openbel-api 1.2.6-java → 1.2.7-java
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +2 -0
- data/VERSION +1 -1
- data/app/openbel/api/helpers/nanopub.rb +159 -0
- data/app/openbel/api/resources/completion.rb +3 -2
- data/app/openbel/api/routes/base.rb +1 -1
- data/app/openbel/api/routes/datasets.rb +33 -22
- data/app/openbel/api/routes/nanopubs.rb +2 -158
- data/bin/bel2.0-example-statements.bel +344 -0
- data/bin/bel2_document_examples.bel +250 -0
- data/bin/test_bel2_validation.py +68 -0
- data/bin/test_results.json +2208 -0
- data/config/config.yml +1 -1
- metadata +10 -2
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#!/usr/bin/env python
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# -*- coding: utf-8 -*-
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"""
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Usage: program.py <customer>
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"""
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import requests
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import json
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base_url = "http://localhost:9292"
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files = ['bel2.0-example-statements.bel', 'bel2_document_examples.bel']
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def send_request(bel):
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# Issue #134
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# GET http://localhost:9292/api/expressions/rxn(reactants(a(CHEBI:superoxide)),products(a(CHEBI:%22hydrogen%20peroxide%22),%20a(CHEBI:%20%22oxygen%22))/validation
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try:
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response = requests.get(
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url=f"{base_url}/api/expressions/{bel}/validation",
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)
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try:
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r = response.json()
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except:
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r = None
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# print(f"Status {response.status_code} Response: {r}")
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return (response.status_code, r)
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except requests.exceptions.RequestException:
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# return (response.status_code, response.json())
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print(f"Error {response.status_code}, {bel}")
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def run_examples():
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results = []
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cnt = error_cnt = success_cnt = 0
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for fn in files:
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with open(fn, 'r') as f:
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for bel in f:
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cnt += 1
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bel = bel.strip()
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print(f"Running bel: {bel}")
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(status, msg) = send_request(bel)
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if status != 200:
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error_cnt += 1
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results.append((status, bel, msg))
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else:
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success_cnt += 1
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print(f"Total: {cnt} Success: {success_cnt} Errors: {error_cnt}")
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with open('test_results.json', 'w') as f:
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json.dump(results, f, indent=4)
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def main():
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run_examples()
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if __name__ == '__main__':
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main()
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[
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[
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422,
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"act(p(MGI:Lpl), ma(cat)) rateLimitingStepOf path(SDIS:\"VLDL biosynthesis\")",
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{
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"validation": {
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"expression": "act(p(MGI:Lpl), ma(cat)) rateLimitingStepOf path(SDIS:\"VLDL biosynthesis\")",
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"valid_syntax": true,
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"valid_semantics": false,
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"message": "Term: path(SDIS:\"VLDL biosynthesis\")\n Term did not match function signature: pathology(E:pathology)pathology\n\n",
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"warnings": [],
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"term_signatures": [
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{
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"term": "act(p(MGI:Lpl), ma(cat))",
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"valid": true,
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"valid_signatures": [
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"Term matched function signature: activity(F:abundance, F:molecularActivity)activity",
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"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
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"Term matched function signature: molecularActivity(E:activity)molecularActivity",
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"Term matched function signature: molecularActivity(Any)molecularActivity"
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],
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"invalid_signatures": [
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"Term did not match function signature: activity(F:abundance)activity",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
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"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
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]
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},
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{
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"term": "p(MGI:Lpl)",
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"valid": true,
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"valid_signatures": [
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"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
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],
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"invalid_signatures": [
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
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"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
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]
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},
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{
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"term": "ma(cat)",
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"valid": true,
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"valid_signatures": [
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"Term matched function signature: molecularActivity(E:activity)molecularActivity",
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"Term matched function signature: molecularActivity(Any)molecularActivity"
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],
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"invalid_signatures": []
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},
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{
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"term": "path(SDIS:\"VLDL biosynthesis\")",
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"valid": false,
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"valid_signatures": [],
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"invalid_signatures": [
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"Term did not match function signature: pathology(E:pathology)pathology"
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]
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}
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]
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}
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}
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],
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[
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422,
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"bp(GOBP:\"response to endoplasmic reticulum\") increases a(CHEBI:\"calcium(2+)\", loc(GOCC:\"endoplasmic reticulum\"))",
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{
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"validation": {
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"expression": "bp(GOBP:\"response to endoplasmic reticulum\") increases a(CHEBI:\"calcium(2+)\", loc(GOCC:\"endoplasmic reticulum\"))",
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"valid_syntax": true,
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"valid_semantics": false,
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"message": "Term: bp(GOBP:\"response to endoplasmic reticulum\")\n Term did not match function signature: biologicalProcess(E:biologicalProcess)biologicalProcess\n\nTerm: a(CHEBI:\"calcium(2+)\", loc(GOCC:\"endoplasmic reticulum\"))\n Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance\n Term did not match function signature: abundance(E:abundance)abundance\n\nTerm: loc(GOCC:\"endoplasmic reticulum\")\n\n",
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"warnings": [],
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"term_signatures": [
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{
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"term": "bp(GOBP:\"response to endoplasmic reticulum\")",
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"valid": false,
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"valid_signatures": [],
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"invalid_signatures": [
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"Term did not match function signature: biologicalProcess(E:biologicalProcess)biologicalProcess"
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]
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},
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{
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"term": "a(CHEBI:\"calcium(2+)\", loc(GOCC:\"endoplasmic reticulum\"))",
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"valid": true,
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"valid_signatures": [
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"Term matched function signature: abundance(E:abundance,F:location)abundance",
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"Term matched function signature: location(Any)location",
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"Term matched function signature: location(E:location)location"
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],
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"invalid_signatures": [
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"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
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"Term did not match function signature: abundance(E:abundance)abundance"
