openehr-rails 0.2.2 → 0.4.0

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data/.devcontainer/Dockerfile

@@ -0,0 +1,17 @@
+# syntax=docker/dockerfile:1
+#
+# Dev container for openehr-rails gem development (not the demo app --
+# see docker/demo.Dockerfile for that). Builds from the same Ruby base
+# image as CI/demo for consistency.
+
+ARG RUBY_VERSION=4.0.6
+FROM docker.io/library/ruby:${RUBY_VERSION}-slim
+
+RUN apt-get update -qq && \
+    apt-get install --no-install-recommends -y \
+      build-essential git libffi-dev libsqlite3-dev libyaml-dev pkg-config curl less vim-tiny && \
+    rm -rf /var/lib/apt/lists/* /var/cache/apt/archives/*
+
+RUN gem install bundler rails --no-document
+
+WORKDIR /workspaces/openehr-rails

data/.devcontainer/devcontainer.json

@@ -0,0 +1,13 @@
+{
+  "name": "openehr-rails (gem development)",
+  "build": {
+    "dockerfile": "Dockerfile"
+  },
+  "postCreateCommand": "bundle install",
+  "forwardPorts": [3000],
+  "customizations": {
+    "vscode": {
+      "extensions": ["Shopify.ruby-lsp"]
+    }
+  }
+}

data/.dockerignore

@@ -0,0 +1,12 @@
+# Keep .git -- openehr-rails.gemspec shells out to `git ls-files` at
+# runtime (Bundler re-evaluates path gemspecs on every boot), so it must
+# survive into the build context and the final image.
+
+demo
+coverage
+pkg
+log/*.log
+tmp
+.bundle
+*.lock
+.gem

data/.github/workflows/ci.yml

@@ -0,0 +1,75 @@
+name: CI
+
+on:
+  push:
+    branches: [master]
+  pull_request:
+  workflow_call:
+
+jobs:
+  spec:
+    name: spec (ruby ${{ matrix.ruby }}, rails ${{ matrix.rails }})
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        ruby: ['3.2', '3.3', '3.4', '4.0']
+        rails: ['7_2', '8_0', '8_1']
+    env:
+      BUNDLE_GEMFILE: ${{ github.workspace }}/gemfiles/rails_${{ matrix.rails }}.gemfile
+    steps:
+      - uses: actions/checkout@v4
+      - uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: ${{ matrix.ruby }}
+          bundler-cache: true
+      - name: Run specs
+        run: bundle exec rake spec
+
+  demo-smoke:
+    name: demo smoke (openehr:scaffold end-to-end)
+    runs-on: ubuntu-latest
+    needs: spec
+    steps:
+      - uses: actions/checkout@v4
+      - uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: '4.0'
+          bundler-cache: true
+      - name: Install rails CLI
+        run: gem install rails --no-document
+      - name: Build demo app from OPT templates
+        run: FORCE=1 bash script/build_demo.sh
+      - name: Run demo app's generated request specs
+        working-directory: demo
+        run: bundle exec rspec
+
+  template-smoke:
+    name: application template smoke test
+    runs-on: ubuntu-latest
+    needs: spec
+    steps:
+      - uses: actions/checkout@v4
+      - uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: '4.0'
+          bundler-cache: true
+      - name: Install rails CLI
+        run: gem install rails --no-document
+      - name: Generate a new app from templates/openehr_template.rb
+        env:
+          OPENEHR_RAILS_PATH: ${{ github.workspace }}
+          OPENEHR_SAMPLES: '1'
+        run: |
+          rails new /tmp/openehr_template_smoke --database=sqlite3 --skip-test \
+            -m "$GITHUB_WORKSPACE/templates/openehr_template.rb"
+      - name: Run the generated app's request specs
+        working-directory: /tmp/openehr_template_smoke
+        run: bundle exec rspec
+      - name: Boot check
+        working-directory: /tmp/openehr_template_smoke
+        run: |
+          bin/rails runner '
+            raise "no templates registered" unless OpenehrTemplate.count == 3
+            puts "boot ok: #{OpenehrTemplate.count} templates registered"
+          '

