openehr 1.1.0

data/spec/lib/openehr/parser/adl14/openEHR-EHR-OBSERVATION.testassumedvalue.v1.adl

@@ -0,0 +1,99 @@
+archetype (adl_version=1.4)
+	openEHR-EHR-OBSERVATION.testassumedvalue.v1
+
+concept
+	[at0000]	-- Test assumed value
+language
+	original_language = <[ISO_639-1::en]>
+description
+	original_author = <
+		["name"] = <"">
+	>
+	details = <
+		["en"] = <
+			language = <[ISO_639-1::en]>
+			purpose = <"">
+			use = <"">
+			misuse = <"">
+		>
+	>
+	lifecycle_state = <"0">
+	other_contributors = <>
+	other_details = <
+		["references"] = <"">
+		["MD5-CAM-1.0.1"] = <"0B09C5A77713C376B458BDB09F83F018">
+	>
+
+definition
+	OBSERVATION[at0000] matches {	-- Test assumed value
+		data matches {
+			HISTORY[at0001] matches {	-- Event Series
+				events cardinality matches {1..*; unordered} matches {
+					EVENT[at0002] occurrences matches {0..1} matches {	-- Any event
+						data matches {
+							ITEM_TREE[at0003] matches {	-- Tree
+								items cardinality matches {0..*; unordered} matches {
+									ELEMENT[at0004] occurrences matches {0..1} matches {	-- New element
+										value matches {
+											DV_BOOLEAN matches {
+												value matches {True, False; True}
+											}
+										}
+									}
+								}
+							}
+						}
+						state matches {
+							ITEM_TREE[at0005] matches {	-- Tree
+								items cardinality matches {0..*; unordered} matches {
+									ELEMENT[at0006] occurrences matches {0..1} matches {	-- New element
+										value matches {
+											DV_BOOLEAN matches {
+												value matches {True, False; True}
+											}
+										}
+									}
+								}
+							}
+						}
+					}
+				}
+			}
+		}
+	}
+
+ontology
+	term_definitions = <
+		["en"] = <
+			items = <
+				["at0000"] = <
+					text = <"Test assumed value">
+					description = <"unknown">
+				>
+				["at0001"] = <
+					text = <"Event Series">
+					description = <"@ internal @">
+				>
+				["at0002"] = <
+					text = <"Any event">
+					description = <"*">
+				>
+				["at0003"] = <
+					text = <"Tree">
+					description = <"@ internal @">
+				>
+				["at0004"] = <
+					text = <"New element">
+					description = <"*">
+				>
+				["at0005"] = <
+					text = <"Tree">
+					description = <"@ internal @">
+				>
+				["at0006"] = <
+					text = <"New element">
+					description = <"*">
+				>
+			>
+		>
+	>

data/spec/lib/openehr/parser/adl14/openEHR-EHR-SECTION.findings.v1.adl

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+archetype (adl_version=1.4)
+	openEHR-EHR-SECTION.findings.v1
+
+concept
+	[at0000]	-- Clinical findings
+language
+	original_language = <[ISO_639-1::en]>
+description
+	original_author = <
+		["name"] = <"Sam Heard">
+		["organisation"] = <"Ocean Informatics">
+		["date"] = <"9/01/2007">
+		["email"] = <"sam.heard@oceaninformatics.biz">
+	>
+	details = <
+		["en"] = <
+			language = <[ISO_639-1::en]>
+			purpose = <"A heading to contain clinical findings">
+			use = <"A section which only contains observations">
+			keywords = <"findings", ...>
+			misuse = <"">
+		>
+	>
+	lifecycle_state = <"Initial">
+	other_contributors = <>
+
+definition
+	SECTION[at0000] matches {	-- Clinical findings
+		items cardinality matches {0..*; unordered} matches {
+			allow_archetype OBSERVATION occurrences matches {0..1} matches {
+				include
+					archetype_id/value matches {/.*/}
+			}
+		}
+	}
+
+ontology
+	term_definitions = <
+		["en"] = <
+			items = <
+				["at0000"] = <
+					description = <"The findings at this contact">
+					text = <"Clinical findings">
+				>
+			>
+		>
+	>

data/spec/lib/openehr/parser/adl14/openEHR-EHR-SECTION.reason_for_encounter.v1.adl