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]
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},
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{
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"term": "loc(GOCC:\"endoplasmic reticulum\")",
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"valid": true,
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"valid_signatures": [
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"Term matched function signature: location(Any)location",
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"Term matched function signature: location(E:location)location"
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],
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"invalid_signatures": []
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}
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]
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}
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}
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],
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[
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"g(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\")) association bp(GOBP:\"wound healing\")",
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{
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"validation": {
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"expression": "g(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\")) association bp(GOBP:\"wound healing\")",
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"valid_syntax": true,
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"valid_semantics": false,
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"message": "Term: g(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\"))\n Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance\n Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance\n Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance\n Term did not match function signature: geneAbundance(F:fusion)geneAbundance\n\nTerm: var(\"c.1521_1523delCTT\")\n\nTerm: bp(GOBP:\"wound healing\")\n\n",
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"warnings": [],
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"term_signatures": [
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{
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"term": "g(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\"))",
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"valid": false,
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"valid_signatures": [
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"Term matched function signature: variant(E:hgvsVariantDescription)variant"
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],
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"invalid_signatures": [
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"Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance",
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"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
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"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
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"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
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]
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},
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{
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"term": "var(\"c.1521_1523delCTT\")",
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"valid": true,
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"valid_signatures": [
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"Term matched function signature: variant(E:hgvsVariantDescription)variant"
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],
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"invalid_signatures": []
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},
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{
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"term": "bp(GOBP:\"wound healing\")",
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"valid": true,
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"valid_signatures": [
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"Term matched function signature: biologicalProcess(E:biologicalProcess)biologicalProcess"
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],
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"invalid_signatures": []
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}
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]
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}
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}
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],
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[
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422,
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"p(REF:\"NP_000483.3\", var(\"p.Phe508del\")) increases act(p(SFAM:\"SREBF Family\"), ma(tscript))",
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{
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"validation": {
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"expression": "p(REF:\"NP_000483.3\", var(\"p.Phe508del\")) increases act(p(SFAM:\"SREBF Family\"), ma(tscript))",
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"valid_syntax": true,
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"valid_semantics": false,
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"message": "Term: p(REF:\"NP_000483.3\", var(\"p.Phe508del\"))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: var(\"p.Phe508del\")\n\nTerm: act(p(SFAM:\"SREBF Family\"), ma(tscript))\n Term did not match function signature: activity(F:abundance)activity\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: p(SFAM:\"SREBF Family\")\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: ma(tscript)\n\n",
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"warnings": [],
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"term_signatures": [
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{
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"term": "p(REF:\"NP_000483.3\", var(\"p.Phe508del\"))",
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"valid": false,
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"valid_signatures": [
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"Term matched function signature: variant(E:hgvsVariantDescription)variant"
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],
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"invalid_signatures": [
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
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"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
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]
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},
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{
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"term": "var(\"p.Phe508del\")",
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"valid": true,
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"valid_signatures": [
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"Term matched function signature: variant(E:hgvsVariantDescription)variant"
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],
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"invalid_signatures": []
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},
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{
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"term": "act(p(SFAM:\"SREBF Family\"), ma(tscript))",
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"valid": true,
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"valid_signatures": [
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"Term matched function signature: activity(F:abundance, F:molecularActivity)activity",
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"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
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"Term matched function signature: molecularActivity(E:activity)molecularActivity",
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"Term matched function signature: molecularActivity(Any)molecularActivity"
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],
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|
+
"invalid_signatures": [
|
|
199
|
+
"Term did not match function signature: activity(F:abundance)activity",
|
|
200
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
201
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
202
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
203
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
204
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
205
|
+
]
|
|
206
|
+
},
|
|
207
|
+
{
|
|
208
|
+
"term": "p(SFAM:\"SREBF Family\")",
|
|
209
|
+
"valid": true,
|
|
210
|
+
"valid_signatures": [
|
|
211
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
|
|
212
|
+
],
|
|
213
|
+
"invalid_signatures": [
|
|
214
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
215
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
216
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
217
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
218
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
219
|
+
]
|
|
220
|
+
},
|
|
221
|
+
{
|
|
222
|
+
"term": "ma(tscript)",
|
|
223
|
+
"valid": true,
|
|
224
|
+
"valid_signatures": [
|
|
225
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
226
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
227
|
+
],
|
|
228
|
+
"invalid_signatures": []
|
|
229
|
+
}
|
|
230
|
+
]
|
|
231
|
+
}
|
|
232
|
+
}
|
|
233
|
+
],
|
|
234
|
+
[
|
|
235
|
+
422,
|
|
236
|
+
"p(HGNC:MAPK1, pmod(Ph, Thr, 185), pmod(Ph, Tyr, 187))",
|
|
237
|
+
{
|
|
238
|
+
"validation": {
|
|
239
|
+
"expression": "p(HGNC:MAPK1, pmod(Ph, Thr, 185), pmod(Ph, Tyr, 187))",
|
|
240
|
+
"valid_syntax": true,
|
|
241
|
+
"valid_semantics": false,
|
|
242
|
+
"message": "Term: p(HGNC:MAPK1, pmod(Ph, Thr, 185), pmod(Ph, Tyr, 187))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\nTerm: pmod(Ph, Thr, 185)\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\nTerm: pmod(Ph, Tyr, 187)\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\n",
|
|
243
|
+
"warnings": [],
|
|
244
|
+
"term_signatures": [
|
|
245
|
+
{
|
|
246
|
+
"term": "p(HGNC:MAPK1, pmod(Ph, Thr, 185), pmod(Ph, Tyr, 187))",
|
|
247
|
+
"valid": false,
|
|
248
|
+
"valid_signatures": [
|
|
249
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification",
|
|
250
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
251
|
+
],
|
|
252
|
+
"invalid_signatures": [
|
|
253
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
254
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
255
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
256
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
257
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
258
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
259
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
260
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification",
|
|
261
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
262
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
263
|
+
]
|
|
264
|
+
},
|
|
265
|
+
{
|
|
266
|
+
"term": "pmod(Ph, Thr, 185)",
|
|
267
|
+
"valid": true,
|
|
268
|
+
"valid_signatures": [
|
|
269
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
270
|
+
],
|
|
271
|
+
"invalid_signatures": [
|
|
272
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
273
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
274
|
+
]
|
|
275
|
+
},
|
|
276
|
+
{
|
|
277
|
+
"term": "pmod(Ph, Tyr, 187)",
|
|
278
|
+
"valid": true,
|
|
279
|
+
"valid_signatures": [
|
|
280
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
281
|
+
],
|
|
282
|
+
"invalid_signatures": [
|
|
283