data/.github/workflows/release.yml

@@ -0,0 +1,31 @@
+name: Release
+
+on:
+  push:
+    tags:
+      - 'v*'
+
+permissions:
+  contents: read
+
+jobs:
+  ci:
+    uses: ./.github/workflows/ci.yml
+
+  release:
+    name: Release to RubyGems
+    needs: ci
+    runs-on: ubuntu-latest
+    permissions:
+      id-token: write # required for RubyGems Trusted Publishing (OIDC)
+      contents: read
+    steps:
+      - uses: actions/checkout@v4
+      - uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: '4.0'
+          bundler-cache: true
+      - name: release:check (clean tree, sibling-file tracking, gemspec validity)
+        run: bundle exec rake release:check
+      - name: Release
+        uses: rubygems/release-gem@v1

data/.gitignore

@@ -1,7 +1,9 @@
 /.bundle
 
-/app
-/config
+# Generated demo Rails app (reproducible via script/build_demo.sh)
+/demo
+
+# /app and /config hold the admin engine (controllers, views, routes)
 /public
 /vendor
 /plugin
@@ -26,6 +28,7 @@ pkg
 #bundler
 .bundle
 *.lock
+.gem
 
 #
 # For MacOS:

data/.rspec

@@ -1 +1,2 @@
+--require spec_helper
 --colour

data/.ruby-version

@@ -0,0 +1 @@
+4.0.6

data/CHANGELOG.md

@@ -0,0 +1,106 @@
+# Changelog
+
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [0.4.0] - 2026-08-13
+
+### Added
+- `OpenehrRails.authenticate_with`: a pluggable authentication hook, run
+  as a `before_action` ahead of every engine action (admin UI, AQL
+  console, patient timeline, the `/v1` openEHR REST API, and the `/fhir`
+  facade). Host apps wire in their own mechanism (Devise, HTTP token,
+  anything) with the controller as context. Per-surface differentiation
+  via `openehr_access_scope` (`:admin`/`:rest_api`/`:fhir`).
+- `OpenehrRails.allow_unauthenticated_access`: explicit opt-out for
+  intentionally-open deployments.
+
+### Changed (behavior change -- read before upgrading)
+- **The engine now denies all requests with `403 Forbidden` outside the
+  `development` and `test` environments unless `authenticate_with` or
+  `allow_unauthenticated_access` is configured.** Previously every
+  engine route (including the full openEHR REST API and the FHIR
+  facade's create endpoint) was open with no access control whatsoever.
+  Apps running 0.3.0 in production must configure one of the two before
+  upgrading, or the engine will start responding 403 to everything.
+- `RemoteFetcher` now also rejects loopback/private/link-local (including
+  cloud metadata) addresses, both on the initial URL and on every
+  redirect hop, closing an SSRF gap (previously only the URL scheme was
+  validated).
+- Every generic `rescue_from StandardError` handler across the engine's
+  controllers now logs the exception (class, message, and a short
+  backtrace) via `Rails.logger` before responding -- previously errors
+  were rendered to the client and left no server-side trace at all.
+
+## [0.3.0] - 2026-08-13
+
+### Added
+- `rails g openehr:scaffold`/`openehr:fhir_profile` now accept an OPT URL in
+  place of a local path, via a new `OpenehrRails::Opt::RemoteFetcher`
+  (redirect-following, timeout- and size-bounded HTTP(S) fetch that
+  validates the response actually parses as an operational template).
+- Admin UI (`/openehr`) gained a URL-import field (`OpenehrRails::TemplateImporter`),
+  the URL counterpart to the existing drag & drop upload.