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+archetype (adl_version=1.4)
+	openEHR-EHR-SECTION.reason_for_encounter.v1
+
+concept
+	[at0000]	-- Reason for encounter
+language
+	original_language = <[ISO_639-1::en]>
+description
+	original_author = <
+		["name"] = <"Sam Heard">
+		["organisation"] = <"Ocean Informatics">
+		["date"] = <"9/01/2007">
+		["email"] = <"sam.heard@oceaninformatics.biz">
+	>
+	details = <
+		["en"] = <
+			language = <[ISO_639-1::en]>
+			purpose = <"A heading to display the reason for encounter">
+			use = <"To record a symptom, problem or other reason for encounter">
+			keywords = <"rfe", "reason">
+			misuse = <"">
+		>
+	>
+	lifecycle_state = <"Initial">
+	other_contributors = <>
+
+definition
+	SECTION[at0000] matches {	-- Reason for encounter
+		items cardinality matches {0..*; unordered} matches {
+			allow_archetype OBSERVATION occurrences matches {1..*} matches {
+				include
+					archetype_id/value matches {/.*/}
+			}
+			allow_archetype EVALUATION occurrences matches {0..1} matches {
+				include
+					archetype_id/value matches {/.*/}
+			}
+		}
+	}
+
+ontology
+	term_definitions = <
+		["en"] = <
+			items = <
+				["at0000"] = <
+					description = <"The reason(s) for this particular encounter">
+					text = <"Reason for encounter">
+				>
+			>
+		>
+	>

data/spec/lib/openehr/parser/adl14/openEHR-EHR-SECTION.summary.v1.adl

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+archetype (adl_version=1.4)
+	openEHR-EHR-SECTION.summary.v1
+
+concept
+	[at0000]	-- Summary
+language
+	original_language = <[ISO_639-1::en]>
+description
+	original_author = <
+		["name"] = <"Sam Heard">
+		["organisation"] = <"Ocean Informatics">
+		["date"] = <"9/01/2007">
+		["email"] = <"sam.heard@oceaninformatics.biz">
+	>
+	details = <
+		["en"] = <
+			language = <[ISO_639-1::en]>
+			purpose = <"A heading containing summary information based on particular evaluation entries">
+			use = <"A heading for organising clinical data under a heading of summary">
+			keywords = <"review", "conclusions", "risk">
+			misuse = <"">
+		>
+	>
+	lifecycle_state = <"Initial">
+	other_contributors = <>
+
+definition
+	SECTION[at0000] matches {	-- Summary
+		items cardinality matches {0..*; unordered} matches {
+			allow_archetype EVALUATION occurrences matches {0..1} matches {
+				include
+					archetype_id/value matches {/clinical_synopsis\.v1/}
+					archetype_id/value matches {/problem\.v1/}
+					archetype_id/value matches {/problem-diagnosis\.v1/}
+					archetype_id/value matches {/problem-diagnosis-histological\.v1/}
+					archetype_id/value matches {/problem-genetic\.v1/}
+					archetype_id/value matches {/risk\.v1/}
+			}
+		}
+	}
+
+ontology
+	term_definitions = <
+		["en"] = <
+			items = <
+				["at0000"] = <
+					description = <"A heading for conclusions and other evaluations">
+					text = <"Summary">
+				>
+			>
+		>
+	>

data/spec/lib/openehr/parser/adl14/openEHR-EHR-SECTION.vital_signs.v1.adl

@@ -0,0 +1,54 @@
+archetype (adl_version=1.4)
+	openEHR-EHR-SECTION.vital_signs.v1
+
+concept
+	[at0000]	-- Vital signs
+language
+	original_language = <[ISO_639-1::en]>
+description
+	original_author = <
+		["name"] = <"Sam Heard">
+		["organisation"] = <"Ocean Informatics">
+		["date"] = <"14/03/2006">
+		["email"] = <"sam.heard@oceaninformatics.biz">
+	>
+	details = <
+		["en"] = <
+			language = <[ISO_639-1::en]>
+			purpose = <"A heading or section which can only contain observations considered to be vital signs. This group of observations is a common set in medicine, and while these often occur separately in health records, when they are measured together this is a significant assessment of wellbeing.">
+			use = <"An organisational heading for vital signs">
+			keywords = <"blood pressure", "temperature", "pulse", "oxygen saturation", "respirations", "observations", "vital", "signs">
+			misuse = <"Does not need to be used to record these entries separately">
+		>
+	>
+	lifecycle_state = <"AuthorDraft">
+	other_contributors = <>
+
+definition
+	SECTION[at0000] matches {	-- Vital signs
+		items cardinality matches {0..*; unordered} matches {
+			allow_archetype OBSERVATION occurrences matches {1..5} matches {
+				include
+					archetype_id/value matches {/blood_pressure\.v1/}
+					archetype_id/value matches {/heart_rate-pulse\.v1/}
+					archetype_id/value matches {/respiration\.v1/}
+					archetype_id/value matches {/body_temperature\.v1/}
+					archetype_id/value matches {/oximetry\.v1/}
+					archetype_id/value matches {/heart_rate\.v1/}
+				exclude
+					archetype_id/value matches {/.*/}
+			}
+		}
+	}
+
+ontology
+	term_definitions = <
+		["en"] = <
+			items = <
+				["at0000"] = <
+					description = <"A group of observations that are recorded at the same time and record the blood pressure, pulse, temperature and other readings">
+					text = <"Vital signs">
+				>
+			>
+		>
+	>