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
284
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
285
|
+
]
|
|
286
|
+
}
|
|
287
|
+
]
|
|
288
|
+
}
|
|
289
|
+
}
|
|
290
|
+
],
|
|
291
|
+
[
|
|
292
|
+
422,
|
|
293
|
+
"p(REF:\"NP_000483.3\", var(\"p.Gly576Ala\"))",
|
|
294
|
+
{
|
|
295
|
+
"validation": {
|
|
296
|
+
"expression": "p(REF:\"NP_000483.3\", var(\"p.Gly576Ala\"))",
|
|
297
|
+
"valid_syntax": true,
|
|
298
|
+
"valid_semantics": false,
|
|
299
|
+
"message": "Term: p(REF:\"NP_000483.3\", var(\"p.Gly576Ala\"))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: var(\"p.Gly576Ala\")\n\n",
|
|
300
|
+
"warnings": [],
|
|
301
|
+
"term_signatures": [
|
|
302
|
+
{
|
|
303
|
+
"term": "p(REF:\"NP_000483.3\", var(\"p.Gly576Ala\"))",
|
|
304
|
+
"valid": false,
|
|
305
|
+
"valid_signatures": [
|
|
306
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
307
|
+
],
|
|
308
|
+
"invalid_signatures": [
|
|
309
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
310
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
311
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
312
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
313
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
314
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
315
|
+
]
|
|
316
|
+
},
|
|
317
|
+
{
|
|
318
|
+
"term": "var(\"p.Gly576Ala\")",
|
|
319
|
+
"valid": true,
|
|
320
|
+
"valid_signatures": [
|
|
321
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
322
|
+
],
|
|
323
|
+
"invalid_signatures": []
|
|
324
|
+
}
|
|
325
|
+
]
|
|
326
|
+
}
|
|
327
|
+
}
|
|
328
|
+
],
|
|
329
|
+
[
|
|
330
|
+
422,
|
|
331
|
+
"p(REF:\"NP_000483.3\", var(\"p.Phe508del\"))",
|
|
332
|
+
{
|
|
333
|
+
"validation": {
|
|
334
|
+
"expression": "p(REF:\"NP_000483.3\", var(\"p.Phe508del\"))",
|
|
335
|
+
"valid_syntax": true,
|
|
336
|
+
"valid_semantics": false,
|
|
337
|
+
"message": "Term: p(REF:\"NP_000483.3\", var(\"p.Phe508del\"))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: var(\"p.Phe508del\")\n\n",
|
|
338
|
+
"warnings": [],
|
|
339
|
+
"term_signatures": [
|
|
340
|
+
{
|
|
341
|
+
"term": "p(REF:\"NP_000483.3\", var(\"p.Phe508del\"))",
|
|
342
|
+
"valid": false,
|
|
343
|
+
"valid_signatures": [
|
|
344
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
345
|
+
],
|
|
346
|
+
"invalid_signatures": [
|
|
347
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
348
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
349
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
350
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
351
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
352
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
353
|
+
]
|
|
354
|
+
},
|
|
355
|
+
{
|
|
356
|
+
"term": "var(\"p.Phe508del\")",
|
|
357
|
+
"valid": true,
|
|
358
|
+
"valid_signatures": [
|
|
359
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
360
|
+
],
|
|
361
|
+
"invalid_signatures": []
|
|
362
|
+
}
|
|
363
|
+
]
|
|
364
|
+
}
|
|
365
|
+
}
|
|
366
|
+
],
|
|
367
|
+
[
|
|
368
|
+
422,
|
|
369
|
+
"p(REF:\"NP_000483.3\", var(\"p.Thr1220Lysfs\"))",
|
|
370
|
+
{
|
|
371
|
+
"validation": {
|
|
372
|
+
"expression": "p(REF:\"NP_000483.3\", var(\"p.Thr1220Lysfs\"))",
|
|
373
|
+
"valid_syntax": true,
|
|
374
|
+
"valid_semantics": false,
|
|
375
|
+
"message": "Term: p(REF:\"NP_000483.3\", var(\"p.Thr1220Lysfs\"))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: var(\"p.Thr1220Lysfs\")\n\n",
|
|
376
|
+
"warnings": [],
|
|
377
|
+
"term_signatures": [
|
|
378
|
+
{
|
|
379
|
+
"term": "p(REF:\"NP_000483.3\", var(\"p.Thr1220Lysfs\"))",
|
|
380
|
+
"valid": false,
|
|
381
|
+
"valid_signatures": [
|
|
382
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
383
|
+
],
|
|
384
|
+
"invalid_signatures": [
|
|
385
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
386
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
387
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
388
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
389
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
390
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
391
|
+
]
|
|
392
|
+
},
|
|
393
|
+
{
|
|
394
|
+
"term": "var(\"p.Thr1220Lysfs\")",
|
|
395
|
+
"valid": true,
|
|
396
|
+
"valid_signatures": [
|
|
397
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
398
|
+
],
|
|
399
|
+
"invalid_signatures": []
|
|
400
|
+
}
|
|
401
|
+
]
|
|
402
|
+
}
|
|
403
|
+
}
|
|
404
|
+
],
|
|
405
|
+
[
|
|
406
|
+
422,
|
|
407
|
+
"g(SNP:rs113993960, var(\"delCTT\"))",
|
|
408
|
+
{
|
|
409
|
+
"validation": {
|
|
410
|
+
"expression": "g(SNP:rs113993960, var(\"delCTT\"))",
|
|
411
|
+
"valid_syntax": true,
|
|
412
|
+
"valid_semantics": false,
|
|
413
|
+
"message": "Term: g(SNP:rs113993960, var(\"delCTT\"))\n Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance\n Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance\n Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance\n Term did not match function signature: geneAbundance(F:fusion)geneAbundance\n\nTerm: var(\"delCTT\")\n\n",
|
|
414
|
+
"warnings": [],
|
|
415
|
+
"term_signatures": [
|
|
416
|
+
{
|
|
417
|
+
"term": "g(SNP:rs113993960, var(\"delCTT\"))",
|
|
418
|
+
"valid": false,
|
|
419
|
+
"valid_signatures": [
|
|
420
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
421
|
+
],
|
|
422
|
+
"invalid_signatures": [
|
|
423
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance",
|
|
424
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
425
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
426
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
427
|
+
]
|
|
428
|
+
},
|
|
429
|
+
{
|
|
430
|
+
"term": "var(\"delCTT\")",
|
|
431
|
+
"valid": true,
|
|
432
|
+
"valid_signatures": [
|
|
433
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
434
|
+
],
|
|
435
|
+
"invalid_signatures": []
|
|
436
|
+
}
|
|
437
|
+
]
|
|
438
|
+
}
|
|
439
|
+
}
|
|
440
|
+
],
|
|
441
|
+
[
|
|
442
|
+
422,
|
|
443
|
+
"g(REF:\"NC_000007.13\", var(\"g.117199646_117199648delCTT\"))",
|
|
444
|
+
{
|
|
445
|
+
"validation": {
|
|
446
|
+
"expression": "g(REF:\"NC_000007.13\", var(\"g.117199646_117199648delCTT\"))",
|
|
447
|
+
"valid_syntax": true,
|
|
448
|
+
"valid_semantics": false,
|
|
449
|
+
"message": "Term: g(REF:\"NC_000007.13\", var(\"g.117199646_117199648delCTT\"))\n Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance\n Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance\n Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance\n Term did not match function signature: geneAbundance(F:fusion)geneAbundance\n\nTerm: var(\"g.117199646_117199648delCTT\")\n\n",
|
|
450
|
+
"warnings": [],
|
|
451
|
+
"term_signatures": [
|
|
452
|
+
{
|
|
453
|
+
"term": "g(REF:\"NC_000007.13\", var(\"g.117199646_117199648delCTT\"))",
|
|
454
|
+
"valid": false,
|
|
455
|
+
"valid_signatures": [
|
|
456
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
457
|
+
],
|
|
458
|
+
"invalid_signatures": [
|
|
459
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance",
|
|
460
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
461
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
462
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
463
|
+
]
|
|
464
|
+
},
|
|
465
|
+
{
|
|
466
|
+
"term": "var(\"g.117199646_117199648delCTT\")",
|
|
467
|
+
"valid": true,
|
|
468
|
+
"valid_signatures": [
|
|
469
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
470
|
+
],
|
|
471
|
+
"invalid_signatures": []
|
|
472
|
+
}
|
|
473
|
+
]
|
|
474
|
+
}
|
|
475
|
+
}
|
|
476
|
+
],
|
|
477
|
+
[
|
|
478
|
+
422,
|
|
479
|
+
"g(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\"))",
|
|
480
|
+
{
|
|
481
|
+
"validation": {
|
|
482
|
+
"expression": "g(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\"))",
|
|
483
|
+
"valid_syntax": true,
|
|
484
|
+
"valid_semantics": false,
|
|
485
|
+
"message": "Term: g(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\"))\n Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance\n Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance\n Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance\n Term did not match function signature: geneAbundance(F:fusion)geneAbundance\n\nTerm: var(\"c.1521_1523delCTT\")\n\n",
|
|
486
|
+
"warnings": [],
|
|
487
|
+
"term_signatures": [
|
|
488
|
+
{
|
|
489
|
+
"term": "g(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\"))",
|
|
490
|
+
"valid": false,
|
|
491
|
+
"valid_signatures": [
|
|
492
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
493
|
+
],
|
|
494
|
+
"invalid_signatures": [
|
|
495
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance",
|
|
496
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
497
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
498
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
499
|
+
]
|
|
500
|
+
},
|
|
501
|
+
{
|
|
502
|
+
"term": "var(\"c.1521_1523delCTT\")",
|
|
503
|
+
"valid": true,
|
|
504
|
+
"valid_signatures": [
|
|
505
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
506
|
+
],
|
|
507
|
+
"invalid_signatures": []
|
|
508
|
+
}
|
|
509
|
+
]
|
|
510
|
+
}
|
|
511
|
+
}
|
|
512
|
+
],
|
|
513
|
+
[
|
|
514
|
+
422,
|
|
515
|
+
"r(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\"))",
|
|
516
|
+
{
|
|
517
|
+
"validation": {
|
|
518
|
+
"expression": "r(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\"))",
|
|
519
|
+
"valid_syntax": true,
|
|
520
|
+
"valid_semantics": false,
|
|
521
|
+
"message": "Term: r(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\"))\n Term did not match function signature: rnaAbundance(E:rnaAbundance,F:location)geneAbundance\n Term did not match function signature: rnaAbundance(E:rnaAbundance,F:variant)geneAbundance\n Term did not match function signature: rnaAbundance(F:fusion)geneAbundance\n Term did not match function signature: rnaAbundance(E:rnaAbundance)geneAbundance\n\nTerm: var(\"c.1521_1523delCTT\")\n\n",
|
|
522
|
+
"warnings": [],
|
|
523
|
+
"term_signatures": [
|
|
524
|
+
{
|
|
525
|
+
"term": "r(REF:\"NM_000492.3\", var(\"c.1521_1523delCTT\"))",
|
|
526
|
+
"valid": false,
|
|
527
|
+
"valid_signatures": [
|
|
528
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
529
|
+
],
|
|
530
|
+
"invalid_signatures": [
|
|
531
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance,F:location)geneAbundance",
|
|
532
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance,F:variant)geneAbundance",
|
|
533
|
+
"Term did not match function signature: rnaAbundance(F:fusion)geneAbundance",
|
|
534
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance)geneAbundance"
|
|
535
|
+
]
|
|
536
|
+
},
|
|
537
|
+
{
|
|
538
|
+
"term": "var(\"c.1521_1523delCTT\")",
|
|
539
|
+
"valid": true,
|
|
540
|
+
"valid_signatures": [
|
|
541
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
542
|
+
],
|
|
543
|
+
"invalid_signatures": []
|
|
544
|
+
}
|
|
545
|
+
]
|
|
546
|
+
}
|
|
547
|
+
}
|
|
548
|
+
],
|
|
549
|
+
[
|
|
550
|
+
422,
|
|
551
|
+
"r(REF:\"NM_000492.3\", var(\"r.1653_1655delcuu\"))",
|
|
552
|
+
{
|
|
553
|
+
"validation": {
|
|
554
|
+
"expression": "r(REF:\"NM_000492.3\", var(\"r.1653_1655delcuu\"))",
|
|
555
|
+
"valid_syntax": true,
|
|
556
|
+
"valid_semantics": false,
|
|
557
|
+
"message": "Term: r(REF:\"NM_000492.3\", var(\"r.1653_1655delcuu\"))\n Term did not match function signature: rnaAbundance(E:rnaAbundance,F:location)geneAbundance\n Term did not match function signature: rnaAbundance(E:rnaAbundance,F:variant)geneAbundance\n Term did not match function signature: rnaAbundance(F:fusion)geneAbundance\n Term did not match function signature: rnaAbundance(E:rnaAbundance)geneAbundance\n\nTerm: var(\"r.1653_1655delcuu\")\n\n",
|
|
558
|
+
"warnings": [],
|
|
559
|
+
"term_signatures": [
|
|
560
|
+
{
|
|
561
|
+
"term": "r(REF:\"NM_000492.3\", var(\"r.1653_1655delcuu\"))",
|
|
562
|
+
"valid": false,
|
|
563
|
+
"valid_signatures": [
|
|
564
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
565
|
+
],
|
|
566
|
+
"invalid_signatures": [
|
|
567
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance,F:location)geneAbundance",
|
|