+- AQL query support: `OpenehrRails::Aql` (dataset adapter, query validator,
+  executor) and a `Model.aql(query, params:)` scope on every scaffolded
+  model, plus a browser AQL console at `/openehr/query`.
+- openEHR REST API surface at `/openehr/v1`: `EHR`, `EHR_STATUS`,
+  `COMPOSITION` (create/read/update/delete with optimistic concurrency),
+  and `QUERY` (AQL).
+- Patient timeline UI at `/openehr/ehrs` (per-EHR composition history,
+  grouped by date, with version history disclosure).
+- Docker: `docker/demo.Dockerfile` + `docker/docker-compose.yml` run the
+  full demo app in a container with no local Ruby/Rails install needed;
+  `.devcontainer/` for gem development itself.
+- `templates/openehr_template.rb`: a Rails application template
+  (`rails new myehr -m <url>`) that wires up a brand new app with
+  openehr-rails end to end, optionally scaffolding the same 3 sample
+  templates as the demo. `script/build_starter.sh` wraps it into a
+  standalone repo (README + CI) suitable for a GitHub template repository.
+- CI matrix expanded to Ruby 3.2/3.3/3.4/4.0 x Rails 7.2/8.0/8.1
+  (`gemfiles/rails_{7_2,8_0,8_1}.gemfile`), plus a demo-smoke job that
+  builds the demo app and runs its generated request specs end to end.
+- `LICENSE` file (Apache License 2.0, matching the gemspec's declared
+  license -- previously declared but not actually included in the repo).
+
+### Changed
+- Upgraded the `openehr` runtime dependency from `~> 1.3.0` to `~> 2.0`
+  (currently resolves to 2.0.2).
+- `gem.license` corrected to the valid SPDX identifier `Apache-2.0`
+  (was the non-SPDX string `"Apache 2.0"`).
+- Added `gem.metadata` (`source_code_uri`, `changelog_uri`,
+  `bug_tracker_uri`, `rubygems_mfa_required`) and dropped the deprecated
+  `gem.test_files` assignment.
+
+### Fixed
+- `OpenehrRails::Rm` was never `require`d by `lib/openehr_rails.rb`,
+  silently disabling the entire RM persistence layer (typed node graph,
+  AQL, versioning) in any real host application -- it only appeared to
+  work in this gem's own test suite because the spec support file
+  required it separately. This was the most significant bug found during
+  the 2.0 upgrade work.
+- `OpenehrRails::Opt::Parser`'s raw-content-vs-path detection didn't
+  account for a leading UTF-8 BOM, so any BOM-prefixed OPT (common in
+  real-world exports) misdetected as a file path and crashed. Affected
+  every raw-content caller (`TemplateUploader`, `TemplateRegistry`,
+  `Fhir::ProfileRepository`, `RemoteFetcher`), not just one code path.
+- `RmObjectBuilder#build_composition` never set `uid:`, so
+  `SELECT c/uid/value` always returned nil.
+- `EventContext#setting` used a raw `CODE_PHRASE` where openehr 2.0
+  requires a `DV_CODED_TEXT`.
+
+### Removed
+- Legacy ADL-archetype-only generators (`model`/`controller`/`migration`/
+  `helper`/`assets`/`i18n`/`template`/`template_model`, and their shared
+  `Openehr::Generators::ArchetypedBase`). OPT is now the only supported
+  scaffolding input format; `OpenehrTemplate.from_adl_file` (ADL
+  *registration*, not scaffolding) is unaffected.
+- The `ckm_client` gem dependency (only used by the removed legacy
+  generators).
+
+## [0.2.2] and earlier
+
+Predates this changelog. See `git log` for history back to the project's
+first commit in 2012.

