfunction\starget/i,
+                                               scaling_factor: /scale/i,
+                                               objective_function_group: /objective\sfunction\sgroup/i)
+          elsif @version >= '0.3.0'.to_version
+            rows = @xls.sheet('Outputs').parse(display_name: /variable\sdisplay\sname/i,
+                                               # display_name_short: /short\sdisplay\sname/i,
+                                               metadata_id: /taxonomy\sidentifier/i,
+                                               name: /^name$/i,
+                                               units: /units/i,
+                                               visualize: /visualize/i,
+                                               export: /export/i,
+                                               variable_type: /variable\stype/i,
+                                               objective_function: /objective\sfunction/i,
+                                               objective_function_target: /objective\sfunction\starget/i,
+                                               scaling_factor: /scale/i,
+                                               objective_function_group: /objective\sfunction\sgroup/i)
+          else
+            rows = @xls.sheet('Outputs').parse(display_name: /variable\sdisplay\sname/i,
+                                               # display_name_short: /short\sdisplay\sname/i,
+                                               # metadata_id: /taxonomy\sidentifier/i,
+                                               name: /^name$/i,
+                                               units: /units/i,
+                                               # visualize: /visualize/i,
+                                               # export: /export/i,
+                                               # variable_type: /variable\stype/i,
+                                               objective_function: /objective\sfunction/i,
+                                               objective_function_target: /objective\sfunction\starget/i,
+                                               scaling_factor: /scale/i,
+                                               objective_function_group: /objective/i)
+
+          end
+
+          unless rows
+            raise "Could not find the sheet name 'Outputs' in excel file #{@root_path}"
+          end
+
+          data = {}
+          data['output_variables'] = []
+
+          variable_index = -1
+          group_index = 1
+
+          rows.each_with_index do |row, icnt|
+            next if icnt < 1 # skip the first 3 lines of the file
+
+            var = {}
+            var['display_name'] = row[:display_name]
+            var['display_name_short'] = row[:display_name_short] ? row[:display_name_short] : row[:display_name]
+            var['metadata_id'] = row[:metadata_id]
+            var['name'] = row[:name]
+            var['units'] = row[:units]
+            var['visualize'] = row[:visualize]
+            var['export'] = row[:export]
+            var['variable_type'] = row[:variable_type].downcase if row[:variable_type]
+            var['objective_function'] = row[:objective_function]
+            var['objective_function_target'] = row[:objective_function_target]
+            var['scaling_factor'] = row[:scaling_factor]
+
+            if var['objective_function']
+              if row[:objective_function_group].nil?
+                var['objective_function_group'] = group_index
+                group_index += 1
+              else
+                var['objective_function_group'] = row[:objective_function_group]
+              end
+            end
+            data['output_variables'] << var
+          end
+
+          data
+        end
+      end
+    end
+  end
+end