568
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance,F:variant)geneAbundance",
|
|
569
|
+
"Term did not match function signature: rnaAbundance(F:fusion)geneAbundance",
|
|
570
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance)geneAbundance"
|
|
571
|
+
]
|
|
572
|
+
},
|
|
573
|
+
{
|
|
574
|
+
"term": "var(\"r.1653_1655delcuu\")",
|
|
575
|
+
"valid": true,
|
|
576
|
+
"valid_signatures": [
|
|
577
|
+
"Term matched function signature: variant(E:hgvsVariantDescription)variant"
|
|
578
|
+
],
|
|
579
|
+
"invalid_signatures": []
|
|
580
|
+
}
|
|
581
|
+
]
|
|
582
|
+
}
|
|
583
|
+
}
|
|
584
|
+
],
|
|
585
|
+
[
|
|
586
|
+
422,
|
|
587
|
+
"p(HGNC:YFG, frag(\"5_20\"))",
|
|
588
|
+
{
|
|
589
|
+
"validation": {
|
|
590
|
+
"expression": "p(HGNC:YFG, frag(\"5_20\"))",
|
|
591
|
+
"valid_syntax": true,
|
|
592
|
+
"valid_semantics": false,
|
|
593
|
+
"message": "Term: p(HGNC:YFG, frag(\"5_20\"))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance\n Term did not match function signature: fragment(E:*,E:*)abundance\n\nTerm: frag(\"5_20\")\n Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance\n Term did not match function signature: fragment(E:*,E:*)abundance\n\n",
|
|
594
|
+
"warnings": [],
|
|
595
|
+
"term_signatures": [
|
|
596
|
+
{
|
|
597
|
+
"term": "p(HGNC:YFG, frag(\"5_20\"))",
|
|
598
|
+
"valid": false,
|
|
599
|
+
"valid_signatures": [
|
|
600
|
+
"Term matched function signature: fragment(E:aminoAcidRange)abundance",
|
|
601
|
+
"Term matched function signature: fragment(E:*)abundance"
|
|
602
|
+
],
|
|
603
|
+
"invalid_signatures": [
|
|
604
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
605
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
606
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
607
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
608
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
609
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
610
|
+
"Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance",
|
|
611
|
+
"Term did not match function signature: fragment(E:*,E:*)abundance"
|
|
612
|
+
]
|
|
613
|
+
},
|
|
614
|
+
{
|
|
615
|
+
"term": "frag(\"5_20\")",
|
|
616
|
+
"valid": true,
|
|
617
|
+
"valid_signatures": [
|
|
618
|
+
"Term matched function signature: fragment(E:aminoAcidRange)abundance",
|
|
619
|
+
"Term matched function signature: fragment(E:*)abundance"
|
|
620
|
+
],
|
|
621
|
+
"invalid_signatures": [
|
|
622
|
+
"Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance",
|
|
623
|
+
"Term did not match function signature: fragment(E:*,E:*)abundance"
|
|
624
|
+
]
|
|
625
|
+
}
|
|
626
|
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]
|
|
627
|
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}
|
|
628
|
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}
|
|
629
|
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],
|
|
630
|
+
[
|
|
631
|
+
422,
|
|
632
|
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"p(HGNC:YFG, frag(\"1_?\"))",
|
|
633
|
+
{
|
|
634
|
+
"validation": {
|
|
635
|
+
"expression": "p(HGNC:YFG, frag(\"1_?\"))",
|
|
636
|
+
"valid_syntax": true,
|
|
637
|
+
"valid_semantics": false,
|
|
638
|
+
"message": "Term: p(HGNC:YFG, frag(\"1_?\"))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance\n Term did not match function signature: fragment(E:*,E:*)abundance\n\nTerm: frag(\"1_?\")\n Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance\n Term did not match function signature: fragment(E:*,E:*)abundance\n\n",
|
|
639
|
+
"warnings": [],
|
|
640
|
+
"term_signatures": [
|
|
641
|
+
{
|
|
642
|
+
"term": "p(HGNC:YFG, frag(\"1_?\"))",
|
|
643
|
+
"valid": false,
|
|
644
|
+
"valid_signatures": [
|
|
645
|
+
"Term matched function signature: fragment(E:aminoAcidRange)abundance",
|
|
646
|
+
"Term matched function signature: fragment(E:*)abundance"
|
|
647
|
+
],
|
|
648
|
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"invalid_signatures": [
|
|
649
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
650
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
651
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
652
|
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"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
653
|
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"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
654
|
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"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
655
|
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"Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance",
|
|
656
|
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"Term did not match function signature: fragment(E:*,E:*)abundance"
|
|
657
|
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]
|
|
658
|
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},
|
|
659
|
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{
|
|
660
|
+
"term": "frag(\"1_?\")",
|
|
661
|
+
"valid": true,
|
|
662
|
+
"valid_signatures": [
|
|
663
|
+
"Term matched function signature: fragment(E:aminoAcidRange)abundance",
|
|
664
|
+
"Term matched function signature: fragment(E:*)abundance"
|
|
665
|
+
],
|
|
666
|
+
"invalid_signatures": [
|
|
667
|
+
"Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance",
|
|
668
|
+
"Term did not match function signature: fragment(E:*,E:*)abundance"
|
|
669
|
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]
|
|
670
|
+
}
|
|
671
|
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]
|
|
672
|
+
}
|
|
673
|
+
}
|
|
674
|
+
],
|
|
675
|
+
[
|
|
676
|
+
422,
|
|
677
|
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"p(HGNC:YFG, frag(\"?_*\"))",
|
|
678
|
+
{
|
|
679
|
+
"validation": {
|
|
680
|
+
"expression": "p(HGNC:YFG, frag(\"?_*\"))",
|
|
681
|
+
"valid_syntax": true,
|
|
682
|
+
"valid_semantics": false,
|
|
683
|
+
"message": "Term: p(HGNC:YFG, frag(\"?_*\"))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance\n Term did not match function signature: fragment(E:*,E:*)abundance\n\nTerm: frag(\"?_*\")\n Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance\n Term did not match function signature: fragment(E:*,E:*)abundance\n\n",
|
|
684
|
+
"warnings": [],
|
|
685
|
+
"term_signatures": [
|
|
686
|
+
{
|
|
687
|
+
"term": "p(HGNC:YFG, frag(\"?_*\"))",
|
|
688
|
+
"valid": false,
|
|
689
|
+
"valid_signatures": [
|
|
690
|
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"Term matched function signature: fragment(E:aminoAcidRange)abundance",
|
|
691
|
+
"Term matched function signature: fragment(E:*)abundance"
|
|
692
|
+
],
|
|
693
|
+
"invalid_signatures": [
|
|
694
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
695
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
696
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
697
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
698
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
699
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
700
|
+
"Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance",
|
|
701
|
+
"Term did not match function signature: fragment(E:*,E:*)abundance"
|
|
702
|
+
]
|
|
703
|
+
},
|
|
704
|
+
{
|
|
705
|
+
"term": "frag(\"?_*\")",
|
|
706
|
+
"valid": true,
|
|
707
|
+
"valid_signatures": [
|
|
708
|
+
"Term matched function signature: fragment(E:aminoAcidRange)abundance",
|
|
709
|
+
"Term matched function signature: fragment(E:*)abundance"
|
|
710
|
+
],
|
|
711
|
+
"invalid_signatures": [
|
|
712
|
+
"Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance",
|
|
713
|
+
"Term did not match function signature: fragment(E:*,E:*)abundance"
|
|
714
|
+
]
|
|
715
|
+
}
|
|
716
|
+
]
|
|
717
|
+
}
|
|
718
|
+
}
|
|
719
|
+
],
|
|
720
|
+
[
|
|
721
|
+
422,
|
|
722
|
+
"p(HGNC:YFG, frag(\"?\"))",
|
|
723
|
+
{
|
|
724
|
+
"validation": {
|
|
725
|
+
"expression": "p(HGNC:YFG, frag(\"?\"))",
|
|
726
|
+
"valid_syntax": true,
|
|
727
|
+
"valid_semantics": false,
|
|
728
|
+
"message": "Term: p(HGNC:YFG, frag(\"?\"))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance\n Term did not match function signature: fragment(E:*,E:*)abundance\n\nTerm: frag(\"?\")\n Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance\n Term did not match function signature: fragment(E:*,E:*)abundance\n\n",
|
|
729
|
+
"warnings": [],
|
|
730
|
+
"term_signatures": [
|
|
731
|
+
{
|
|
732
|
+
"term": "p(HGNC:YFG, frag(\"?\"))",
|
|
733
|
+
"valid": false,
|
|
734
|
+
"valid_signatures": [
|
|
735
|
+
"Term matched function signature: fragment(E:aminoAcidRange)abundance",
|
|
736
|
+
"Term matched function signature: fragment(E:*)abundance"
|
|
737
|
+
],
|
|
738
|
+
"invalid_signatures": [
|
|
739
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
740
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
741
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
742
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
743
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
744
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
745
|
+
"Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance",
|
|
746
|
+
"Term did not match function signature: fragment(E:*,E:*)abundance"
|
|
747
|
+
]
|
|
748
|
+
},
|
|
749
|
+
{
|
|
750
|
+
"term": "frag(\"?\")",
|
|
751
|
+
"valid": true,
|
|
752
|
+
"valid_signatures": [
|
|
753
|
+
"Term matched function signature: fragment(E:aminoAcidRange)abundance",
|
|
754
|
+
"Term matched function signature: fragment(E:*)abundance"
|
|
755
|
+
],
|
|
756
|
+
"invalid_signatures": [
|
|
757
|
+
"Term did not match function signature: fragment(E:aminoAcidRange,E:*)abundance",
|
|
758
|
+
"Term did not match function signature: fragment(E:*,E:*)abundance"
|
|
759
|
+
]
|
|
760
|
+
}
|
|
761
|
+
]
|
|
762
|
+
}
|
|
763
|
+
}
|
|
764
|
+
],
|
|
765
|
+
[
|
|
766
|
+
422,
|
|
767
|
+
"p(HGNC:YFG, frag(\"?\", \"55kD\"))",
|
|
768
|
+
{
|
|
769
|
+
"validation": {
|
|
770
|
+
"expression": "p(HGNC:YFG, frag(\"?\", \"55kD\"))",
|
|
771
|
+
"valid_syntax": true,
|
|
772
|
+
"valid_semantics": false,
|
|
773
|
+
"message": "Term: p(HGNC:YFG, frag(\"?\", \"55kD\"))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: fragment(E:aminoAcidRange)abundance\n Term did not match function signature: fragment(E:*)abundance\n\nTerm: frag(\"?\", \"55kD\")\n Term did not match function signature: fragment(E:aminoAcidRange)abundance\n Term did not match function signature: fragment(E:*)abundance\n\n",
|
|
774
|
+
"warnings": [],
|
|
775
|
+
"term_signatures": [
|
|
776
|
+
{
|
|
777
|
+
"term": "p(HGNC:YFG, frag(\"?\", \"55kD\"))",
|
|
778
|
+
"valid": false,
|
|
779
|
+
"valid_signatures": [
|
|
780
|
+
"Term matched function signature: fragment(E:aminoAcidRange,E:*)abundance",
|
|
781
|
+
"Term matched function signature: fragment(E:*,E:*)abundance"
|
|
782
|
+
],
|
|
783
|
+
"invalid_signatures": [
|
|
784
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
785
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
786
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
787
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
788
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
789
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
790
|
+
"Term did not match function signature: fragment(E:aminoAcidRange)abundance",
|
|
791
|
+
"Term did not match function signature: fragment(E:*)abundance"
|
|
792
|
+
]
|
|
793
|
+
},
|
|
794
|
+
{
|
|
795
|
+
"term": "frag(\"?\", \"55kD\")",
|
|
796
|
+
"valid": true,
|
|
797
|
+
"valid_signatures": [
|
|
798
|
+
"Term matched function signature: fragment(E:aminoAcidRange,E:*)abundance",
|
|
799
|
+
"Term matched function signature: fragment(E:*,E:*)abundance"
|
|
800
|
+
],
|
|
801
|
+
"invalid_signatures": [
|
|
802
|
+
"Term did not match function signature: fragment(E:aminoAcidRange)abundance",
|
|
803
|
+
"Term did not match function signature: fragment(E:*)abundance"
|
|
804
|
+
]
|
|
805
|
+
}
|
|
806
|
+
]
|
|
807
|
+
}
|
|
808
|
+
}
|
|
809
|
+
],
|
|
810
|
+
[
|
|
811
|
+
422,
|
|
812
|
+
"pathology(MESHD:adenocarcinoma)",
|
|
813
|
+
{
|
|
814
|
+
"validation": {
|
|
815
|
+
"expression": "pathology(MESHD:adenocarcinoma)",