data/spec/lib/openehr/parser/adl_archetype_internal_ref2_spec.rb

@@ -0,0 +1,42 @@
+require File.dirname(__FILE__) + '/../../../spec_helper'
+require File.dirname(__FILE__) + '/parser_spec_helper'
+include OpenEHR::AM::Archetype
+include OpenEHR::AM::Archetype::ConstraintModel
+
+describe ADLParser do
+  context 'test with slash in comment after use node' do
+    before(:all) do
+      @archetype = adl14_archetype('adl-test-entry.archetype_internal_ref2.test.adl')
+    end
+
+    it 'is an instance of Archetype' do
+      @archetype.should be_an_instance_of Archetype
+    end
+
+    context 'attribute2' do
+      before(:all) do
+        @attribute2 = @archetype.definition.attributes[1].children[0]
+      end
+
+      it 'is ArchetypeInternalRef' do
+        @attribute2.should be_an_instance_of ArchetypeInternalRef
+      end
+
+      it 's occurrences upper 2' do
+        @attribute2.occurrences.upper.should be 2
+      end
+
+      it 's occurrences lower 1' do
+        @attribute2.occurrences.lower.should be 1
+      end
+
+      it 's path is /attribute2' do
+        @attribute2.path.should == '/attribute2'
+      end
+
+      it 's target_path is /attribute1' do
+        @attribute2.target_path.should == '/attribute1'
+      end
+    end
+  end
+end

data/spec/lib/openehr/parser/adl_archetype_internal_ref_spec.rb

@@ -0,0 +1,125 @@
+require File.dirname(__FILE__) + '/../../../spec_helper'
+require File.dirname(__FILE__) + '/parser_spec_helper'
+include OpenEHR::Parser
+include OpenEHR::AM::Archetype
+include OpenEHR::AM::Archetype::ConstraintModel
+
+describe ADLParser do
+  context 'ArchetypeInternalRef behavior test' do
+    before(:all) do
+      target_adl_file = 'adl-test-entry.archetype_internal_ref.test.adl'
+      ap = ADLParser.new(ADL14DIR + target_adl_file)
+      @archetype = ap.parse
+    end
+
+    it 'Archetype instance is generated' do
+      @archetype.should be_instance_of Archetype
+    end
+
+    context 'attribute 1 node' do
+      before(:all) do
+        @node = @archetype.definition.attributes[0]
+      end
+
+      it 's path is attribute 1' do
+        @node.path.should == '/attribute1'
+      end
+
+      it 's rm attribute name is SECTION' do
+        @node.rm_attribute_name.should == 'attribute1'
+      end
+
+      context 'children' do
+        before(:all) do
+          @child = @node.children[0]
+        end
+
+        it 's rm type name is SECTION' do
+          @child.rm_type_name.should == 'SECTION'
+        end
+      end
+    end
+
+    context 'attrubute 2 node' do
+      before(:all) do
+        @node = @archetype.definition.attributes[1]
+      end
+
+      it 's path is attribute 2' do
+        @node.path.should == '/attribute2'
+      end
+
+      context 'child' do
+        before(:all) do
+          @child = @node.children[0]
+        end
+
+        it 'is instance of ArchetypeInternalRef' do
+          @child.should be_an_instance_of ArchetypeInternalRef
+        end
+
+        it 's target path is /attribute1' do
+          @child.target_path.should == '/attribute1'
+        end
+
+        it 'path is /attribute2' do
+          @child.path.should == '/attribute2'
+        end
+
+        it 's occurrences upper is 2' do
+          @child.occurrences.upper.should be 2
+        end
+
+        it 's occurrences lower is 1' do
+          @child.occurrences.lower.should be 1
+        end
+      end
+
+      context 'attribute 3 node' do
+        before(:all) do
+          @node = @archetype.definition.attributes[2]
+        end
+
+        it 's path is /attribute3' do
+          @node.path.should == '/attribute3'
+        end
+
+        context 'child1' do
+          before(:all) do
+            @child1 = @node.children[0]
+          end
+
+          it 's path is /attribute3' do
+            @child1.path.should == '/attribute3'
+          end
+
+          it 's target path is /items[at0001]' do
+            @child1.target_path.should == '/items[at0001]'
+          end
+
+          it 's rm type name is COMPLEX_OBJECT' do
+            @child1.rm_type_name.should == 'COMPLEX_OBJECT'
+          end
+        end
+
+        context 'child2' do
+          before(:all) do
+            @child2 = @node.children[1]
+          end
+
+          it 's path is /attribute3' do
+            @child2.path.should == '/attribute3'
+          end
+
+          it 's target path is /items[at0002]' do
+            @child2.target_path.should == '/items[at0002]'
+          end
+
+          it 's rm_type_name is COMPLEX_OBJECT' do
+            @child2.rm_type_name.should == 'COMPLEX_OBJECT'
+          end
+        end
+      end
+    end
+  end
+end