data/CLAUDE.md

@@ -0,0 +1,77 @@
+# CLAUDE.md
+
+This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
+
+## Principle
+
+Follow the TDD framework as advocated by t-wada:
+- 🔴 Red: Write a failing test
+- 🟢 Green: Write the minimal implementation to pass the test
+- 🔵 Refactor: Improve the code while keeping tests green
+- Take small steps
+- Start with fake implementation (hard-coded values)
+- Use triangulation to generalize
+- Direct implementation is OK when the solution is obvious
+- Keep the test list constantly updated
+- Write tests for areas of concern first
+- opt files must not be changed automatically.
+
+
+## Project Overview
+
+This is `openehr-rails`, a Rails engine gem that turns an openEHR Operational Template (`.opt`, ADL2/XML) into a working Rails resource in one command: `rails generate openehr:scaffold path/to/template.opt --fhir` emits a model, migration, controller, views, i18n locale, and (with `--fhir`) HL7 FHIR R5 `StructureDefinition` profiles. Generated models persist both as typed columns (for forms/search) and as full openEHR RM data (canonical JSON + a typed node graph with immutable-append versioning), and are queryable via a growing AQL surface. A mountable admin engine (`/openehr`) provides template upload/management, runtime scaffolding, and a FHIR R5 facade. Legacy ADL-archetype-only generators (model/controller/migration/helper/assets/i18n/template/template_model, based on `Openehr::Generators::ArchetypedBase`) have been removed — OPT is the only supported input format for scaffolding.
+
+## Key Commands
+
+**Testing:**
+- `rake spec` - Run all RSpec tests
+- `rake` - Default task runs specs
+- `bundle exec rspec spec/path/to/specific_spec.rb` - Run specific test file
+
+**Development:**
+- `bundle install` - Install dependencies
+- `bundle exec rake` - Run tests via bundler
+- `bundle exec guard` - Run Guard for automated testing (requires guard-rspec)
+
+**Gem Development:**
+- `rake build` - Build the gem (via bundler/gem_tasks)
+- `rake install` - Install the gem locally
+- `rake release` - Release the gem
+
+**Demo app** (reproducible, git-ignored): `bash script/build_demo.sh` builds a Rails 8 app in `demo/` from the OPTs and seed data in `demo_assets/`, scaffolding three templates (BMI, problem list, blood pressure) with FHIR profiles. See `doc/DEMO_ja.md` for the full walkthrough.
+
+## Architecture & Structure
+
+### Generators (`lib/generators/openehr/`)
+
+- `install/` - one-time setup: mounts the engine at `/openehr`, creates the `OpenehrTemplate` registry model and the `openehr_ehrs` / `openehr_rm_*` RM persistence tables.
+- `scaffold/` - the core generator. Takes an `.opt` file (or, per the roadmap, a remote URL), parses it via `OpenehrRails::Opt::Parser`, extracts fields via `OpenehrRails::Opt::FieldExtractor`, and emits model/migration/controller/views/locale/request-spec/routes. `--namespace` and `--fhir` options available.
+- `fhir_profile/` - emits FHIR R5 `StructureDefinition` JSON per OPT entry into `app/fhir/profiles/`.
+
+### Runtime library (`lib/openehr_rails/`)
+
+- `opt.rb`, `opt/parser.rb`, `opt/field_extractor.rb` - OPT parsing (subclasses `OpenEHR::Parser::OPTParser` from the `openehr` gem) and flattening of ENTRY/ELEMENT constraints into field hashes (`FIELD_MAP` is the single source of truth tying a generated column to an RM path + data type).
+- `storable.rb` - mixed into scaffolded models (`OpenehrRails::Storable`): on save, builds a canonical openEHR RM Composition from `FIELD_MAP`, caches it as JSON (`rm_composition` column), and persists it into the RM graph.
+- `rm/` - the RM persistence layer: `Composition`/`Node`/`DataValue` (STI, `openehr_rm_*` tables), `GraphBuilder` (canonical JSON → graph rows), `CanonicalSerializer` (graph → canonical JSON, round-trip invariant), `GraphPersister` (immutable-append versioning), `RmObjectBuilder` (graph → real `OpenEHR::RM` objects), `Ehr`/`Contribution`/`Version` (audit trail).
+- `aql_queryable.rb` - `Model.find_by_path` (FIELD_MAP lookup with RM-graph fallback); full AQL query support is planned to build on the same path-to-column resolution (see roadmap in the project's plan history).
+- `template_registry.rb`, `template_uploader.rb`, `runtime_scaffolder.rb` - the `OpenehrTemplate` model (supports both OPT and legacy ADL archetype registration) and the admin engine's upload + in-process `openehr:scaffold` invocation.
+- `fhir/` - FHIR R5 facade: profile generation, canonical-RM ⇄ FHIR serialization, resource registry, capability statement, served at `/openehr/fhir` by `app/controllers/openehr_rails/fhir_controller.rb`.
+
+### Testing Structure
+
+- RSpec with `ammeter` for generator specs; in-memory SQLite (`spec/support/active_record.rb`) for RM-layer specs.
+- `spec/generators/openehr/{install,scaffold,fhir_profile}/` - generator specs (only these three generators remain).
+- `spec/openehr_rails/{opt,rm,fhir}/`, `spec/openehr_rails/*_spec.rb` - runtime library specs.
+- `spec/models/openehr_template_spec.rb`, `spec/unit/opt_parser_spec.rb` - registry model and parser specs.
+- OPT fixtures live in `spec/generators/templates/` and `spec/templates/`; do not hand-edit an existing `.opt` fixture (add a new one instead) — **opt files must not be changed automatically.**
+
+## Development Notes
+
+- Ruby 3.0+ required; CI matrix covers 3.2/3.3/3.4/4.0, local dev pinned via `.ruby-version` (currently 4.0.6)
+- Rails 7.0+ and Rails 8.x supported (CI matrix: `gemfiles/rails_{7_2,8_0,8_1}.gemfile`; demo app runs on Rails 8.1)
+- URI compatibility workaround implemented for Ruby 3.4
+- `ostruct` is an explicit development dependency — it left Ruby's default gems as of 4.0, and a couple of specs use `OpenStruct` as a lightweight test double
+- Guard setup available for TDD workflow
+- RuboCop Rails linting configured
+- SimpleCov for test coverage
+- `openehr` gem dependency; see the gem's own README/CHANGELOG for OPT-parser and AQL-engine capabilities and known gaps before relying on either.