|
|
816
|
+
"valid_syntax": true,
|
|
817
|
+
"valid_semantics": false,
|
|
818
|
+
"message": "Term: pathology(MESHD:adenocarcinoma)\n Term did not match function signature: pathology(E:pathology)pathology\n\n",
|
|
819
|
+
"warnings": [],
|
|
820
|
+
"term_signatures": [
|
|
821
|
+
{
|
|
822
|
+
"term": "pathology(MESHD:adenocarcinoma)",
|
|
823
|
+
"valid": false,
|
|
824
|
+
"valid_signatures": [],
|
|
825
|
+
"invalid_signatures": [
|
|
826
|
+
"Term did not match function signature: pathology(E:pathology)pathology"
|
|
827
|
+
]
|
|
828
|
+
}
|
|
829
|
+
]
|
|
830
|
+
}
|
|
831
|
+
}
|
|
832
|
+
],
|
|
833
|
+
[
|
|
834
|
+
422,
|
|
835
|
+
"p(PFH:\"Hedgehog Family\") =| act(p(HGNC:PTCH1))",
|
|
836
|
+
{
|
|
837
|
+
"validation": {
|
|
838
|
+
"expression": "p(PFH:\"Hedgehog Family\") =| act(p(HGNC:PTCH1))",
|
|
839
|
+
"valid_syntax": true,
|
|
840
|
+
"valid_semantics": false,
|
|
841
|
+
"message": "Term: p(PFH:\"Hedgehog Family\")\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: act(p(HGNC:PTCH1))\n Term did not match function signature: activity(F:abundance, F:molecularActivity)activity\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: p(HGNC:PTCH1)\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\n",
|
|
842
|
+
"warnings": [],
|
|
843
|
+
"term_signatures": [
|
|
844
|
+
{
|
|
845
|
+
"term": "p(PFH:\"Hedgehog Family\")",
|
|
846
|
+
"valid": false,
|
|
847
|
+
"valid_signatures": [],
|
|
848
|
+
"invalid_signatures": [
|
|
849
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
850
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
851
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
852
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
853
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
854
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
855
|
+
]
|
|
856
|
+
},
|
|
857
|
+
{
|
|
858
|
+
"term": "act(p(HGNC:PTCH1))",
|
|
859
|
+
"valid": true,
|
|
860
|
+
"valid_signatures": [
|
|
861
|
+
"Term matched function signature: activity(F:abundance)activity",
|
|
862
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
|
|
863
|
+
],
|
|
864
|
+
"invalid_signatures": [
|
|
865
|
+
"Term did not match function signature: activity(F:abundance, F:molecularActivity)activity",
|
|
866
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
867
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
868
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
869
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
870
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
871
|
+
]
|
|
872
|
+
},
|
|
873
|
+
{
|
|
874
|
+
"term": "p(HGNC:PTCH1)",
|
|
875
|
+
"valid": true,
|
|
876
|
+
"valid_signatures": [
|
|
877
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
|
|
878
|
+
],
|
|
879
|
+
"invalid_signatures": [
|
|
880
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
881
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
882
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
883
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
884
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
885
|
+
]
|
|
886
|
+
}
|
|
887
|
+
]
|
|
888
|
+
}
|
|
889
|
+
}
|
|
890
|
+
],
|
|
891
|
+
[
|
|
892
|
+
422,
|
|
893
|
+
"g(HGNC:AKT1) orthologous g(MGI:AKT1)",
|
|
894
|
+
{
|
|
895
|
+
"validation": {
|
|
896
|
+
"expression": "g(HGNC:AKT1) orthologous g(MGI:AKT1)",
|
|
897
|
+
"valid_syntax": true,
|
|
898
|
+
"valid_semantics": false,
|
|
899
|
+
"message": "Term: g(MGI:AKT1)\n Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance\n Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance\n Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance\n Term did not match function signature: geneAbundance(F:fusion)geneAbundance\n\n",
|
|
900
|
+
"warnings": [],
|
|
901
|
+
"term_signatures": [
|
|
902
|
+
{
|
|
903
|
+
"term": "g(HGNC:AKT1)",
|
|
904
|
+
"valid": true,
|
|
905
|
+
"valid_signatures": [
|
|
906
|
+
"Term matched function signature: geneAbundance(E:geneAbundance)geneAbundance"
|
|
907
|
+
],
|
|
908
|
+
"invalid_signatures": [
|
|
909
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
910
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
911
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
912
|
+
]
|
|
913
|
+
},
|
|
914
|
+
{
|
|
915
|
+
"term": "g(MGI:AKT1)",
|
|
916
|
+
"valid": false,
|
|
917
|
+
"valid_signatures": [],
|
|
918
|
+
"invalid_signatures": [
|
|
919
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance",
|
|
920
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
921
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
922
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
923
|
+
]
|
|
924
|
+
}
|
|
925
|
+
]
|
|
926
|
+
}
|
|
927
|
+
}
|
|
928
|
+
],
|
|
929
|
+
[
|
|
930
|
+
422,
|
|
931
|
+
"pathology(MESH:Psoriasis) isA pathology(MESH:\"Skin Diseases\")",
|
|
932
|
+
{
|
|
933
|
+
"validation": {
|
|
934
|
+
"expression": "pathology(MESH:Psoriasis) isA pathology(MESH:\"Skin Diseases\")",
|
|
935
|
+
"valid_syntax": true,
|
|
936
|
+
"valid_semantics": false,
|
|
937
|
+
"message": "Term: pathology(MESH:Psoriasis)\n Term did not match function signature: pathology(E:pathology)pathology\n\nTerm: pathology(MESH:\"Skin Diseases\")\n Term did not match function signature: pathology(E:pathology)pathology\n\n",
|
|
938
|
+
"warnings": [],
|
|
939
|
+
"term_signatures": [
|
|
940
|
+
{
|
|
941
|
+
"term": "pathology(MESH:Psoriasis)",
|
|
942
|
+
"valid": false,
|
|
943
|
+
"valid_signatures": [],
|
|
944
|
+
"invalid_signatures": [
|
|
945
|
+
"Term did not match function signature: pathology(E:pathology)pathology"
|
|
946
|
+
]
|
|
947
|
+
},
|
|
948
|
+
{
|
|
949
|
+
"term": "pathology(MESH:\"Skin Diseases\")",
|
|
950
|
+
"valid": false,
|
|
951
|
+
"valid_signatures": [],
|
|
952
|
+
"invalid_signatures": [
|
|
953
|
+
"Term did not match function signature: pathology(E:pathology)pathology"
|
|
954
|
+
]
|
|
955
|
+
}
|
|
956
|
+
]
|
|
957
|
+
}
|
|
958
|
+
}
|
|
959
|
+
],
|
|
960
|
+
[
|
|
961
|
+
422,
|
|
962
|
+
"geneAbundance(MGI:Mir21)",
|
|
963
|
+
{
|
|
964
|
+
"validation": {
|
|
965
|
+
"expression": "geneAbundance(MGI:Mir21)",
|
|
966
|
+
"valid_syntax": true,
|
|
967
|
+
"valid_semantics": false,
|
|
968
|
+
"message": "Term: geneAbundance(MGI:Mir21)\n Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance\n Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance\n Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance\n Term did not match function signature: geneAbundance(F:fusion)geneAbundance\n\n",
|
|
969
|
+
"warnings": [],
|
|
970
|
+
"term_signatures": [
|
|
971
|
+
{
|
|
972
|
+
"term": "geneAbundance(MGI:Mir21)",
|
|
973
|
+
"valid": false,
|
|
974
|
+
"valid_signatures": [],
|
|
975
|
+
"invalid_signatures": [
|
|
976
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance",
|
|
977
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
978
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
979
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
980
|
+
]
|
|
981
|
+
}
|
|
982
|
+
]
|
|
983
|
+
}
|
|
984
|
+
}
|
|
985
|
+
],
|
|
986
|
+
[
|
|
987
|
+
422,
|
|
988
|
+
"rnaAbundance(MGI:Mir21)",
|
|
989
|
+
{
|
|
990
|
+
"validation": {
|
|
991
|
+
"expression": "rnaAbundance(MGI:Mir21)",
|
|
992
|
+
"valid_syntax": true,
|
|
993
|
+
"valid_semantics": false,
|
|
994
|
+
"message": "Term: rnaAbundance(MGI:Mir21)\n Term did not match function signature: rnaAbundance(E:rnaAbundance,F:location)geneAbundance\n Term did not match function signature: rnaAbundance(E:rnaAbundance,F:variant)geneAbundance\n Term did not match function signature: rnaAbundance(F:fusion)geneAbundance\n Term did not match function signature: rnaAbundance(E:rnaAbundance)geneAbundance\n\n",
|
|
995
|
+
"warnings": [],
|
|
996
|
+
"term_signatures": [
|
|
997
|
+
{
|
|
998
|
+
"term": "rnaAbundance(MGI:Mir21)",
|
|
999
|
+
"valid": false,
|
|
1000
|
+
"valid_signatures": [],
|
|
1001
|
+
"invalid_signatures": [
|
|
1002
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance,F:location)geneAbundance",
|
|
1003
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance,F:variant)geneAbundance",
|
|
1004
|
+
"Term did not match function signature: rnaAbundance(F:fusion)geneAbundance",
|
|
1005
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance)geneAbundance"
|
|
1006
|
+
]
|
|
1007
|
+
}
|
|
1008
|
+
]
|
|
1009
|
+
}
|
|
1010
|
+
}
|
|
1011
|
+
],
|
|
1012
|
+
[
|
|
1013
|
+
422,
|
|
1014
|
+
"microRNAAbundance(MGI:Mir21)",
|
|
1015
|
+
{
|
|
1016
|
+
"validation": {
|
|
1017
|
+
"expression": "microRNAAbundance(MGI:Mir21)",
|
|
1018
|
+
"valid_syntax": true,
|
|
1019
|
+
"valid_semantics": false,
|
|
1020
|
+
"message": "Term: microRNAAbundance(MGI:Mir21)\n Term did not match function signature: microRNAAbundance(E:microRNAAbundance,F:location)microRNAAbundance\n Term did not match function signature: microRNAAbundance(E:microRNAAbundance)microRNAAbundance\n Term did not match function signature: microRNAAbundance(E:microRNAAbundance,F:variant)microRNAAbundance\n\n",
|
|
1021
|
+
"warnings": [],
|
|
1022
|
+
"term_signatures": [
|
|
1023
|
+
{
|
|
1024
|
+
"term": "microRNAAbundance(MGI:Mir21)",
|
|
1025
|
+
"valid": false,
|
|
1026
|
+
"valid_signatures": [],
|
|
1027
|
+
"invalid_signatures": [
|
|
1028
|
+
"Term did not match function signature: microRNAAbundance(E:microRNAAbundance,F:location)microRNAAbundance",
|
|
1029
|
+
"Term did not match function signature: microRNAAbundance(E:microRNAAbundance)microRNAAbundance",
|
|
1030
|
+
"Term did not match function signature: microRNAAbundance(E:microRNAAbundance,F:variant)microRNAAbundance"
|
|
1031
|
+
]
|
|
1032
|
+
}
|
|
1033
|
+
]
|
|
1034
|
+
}
|
|
1035
|
+
}
|
|
1036
|
+
],
|
|
1037
|
+
[
|
|
1038
|
+
422,
|
|
1039
|
+
"g(MGI:Mir21)",
|
|
1040
|
+
{
|
|
1041
|
+
"validation": {
|
|
1042
|
+
"expression": "g(MGI:Mir21)",
|
|
1043
|
+
"valid_syntax": true,
|
|
1044
|
+
"valid_semantics": false,
|
|
1045
|
+
"message": "Term: g(MGI:Mir21)\n Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance\n Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance\n Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance\n Term did not match function signature: geneAbundance(F:fusion)geneAbundance\n\n",
|
|
1046
|
+
"warnings": [],
|
|
1047
|
+
"term_signatures": [
|
|
1048
|
+
{
|
|
1049
|
+
"term": "g(MGI:Mir21)",
|
|
1050
|
+
"valid": false,
|
|
1051
|
+
"valid_signatures": [],
|
|
1052
|
+
"invalid_signatures": [
|
|
1053
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance)geneAbundance",
|
|
1054
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
1055
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
1056
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
1057
|
+
]
|
|
1058
|
+
}
|
|
1059
|
+
]
|
|
1060
|
+
}
|
|
1061
|
+
}
|
|
1062
|
+
],
|
|
1063
|
+
[
|
|
1064
|
+
422,
|
|
1065
|
+
"r(MGI:Mir21)",
|
|
1066
|
+
{
|
|
1067
|
+
"validation": {
|
|
1068
|
+
"expression": "r(MGI:Mir21)",
|
|
1069
|
+
"valid_syntax": true,
|
|
1070
|
+
"valid_semantics": false,
|
|
1071
|
+
"message": "Term: r(MGI:Mir21)\n Term did not match function signature: rnaAbundance(E:rnaAbundance,F:location)geneAbundance\n Term did not match function signature: rnaAbundance(E:rnaAbundance,F:variant)geneAbundance\n Term did not match function signature: rnaAbundance(F:fusion)geneAbundance\n Term did not match function signature: rnaAbundance(E:rnaAbundance)geneAbundance\n\n",
|
|
1072
|
+
"warnings": [],
|
|
1073
|
+
"term_signatures": [
|
|
1074
|
+
{
|
|
1075
|
+
"term": "r(MGI:Mir21)",
|
|
1076
|
+
"valid": false,
|
|
1077
|
+
"valid_signatures": [],
|
|
1078
|
+
"invalid_signatures": [
|
|
1079
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance,F:location)geneAbundance",
|
|
1080
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance,F:variant)geneAbundance",
|
|
1081
|
+
"Term did not match function signature: rnaAbundance(F:fusion)geneAbundance",
|
|
1082
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance)geneAbundance"
|
|
1083
|
+
]
|
|
1084
|
+
}
|
|
1085
|
+
]
|
|
1086
|
+
}
|
|
1087
|
+
}
|
|
1088
|
+
],
|
|
1089
|
+
[
|
|
1090
|
+
422,
|
|
1091
|
+
"m(MGI:Mir21)",
|
|
1092
|
+
{
|
|
1093
|
+
"validation": {
|
|
1094
|
+
"expression": "m(MGI:Mir21)",
|
|
1095
|
+
"valid_syntax": true,
|
|
1096
|
+
"valid_semantics": false,
|
|
1097
|
+
"message": "Term: m(MGI:Mir21)\n Term did not match function signature: microRNAAbundance(E:microRNAAbundance,F:location)microRNAAbundance\n Term did not match function signature: microRNAAbundance(E:microRNAAbundance)microRNAAbundance\n Term did not match function signature: microRNAAbundance(E:microRNAAbundance,F:variant)microRNAAbundance\n\n",
|
|
1098
|
+
"warnings": [],
|
|
1099
|
+
"term_signatures": [
|
|
1100
|
+
{
|
|
1101
|
+
"term": "m(MGI:Mir21)",
|
|
1102
|
+
"valid": false,
|
|
1103
|
+
"valid_signatures": [],
|
|
1104
|
+
"invalid_signatures": [
|
|
1105
|
+
"Term did not match function signature: microRNAAbundance(E:microRNAAbundance,F:location)microRNAAbundance",
|
|
1106
|
+
"Term did not match function signature: microRNAAbundance(E:microRNAAbundance)microRNAAbundance",
|
|
1107
|
+
"Term did not match function signature: microRNAAbundance(E:microRNAAbundance,F:variant)microRNAAbundance"
|
|
1108
|
+
]
|
|
1109
|
+
}
|
|
1110
|
+
]
|
|
1111
|
+
}
|
|
1112
|
+
}
|
|
1113
|
+
],
|
|
1114
|
+
[
|
|
1115
|
+
422,
|
|
1116
|
+
"act(complex(NCH:\"ENaC Complex\"), ma(tport))",
|
|
1117
|
+
{
|
|
1118
|
+
"validation": {
|
|
1119
|
+
"expression": "act(complex(NCH:\"ENaC Complex\"), ma(tport))",
|
|
1120
|
+
"valid_syntax": true,
|
|
1121
|
+
"valid_semantics": false,
|
|
1122
|
+
"message": "Term: complex(NCH:\"ENaC Complex\")\n Term did not match function signature: complexAbundance(F:abundance...)complexAbundance\n Term did not match function signature: complexAbundance(E:abundance,F:location)complexAbundance\n Term did not match function signature: complexAbundance(F:abundance...,F:location)complexAbundance\n Term did not match function signature: complexAbundance(E:abundance)complexAbundance\n\nTerm: ma(tport)\n\n",
|
|
1123
|
+
"warnings": [],
|
|
1124
|
+
"term_signatures": [
|
|
1125
|
+
{
|
|
1126
|
+
"term": "act(complex(NCH:\"ENaC Complex\"), ma(tport))",
|
|
1127
|
+
"valid": true,
|
|
1128
|
+
"valid_signatures": [
|
|
1129
|
+
"Term matched function signature: activity(F:abundance, F:molecularActivity)activity",
|
|
1130
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
1131
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1132
|
+
],
|
|
1133
|
+
"invalid_signatures": [
|
|
1134
|
+
"Term did not match function signature: activity(F:abundance)activity",
|
|
1135
|
+
"Term did not match function signature: complexAbundance(F:abundance...)complexAbundance",
|
|
1136
|
+
"Term did not match function signature: complexAbundance(E:abundance,F:location)complexAbundance",
|
|
1137
|
+
"Term did not match function signature: complexAbundance(F:abundance...,F:location)complexAbundance",
|
|
1138
|
+
"Term did not match function signature: complexAbundance(E:abundance)complexAbundance"
|
|
1139
|
+
]
|
|
1140
|
+
},
|
|
1141
|
+
{
|
|
1142
|
+
"term": "complex(NCH:\"ENaC Complex\")",
|
|
1143
|
+
"valid": false,
|
|
1144
|
+
"valid_signatures": [],
|
|
1145
|
+
"invalid_signatures": [
|
|
1146
|
+
"Term did not match function signature: complexAbundance(F:abundance...)complexAbundance",
|
|
1147
|
+
"Term did not match function signature: complexAbundance(E:abundance,F:location)complexAbundance",
|
|
1148
|
+
"Term did not match function signature: complexAbundance(F:abundance...,F:location)complexAbundance",
|
|
1149
|
+
"Term did not match function signature: complexAbundance(E:abundance)complexAbundance"
|
|
1150
|
+
]
|
|
1151
|
+
},
|
|
1152
|
+
{
|
|
1153
|
+
"term": "ma(tport)",
|
|
1154
|
+
"valid": true,
|
|
1155
|
+
"valid_signatures": [
|
|
1156
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
1157
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1158
|
+
],
|
|
1159
|
+
"invalid_signatures": []
|
|
1160
|
+
}
|
|
1161
|
+
]
|
|
1162
|
+
}
|
|
1163
|
+
}
|
|
1164
|
+
],
|
|
1165
|
+
[
|
|
1166
|
+
422,
|
|
1167
|
+
"act(complex(NCH:\"ENaC Complex\"), ma(GOMF:\"transporter activity\"))",
|
|
1168
|
+
{
|
|
1169
|
+
"validation": {
|
|
1170
|
+
"expression": "act(complex(NCH:\"ENaC Complex\"), ma(GOMF:\"transporter activity\"))",
|
|
1171
|
+
"valid_syntax": true,
|
|
1172
|
+
"valid_semantics": false,
|
|
1173
|
+
"message": "Term: complex(NCH:\"ENaC Complex\")\n Term did not match function signature: complexAbundance(F:abundance...)complexAbundance\n Term did not match function signature: complexAbundance(E:abundance,F:location)complexAbundance\n Term did not match function signature: complexAbundance(F:abundance...,F:location)complexAbundance\n Term did not match function signature: complexAbundance(E:abundance)complexAbundance\n\nTerm: ma(GOMF:\"transporter activity\")\n Term did not match function signature: molecularActivity(E:activity)molecularActivity\n\n",
|
|
1174
|
+
"warnings": [],
|
|
1175
|
+
"term_signatures": [
|
|
1176
|
+
{
|
|
1177
|
+
"term": "act(complex(NCH:\"ENaC Complex\"), ma(GOMF:\"transporter activity\"))",
|
|
1178
|
+
"valid": true,
|
|
1179
|
+
"valid_signatures": [
|
|
1180
|
+
"Term matched function signature: activity(F:abundance, F:molecularActivity)activity",
|
|
1181
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1182
|
+
],
|
|
1183
|
+
"invalid_signatures": [
|
|
1184
|
+
"Term did not match function signature: activity(F:abundance)activity",
|
|
1185
|
+
"Term did not match function signature: complexAbundance(F:abundance...)complexAbundance",
|
|
1186
|
+
"Term did not match function signature: complexAbundance(E:abundance,F:location)complexAbundance",
|
|
1187
|
+
"Term did not match function signature: complexAbundance(F:abundance...,F:location)complexAbundance",
|
|
1188
|
+
"Term did not match function signature: complexAbundance(E:abundance)complexAbundance",
|
|
1189
|
+
"Term did not match function signature: molecularActivity(E:activity)molecularActivity"
|
|
1190
|
+
]
|
|
1191
|
+
},
|
|
1192
|
+
{
|
|
1193
|
+
"term": "complex(NCH:\"ENaC Complex\")",
|
|
1194
|
+
"valid": false,
|
|
1195
|
+
"valid_signatures": [],
|
|
1196
|
+
"invalid_signatures": [
|
|
1197
|
+
"Term did not match function signature: complexAbundance(F:abundance...)complexAbundance",
|
|
1198
|
+
"Term did not match function signature: complexAbundance(E:abundance,F:location)complexAbundance",
|
|
1199
|
+
"Term did not match function signature: complexAbundance(F:abundance...,F:location)complexAbundance",
|
|
1200
|
+
"Term did not match function signature: complexAbundance(E:abundance)complexAbundance"
|
|
1201
|
+
]
|
|
1202
|
+
},
|
|
1203
|
+
{
|
|
1204
|
+
"term": "ma(GOMF:\"transporter activity\")",
|
|
1205
|
+
"valid": true,
|
|
1206
|
+
"valid_signatures": [
|
|
1207
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1208
|
+
],
|
|
1209
|
+
"invalid_signatures": [
|
|
1210
|
+
"Term did not match function signature: molecularActivity(E:activity)molecularActivity"
|
|
1211
|
+
]
|
|
1212
|
+
}
|
|
1213
|
+
]
|
|
1214
|
+
}
|
|
1215
|
+
}
|
|
1216
|
+
],
|
|
1217
|
+
[
|
|
1218
|
+
422,
|
|
1219
|
+
"p(RGD:STAT1, pmod(Me, Arg))",
|
|
1220
|
+
{
|
|
1221
|
+
"validation": {
|
|
1222
|
+
"expression": "p(RGD:STAT1, pmod(Me, Arg))",
|
|
1223
|
+
"valid_syntax": true,
|
|
1224
|
+
"valid_semantics": false,
|
|
1225
|
+
"message": "Term: p(RGD:STAT1, pmod(Me, Arg))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification\n\nTerm: pmod(Me, Arg)\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification\n\n",
|
|
1226
|
+
"warnings": [],
|
|
1227
|
+
"term_signatures": [
|
|
1228
|
+
{
|
|
1229
|
+
"term": "p(RGD:STAT1, pmod(Me, Arg))",
|
|
1230
|
+
"valid": false,
|
|
1231
|
+
"valid_signatures": [
|
|
1232
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1233
|
+
],
|
|
1234
|
+
"invalid_signatures": [
|
|
1235
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1236
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1237
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1238
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1239
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1240
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
1241
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1242
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1243
|
+
]
|
|
1244
|
+
},
|
|
1245
|
+
{
|
|
1246
|
+
"term": "pmod(Me, Arg)",
|
|
1247
|
+
"valid": true,
|
|
1248
|
+
"valid_signatures": [
|
|
1249
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1250
|
+
],
|
|
1251
|
+
"invalid_signatures": [
|
|
1252
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1253
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1254
|
+
]
|
|
1255
|
+
}
|
|
1256
|
+
]
|
|
1257
|
+
}
|
|
1258
|
+
}
|
|
1259
|
+
],
|
|
1260
|
+
[
|
|
1261
|
+
422,
|
|
1262
|
+
"rxn(reactants(a(CHEBI:phophoenolpyruvate), a(CHEBI:ADP)), products(a(CHEBI:pyruvate), a(CHEBI:ATP)))",
|
|
1263
|
+
{
|
|
1264
|
+
"validation": {
|
|
1265
|
+
"expression": "rxn(reactants(a(CHEBI:phophoenolpyruvate), a(CHEBI:ADP)), products(a(CHEBI:pyruvate), a(CHEBI:ATP)))",
|
|
1266
|
+
"valid_syntax": true,
|
|
1267
|
+
"valid_semantics": false,
|
|
1268
|
+
"message": "Term: a(CHEBI:phophoenolpyruvate)\n Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance\n Term did not match function signature: abundance(E:abundance)abundance\n Term did not match function signature: abundance(E:abundance,F:location)abundance\n\nTerm: a(CHEBI:ADP)\n Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance\n Term did not match function signature: abundance(E:abundance,F:location)abundance\n\nTerm: products(a(CHEBI:pyruvate), a(CHEBI:ATP))\n Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance\n Term did not match function signature: abundance(E:abundance,F:location)abundance\n Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance\n Term did not match function signature: abundance(E:abundance,F:location)abundance\n\nTerm: a(CHEBI:pyruvate)\n Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance\n Term did not match function signature: abundance(E:abundance,F:location)abundance\n\nTerm: a(CHEBI:ATP)\n Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance\n Term did not match function signature: abundance(E:abundance,F:location)abundance\n\n",
|
|
1269
|
+
"warnings": [],
|
|
1270
|
+
"term_signatures": [
|
|
1271
|
+
{
|
|
1272
|
+
"term": "rxn(reactants(a(CHEBI:phophoenolpyruvate), a(CHEBI:ADP)), products(a(CHEBI:pyruvate), a(CHEBI:ATP)))",
|
|
1273
|
+
"valid": true,
|
|
1274
|
+
"valid_signatures": [
|
|
1275
|
+
"Term matched function signature: reaction(F:reactants,F:products)abundance",
|
|
1276
|
+
"Term matched function signature: reactants(F:abundance...)reactants",
|
|
1277
|
+
"Term matched function signature: abundance(E:abundance)abundance",
|
|
1278
|
+
"Term matched function signature: products(F:abundance...)products",
|
|
1279
|
+
"Term matched function signature: abundance(E:abundance)abundance",
|
|
1280
|
+
"Term matched function signature: abundance(E:abundance)abundance"
|
|
1281
|
+
],
|
|
1282
|
+
"invalid_signatures": [
|
|
1283
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1284
|
+
"Term did not match function signature: abundance(E:abundance)abundance",
|
|
1285
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance",
|
|
1286
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1287
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance",
|
|
1288
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1289
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance",
|
|
1290
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1291
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance"
|
|
1292
|
+
]
|
|
1293
|
+
},
|
|
1294
|
+
{
|
|
1295
|
+
"term": "reactants(a(CHEBI:phophoenolpyruvate), a(CHEBI:ADP))",
|
|
1296
|
+
"valid": true,
|
|
1297
|
+
"valid_signatures": [
|
|
1298
|
+
"Term matched function signature: reactants(F:abundance...)reactants",
|
|
1299
|
+
"Term matched function signature: abundance(E:abundance)abundance"
|
|
1300
|
+
],
|
|
1301
|
+
"invalid_signatures": [
|
|
1302
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1303