data/Guardfile

@@ -0,0 +1,70 @@
+# A sample Guardfile
+# More info at https://github.com/guard/guard#readme
+
+## Uncomment and set this to only include directories you want to watch
+# directories %w(app lib config test spec features) \
+#  .select{|d| Dir.exist?(d) ? d : UI.warning("Directory #{d} does not exist")}
+
+## Note: if you are using the `directories` clause above and you are not
+## watching the project directory ('.'), then you will want to move
+## the Guardfile to a watched dir and symlink it back, e.g.
+#
+#  $ mkdir config
+#  $ mv Guardfile config/
+#  $ ln -s config/Guardfile .
+#
+# and, you'll have to watch "config/Guardfile" instead of "Guardfile"
+
+# Note: The cmd option is now required due to the increasing number of ways
+#       rspec may be run, below are examples of the most common uses.
+#  * bundler: 'bundle exec rspec'
+#  * bundler binstubs: 'bin/rspec'
+#  * spring: 'bin/rspec' (This will use spring if running and you have
+#                          installed the spring binstubs per the docs)
+#  * zeus: 'zeus rspec' (requires the server to be started separately)
+#  * 'just' rspec: 'rspec'
+
+guard :rspec, cmd: "bundle exec rspec" do
+  require "guard/rspec/dsl"
+  dsl = Guard::RSpec::Dsl.new(self)
+
+  # Feel free to open issues for suggestions and improvements
+
+  # RSpec files
+  rspec = dsl.rspec
+  watch(rspec.spec_helper) { rspec.spec_dir }
+  watch(rspec.spec_support) { rspec.spec_dir }
+  watch(rspec.spec_files)
+
+  # Ruby files
+  ruby = dsl.ruby
+  dsl.watch_spec_files_for(ruby.lib_files)
+
+  # # Rails files
+  # rails = dsl.rails(view_extensions: %w(erb haml slim))
+  # dsl.watch_spec_files_for(rails.app_files)
+  # dsl.watch_spec_files_for(rails.views)
+
+  # watch(rails.controllers) do |m|
+  #   [
+  #     rspec.spec.call("routing/#{m[1]}_routing"),
+  #     rspec.spec.call("controllers/#{m[1]}_controller"),
+  #     rspec.spec.call("acceptance/#{m[1]}")
+  #   ]
+  # end
+
+  # # Rails config changes
+  # watch(rails.spec_helper)     { rspec.spec_dir }
+  # watch(rails.routes)          { "#{rspec.spec_dir}/routing" }
+  # watch(rails.app_controller)  { "#{rspec.spec_dir}/controllers" }
+
+  # # Capybara features specs
+  # watch(rails.view_dirs)     { |m| rspec.spec.call("features/#{m[1]}") }
+  # watch(rails.layouts)       { |m| rspec.spec.call("features/#{m[1]}") }
+
+  # # Turnip features and steps
+  # watch(%r{^spec/acceptance/(.+)\.feature$})
+  # watch(%r{^spec/acceptance/steps/(.+)_steps\.rb$}) do |m|
+  #   Dir[File.join("**/#{m[1]}.feature")][0] || "spec/acceptance"
+  # end
+end

data/LICENSE

@@ -0,0 +1,194 @@
+Copyright 2012-2026 Shinji KOBAYASHI
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
+      and distribution as defined by Sections 1 through 9 of this document.
+
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+      direction or management of such entity, whether by contract or
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+      outstanding shares, or (iii) beneficial ownership of such entity.
+
+      "You" (or "Your") shall mean an individual or Legal Entity
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+      "Source" form shall mean the preferred form for making modifications,
+      including but not limited to software source code, documentation
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+      "Work" shall mean the work of authorship, whether in Source or
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+      "Contribution" shall mean any work of authorship, including the
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