|
+
"Term did not match function signature: abundance(E:abundance)abundance",
|
|
1304
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance",
|
|
1305
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1306
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance"
|
|
1307
|
+
]
|
|
1308
|
+
},
|
|
1309
|
+
{
|
|
1310
|
+
"term": "a(CHEBI:phophoenolpyruvate)",
|
|
1311
|
+
"valid": false,
|
|
1312
|
+
"valid_signatures": [],
|
|
1313
|
+
"invalid_signatures": [
|
|
1314
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1315
|
+
"Term did not match function signature: abundance(E:abundance)abundance",
|
|
1316
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance"
|
|
1317
|
+
]
|
|
1318
|
+
},
|
|
1319
|
+
{
|
|
1320
|
+
"term": "a(CHEBI:ADP)",
|
|
1321
|
+
"valid": true,
|
|
1322
|
+
"valid_signatures": [
|
|
1323
|
+
"Term matched function signature: abundance(E:abundance)abundance"
|
|
1324
|
+
],
|
|
1325
|
+
"invalid_signatures": [
|
|
1326
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1327
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance"
|
|
1328
|
+
]
|
|
1329
|
+
},
|
|
1330
|
+
{
|
|
1331
|
+
"term": "products(a(CHEBI:pyruvate), a(CHEBI:ATP))",
|
|
1332
|
+
"valid": true,
|
|
1333
|
+
"valid_signatures": [
|
|
1334
|
+
"Term matched function signature: products(F:abundance...)products",
|
|
1335
|
+
"Term matched function signature: abundance(E:abundance)abundance",
|
|
1336
|
+
"Term matched function signature: abundance(E:abundance)abundance"
|
|
1337
|
+
],
|
|
1338
|
+
"invalid_signatures": [
|
|
1339
|
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"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1340
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance",
|
|
1341
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1342
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance"
|
|
1343
|
+
]
|
|
1344
|
+
},
|
|
1345
|
+
{
|
|
1346
|
+
"term": "a(CHEBI:pyruvate)",
|
|
1347
|
+
"valid": true,
|
|
1348
|
+
"valid_signatures": [
|
|
1349
|
+
"Term matched function signature: abundance(E:abundance)abundance"
|
|
1350
|
+
],
|
|
1351
|
+
"invalid_signatures": [
|
|
1352
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1353
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance"
|
|
1354
|
+
]
|
|
1355
|
+
},
|
|
1356
|
+
{
|
|
1357
|
+
"term": "a(CHEBI:ATP)",
|
|
1358
|
+
"valid": true,
|
|
1359
|
+
"valid_signatures": [
|
|
1360
|
+
"Term matched function signature: abundance(E:abundance)abundance"
|
|
1361
|
+
],
|
|
1362
|
+
"invalid_signatures": [
|
|
1363
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1364
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance"
|
|
1365
|
+
]
|
|
1366
|
+
}
|
|
1367
|
+
]
|
|
1368
|
+
}
|
|
1369
|
+
}
|
|
1370
|
+
],
|
|
1371
|
+
[
|
|
1372
|
+
422,
|
|
1373
|
+
"p(MGI:NR2F2) -- bp(GOBP:angiogenesis)",
|
|
1374
|
+
{
|
|
1375
|
+
"validation": {
|
|
1376
|
+
"expression": "p(MGI:NR2F2) -- bp(GOBP:angiogenesis)",
|
|
1377
|
+
"valid_syntax": true,
|
|
1378
|
+
"valid_semantics": false,
|
|
1379
|
+
"message": "Term: p(MGI:NR2F2)\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: bp(GOBP:angiogenesis)\n\n",
|
|
1380
|
+
"warnings": [],
|
|
1381
|
+
"term_signatures": [
|
|
1382
|
+
{
|
|
1383
|
+
"term": "p(MGI:NR2F2)",
|
|
1384
|
+
"valid": false,
|
|
1385
|
+
"valid_signatures": [],
|
|
1386
|
+
"invalid_signatures": [
|
|
1387
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1388
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1389
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1390
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1391
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1392
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1393
|
+
]
|
|
1394
|
+
},
|
|
1395
|
+
{
|
|
1396
|
+
"term": "bp(GOBP:angiogenesis)",
|
|
1397
|
+
"valid": true,
|
|
1398
|
+
"valid_signatures": [
|
|
1399
|
+
"Term matched function signature: biologicalProcess(E:biologicalProcess)biologicalProcess"
|
|
1400
|
+
],
|
|
1401
|
+
"invalid_signatures": []
|
|
1402
|
+
}
|
|
1403
|
+
]
|
|
1404
|
+
}
|
|
1405
|
+
}
|
|
1406
|
+
],
|
|
1407
|
+
[
|
|
1408
|
+
422,
|
|
1409
|
+
"kin(p(MGI:Met)) -> r(MGI:Itgav)",
|
|
1410
|
+
{
|
|
1411
|
+
"validation": {
|
|
1412
|
+
"expression": "kin(p(MGI:Met)) -> r(MGI:Itgav)",
|
|
1413
|
+
"valid_syntax": true,
|
|
1414
|
+
"valid_semantics": false,
|
|
1415
|
+
"message": "Term: kin(p(MGI:Met))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: p(MGI:Met)\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: r(MGI:Itgav)\n Term did not match function signature: rnaAbundance(E:rnaAbundance,F:location)geneAbundance\n Term did not match function signature: rnaAbundance(E:rnaAbundance,F:variant)geneAbundance\n Term did not match function signature: rnaAbundance(F:fusion)geneAbundance\n\n",
|
|
1416
|
+
"warnings": [],
|
|
1417
|
+
"term_signatures": [
|
|
1418
|
+
{
|
|
1419
|
+
"term": "kin(p(MGI:Met))",
|
|
1420
|
+
"valid": false,
|
|
1421
|
+
"valid_signatures": [
|
|
1422
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
|
|
1423
|
+
],
|
|
1424
|
+
"invalid_signatures": [
|
|
1425
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1426
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1427
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1428
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1429
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1430
|
+
]
|
|
1431
|
+
},
|
|
1432
|
+
{
|
|
1433
|
+
"term": "p(MGI:Met)",
|
|
1434
|
+
"valid": true,
|
|
1435
|
+
"valid_signatures": [
|
|
1436
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
|
|
1437
|
+
],
|
|
1438
|
+
"invalid_signatures": [
|
|
1439
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1440
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1441
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1442
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1443
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1444
|
+
]
|
|
1445
|
+
},
|
|
1446
|
+
{
|
|
1447
|
+
"term": "r(MGI:Itgav)",
|
|
1448
|
+
"valid": true,
|
|
1449
|
+
"valid_signatures": [
|
|
1450
|
+
"Term matched function signature: rnaAbundance(E:rnaAbundance)geneAbundance"
|
|
1451
|
+
],
|
|
1452
|
+
"invalid_signatures": [
|
|
1453
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance,F:location)geneAbundance",
|
|
1454
|
+
"Term did not match function signature: rnaAbundance(E:rnaAbundance,F:variant)geneAbundance",
|
|
1455
|
+
"Term did not match function signature: rnaAbundance(F:fusion)geneAbundance"
|
|
1456
|
+
]
|
|
1457
|
+
}
|
|
1458
|
+
]
|
|
1459
|
+
}
|
|
1460
|
+
}
|
|
1461
|
+
],
|
|
1462
|
+
[
|
|
1463
|
+
422,
|
|
1464
|
+
"p(HGNC:RIPK1) -> act(p(GOCC:\"NF-kappaB complex\"), ma(tscript))",
|
|
1465
|
+
{
|
|
1466
|
+
"validation": {
|
|
1467
|
+
"expression": "p(HGNC:RIPK1) -> act(p(GOCC:\"NF-kappaB complex\"), ma(tscript))",
|
|
1468
|
+
"valid_syntax": true,
|
|
1469
|
+
"valid_semantics": false,
|
|
1470
|
+
"message": "Term: p(GOCC:\"NF-kappaB complex\")\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: ma(tscript)\n\n",
|
|
1471
|
+
"warnings": [],
|
|
1472
|
+
"term_signatures": [
|
|
1473
|
+
{
|
|
1474
|
+
"term": "p(HGNC:RIPK1)",
|
|
1475
|
+
"valid": true,
|
|
1476
|
+
"valid_signatures": [
|
|
1477
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
|
|
1478
|
+
],
|
|
1479
|
+
"invalid_signatures": [
|
|
1480
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1481
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1482
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1483
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1484
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1485
|
+
]
|
|
1486
|
+
},
|
|
1487
|
+
{
|
|
1488
|
+
"term": "act(p(GOCC:\"NF-kappaB complex\"), ma(tscript))",
|
|
1489
|
+
"valid": true,
|
|
1490
|
+
"valid_signatures": [
|
|
1491
|
+
"Term matched function signature: activity(F:abundance, F:molecularActivity)activity",
|
|
1492
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
1493
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1494
|
+
],
|
|
1495
|
+
"invalid_signatures": [
|
|
1496
|
+
"Term did not match function signature: activity(F:abundance)activity",
|
|
1497
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1498
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1499
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1500
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1501
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1502
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1503
|
+
]
|
|
1504
|
+
},
|
|
1505
|
+
{
|
|
1506
|
+
"term": "p(GOCC:\"NF-kappaB complex\")",
|
|
1507
|
+
"valid": false,
|
|
1508
|
+
"valid_signatures": [],
|
|
1509
|
+
"invalid_signatures": [
|
|
1510
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1511
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1512
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1513
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1514
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1515
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1516
|
+
]
|
|
1517
|
+
},
|
|
1518
|
+
{
|
|
1519
|
+
"term": "ma(tscript)",
|
|
1520
|
+
"valid": true,
|
|
1521
|
+
"valid_signatures": [
|
|
1522
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
1523
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1524
|
+
],
|
|
1525
|
+
"invalid_signatures": []
|
|
1526
|
+
}
|
|
1527
|
+
]
|
|
1528
|
+
}
|
|
1529
|
+
}
|
|
1530
|
+
],
|
|
1531
|
+
[
|
|
1532
|
+
422,
|
|
1533
|
+
"act(p(HGNC:RIPK1), ma(kin)) causesNoChange act(p(GOCC:\"NF-kappaB complex\"), ma(tscript))",
|
|
1534
|
+
{
|
|
1535
|
+
"validation": {
|
|
1536
|
+
"expression": "act(p(HGNC:RIPK1), ma(kin)) causesNoChange act(p(GOCC:\"NF-kappaB complex\"), ma(tscript))",
|
|
1537
|
+
"valid_syntax": true,
|
|
1538
|
+
"valid_semantics": false,
|
|
1539
|
+
"message": "Term: p(GOCC:\"NF-kappaB complex\")\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: ma(tscript)\n\n",
|
|
1540
|
+
"warnings": [],
|
|
1541
|
+
"term_signatures": [
|
|
1542
|
+
{
|
|
1543
|
+
"term": "act(p(HGNC:RIPK1), ma(kin))",
|
|
1544
|
+
"valid": true,
|
|
1545
|
+
"valid_signatures": [
|
|
1546
|
+
"Term matched function signature: activity(F:abundance, F:molecularActivity)activity",
|
|
1547
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1548
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
1549
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1550
|
+
],
|
|
1551
|
+
"invalid_signatures": [
|
|
1552
|
+
"Term did not match function signature: activity(F:abundance)activity",
|
|
1553
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1554
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1555
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1556
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1557
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1558
|
+
]
|
|
1559
|
+
},
|
|
1560
|
+
{
|
|
1561
|
+
"term": "p(HGNC:RIPK1)",
|
|
1562
|
+
"valid": true,
|
|
1563
|
+
"valid_signatures": [
|
|
1564
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
|
|
1565
|
+
],
|
|
1566
|
+
"invalid_signatures": [
|
|
1567
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1568
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1569
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1570
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1571
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1572
|
+
]
|
|
1573
|
+
},
|
|
1574
|
+
{
|
|
1575
|
+
"term": "ma(kin)",
|
|
1576
|
+
"valid": true,
|
|
1577
|
+
"valid_signatures": [
|
|
1578
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
1579
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1580
|
+
],
|
|
1581
|
+
"invalid_signatures": []
|
|
1582
|
+
},
|
|
1583
|
+
{
|
|
1584
|
+
"term": "act(p(GOCC:\"NF-kappaB complex\"), ma(tscript))",
|
|
1585
|
+
"valid": true,
|
|
1586
|
+
"valid_signatures": [
|
|
1587
|
+
"Term matched function signature: activity(F:abundance, F:molecularActivity)activity",
|
|
1588
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
1589
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1590
|
+
],
|
|
1591
|
+
"invalid_signatures": [
|
|
1592
|
+
"Term did not match function signature: activity(F:abundance)activity",
|
|
1593
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1594
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1595
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1596
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1597
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1598
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1599
|
+
]
|
|
1600
|
+
},
|
|
1601
|
+
{
|
|
1602
|
+
"term": "p(GOCC:\"NF-kappaB complex\")",
|
|
1603
|
+
"valid": false,
|
|
1604
|
+
"valid_signatures": [],
|
|
1605
|
+
"invalid_signatures": [
|
|
1606
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1607
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1608
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1609
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1610
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1611
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1612
|
+
]
|
|
1613
|
+
},
|
|
1614
|
+
{
|
|
1615
|
+
"term": "ma(tscript)",
|
|
1616
|
+
"valid": true,
|
|
1617
|
+
"valid_signatures": [
|
|
1618
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
1619
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1620
|
+
],
|
|
1621
|
+
"invalid_signatures": []
|
|
1622
|
+
}
|
|
1623
|
+
]
|
|
1624
|
+
}
|
|
1625
|
+
}
|
|
1626
|
+
],
|
|
1627
|
+
[
|
|
1628
|
+
422,
|
|
1629
|
+
"a(SCHEM:\"smoke condensate, cigarette (gas phase)\") -> complex(p(PFH:\"Histone H3 Family\",pmod(Me3, Lys, 27)), g(HGNC:DKK1))",
|
|
1630
|
+
{
|
|
1631
|
+
"validation": {
|
|
1632
|
+
"expression": "a(SCHEM:\"smoke condensate, cigarette (gas phase)\") -> complex(p(PFH:\"Histone H3 Family\",pmod(Me3, Lys, 27)), g(HGNC:DKK1))",
|
|
1633
|
+
"valid_syntax": true,
|
|
1634
|
+
"valid_semantics": false,
|
|
1635
|
+
"message": "Term: p(PFH:\"Histone H3 Family\", pmod(Me3, Lys, 27))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\nTerm: pmod(Me3, Lys, 27)\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\nTerm: g(HGNC:DKK1)\n Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance\n Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance\n Term did not match function signature: geneAbundance(F:fusion)geneAbundance\n\n",
|
|
1636
|
+
"warnings": [],
|
|
1637
|
+
"term_signatures": [
|
|
1638
|
+
{
|
|
1639
|
+
"term": "a(SCHEM:\"smoke condensate, cigarette (gas phase)\")",
|
|
1640
|
+
"valid": true,
|
|
1641
|
+
"valid_signatures": [
|
|
1642
|
+
"Term matched function signature: abundance(E:abundance)abundance"
|
|
1643
|
+
],
|
|
1644
|
+
"invalid_signatures": [
|
|
1645
|
+
"Term did not match function signature: abundance(E:abundance, F:molecularActivity)abundance",
|
|
1646
|
+
"Term did not match function signature: abundance(E:abundance,F:location)abundance"
|
|
1647
|
+
]
|
|
1648
|
+
},
|
|
1649
|
+
{
|
|
1650
|
+
"term": "complex(p(PFH:\"Histone H3 Family\", pmod(Me3, Lys, 27)), g(HGNC:DKK1))",
|
|
1651
|
+
"valid": true,
|
|
1652
|
+
"valid_signatures": [
|
|
1653
|
+
"Term matched function signature: complexAbundance(F:abundance...)complexAbundance",
|
|
1654
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification",
|
|
1655
|
+
"Term matched function signature: geneAbundance(E:geneAbundance)geneAbundance"
|
|
1656
|
+
],
|
|
1657
|
+
"invalid_signatures": [
|
|
1658
|
+
"Term did not match function signature: complexAbundance(E:abundance,F:location)complexAbundance",
|
|
1659
|
+
"Term did not match function signature: complexAbundance(F:abundance...,F:location)complexAbundance",
|
|
1660
|
+
"Term did not match function signature: complexAbundance(E:abundance)complexAbundance",
|
|
1661
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1662
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1663
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1664
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1665
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1666
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
1667
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1668
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification",
|
|
1669
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
1670
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
1671
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
1672
|
+
]
|
|
1673
|
+
},
|
|
1674
|
+
{
|
|
1675
|
+
"term": "p(PFH:\"Histone H3 Family\", pmod(Me3, Lys, 27))",
|
|
1676
|
+
"valid": false,
|
|
1677
|
+
"valid_signatures": [
|
|
1678
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1679
|
+
],
|
|
1680
|
+
"invalid_signatures": [
|
|
1681
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1682
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1683
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1684
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1685
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1686
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
1687
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1688
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1689
|
+
]
|
|
1690
|
+
},
|
|
1691
|
+
{
|
|
1692
|
+
"term": "pmod(Me3, Lys, 27)",
|
|
1693
|
+
"valid": true,
|
|
1694
|
+
"valid_signatures": [
|
|
1695
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1696
|
+
],
|
|
1697
|
+
"invalid_signatures": [
|
|
1698
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1699
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1700
|
+
]
|
|
1701
|
+
},
|
|
1702
|
+
{
|
|
1703
|
+
"term": "g(HGNC:DKK1)",
|
|
1704
|
+
"valid": true,
|
|
1705
|
+
"valid_signatures": [
|
|
1706
|
+
"Term matched function signature: geneAbundance(E:geneAbundance)geneAbundance"
|
|
1707
|
+
],
|
|
1708
|
+
"invalid_signatures": [
|
|
1709
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
1710
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
1711
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
1712
|
+
]
|
|
1713
|
+
}
|
|
1714
|
+
]
|
|
1715
|
+
}
|
|
1716
|
+
}
|
|
1717
|
+
],
|
|
1718
|
+
[
|
|
1719
|
+
422,
|
|
1720
|
+
"p(HGNC:MAPK3, pmod(Ph, Thr, 202), pmod(Ph, Tyr, 204)) => act(p(HGNC:MAPK3), ma(kin))",
|
|
1721
|
+
{
|
|
1722
|
+
"validation": {
|
|
1723
|
+
"expression": "p(HGNC:MAPK3, pmod(Ph, Thr, 202), pmod(Ph, Tyr, 204)) => act(p(HGNC:MAPK3), ma(kin))",
|
|
1724
|
+
"valid_syntax": true,
|
|
1725
|
+
"valid_semantics": false,
|
|
1726
|
+
"message": "Term: p(HGNC:MAPK3, pmod(Ph, Thr, 202), pmod(Ph, Tyr, 204))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\nTerm: pmod(Ph, Thr, 202)\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\nTerm: pmod(Ph, Tyr, 204)\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\nTerm: act(p(HGNC:MAPK3), ma(kin))\n Term did not match function signature: activity(F:abundance)activity\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: p(HGNC:MAPK3)\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: ma(kin)\n\n",
|
|
1727
|
+
"warnings": [],
|
|
1728
|
+
"term_signatures": [
|
|
1729
|
+
{
|
|
1730
|
+
"term": "p(HGNC:MAPK3, pmod(Ph, Thr, 202), pmod(Ph, Tyr, 204))",
|
|
1731
|
+
"valid": false,
|
|
1732
|
+
"valid_signatures": [
|
|
1733
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification",
|
|
1734
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1735
|
+
],
|
|
1736
|
+
"invalid_signatures": [
|
|
1737
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1738
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1739
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1740
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1741
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1742
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
1743
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1744
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification",
|
|
1745
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1746
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1747
|
+
]
|
|
1748
|
+
},
|
|
1749
|
+
{
|
|
1750
|
+
"term": "pmod(Ph, Thr, 202)",
|
|
1751
|
+
"valid": true,
|
|
1752
|
+
"valid_signatures": [
|
|
1753
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1754
|
+
],
|
|
1755
|
+
"invalid_signatures": [
|
|
1756
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1757
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1758
|
+
]
|
|
1759
|
+
},
|
|
1760
|
+
{
|
|
1761
|
+
"term": "pmod(Ph, Tyr, 204)",
|
|
1762
|
+
"valid": true,
|
|
1763
|
+
"valid_signatures": [
|
|
1764
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1765
|
+
],
|
|
1766
|
+
"invalid_signatures": [
|
|
1767
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1768
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1769
|
+
]
|
|
1770
|
+
},
|
|
1771
|
+
{
|
|
1772
|
+
"term": "act(p(HGNC:MAPK3), ma(kin))",
|
|
1773
|
+
"valid": true,
|
|
1774
|
+
"valid_signatures": [
|
|
1775
|
+
"Term matched function signature: activity(F:abundance, F:molecularActivity)activity",
|
|
1776
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1777
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
1778
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1779
|
+
],
|
|
1780
|
+
"invalid_signatures": [
|
|
1781
|
+
"Term did not match function signature: activity(F:abundance)activity",
|
|
1782
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1783
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1784
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1785
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1786
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1787
|
+
]
|
|
1788
|
+
},
|
|
1789
|
+
{
|
|
1790
|
+
"term": "p(HGNC:MAPK3)",
|
|
1791
|
+
"valid": true,
|
|
1792
|
+
"valid_signatures": [
|
|
1793
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
|
|
1794
|
+
],
|
|
1795
|
+
"invalid_signatures": [
|
|
1796
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1797
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1798
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1799
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1800
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1801
|
+
]
|
|
1802
|
+
},
|
|
1803
|
+
{
|
|
1804
|
+
"term": "ma(kin)",
|
|
1805
|
+
"valid": true,
|
|
1806
|
+
"valid_signatures": [
|
|
1807
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
1808
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
1809
|
+
],
|
|
1810
|
+
"invalid_signatures": []
|
|
1811
|
+
}
|
|
1812
|
+
]
|
|
1813
|
+
}
|
|
1814
|
+
}
|
|
1815
|
+
],
|
|
1816
|
+
[
|
|
1817
|
+
422,
|
|
1818
|
+
"p(HGNC:CTNNB1, pmod(Ph, Ser, 45)) => (kin(p(SFAM:\"GSK3 Family\")) => p(HGNC:CTNNB1, pmod(Ph, Thr, 41)))",
|
|
1819
|
+
{
|
|
1820
|
+
"validation": {
|
|
1821
|
+
"expression": "p(HGNC:CTNNB1, pmod(Ph, Ser, 45)) => (kin(p(SFAM:\"GSK3 Family\")) => p(HGNC:CTNNB1, pmod(Ph, Thr, 41)))",
|
|
1822
|
+
"valid_syntax": true,
|
|
1823
|
+
"valid_semantics": false,
|
|
1824
|
+
"message": "Term: kin(p(SFAM:\"GSK3 Family\"))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: p(SFAM:\"GSK3 Family\")\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: p(HGNC:CTNNB1, pmod(Ph, Thr, 41))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\nTerm: pmod(Ph, Thr, 41)\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\n",
|
|
1825
|
+
"warnings": [],
|
|
1826
|
+
"term_signatures": [
|
|
1827
|
+
{
|
|
1828
|
+
"term": "p(HGNC:CTNNB1, pmod(Ph, Ser, 45))",
|
|
1829
|
+
"valid": true,
|
|
1830
|
+
"valid_signatures": [
|
|
1831
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1832
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1833
|
+
],
|
|
1834
|
+
"invalid_signatures": [
|
|
1835
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1836
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1837
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1838
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1839
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
1840
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1841
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1842
|
+
]
|
|
1843
|
+
},
|
|
1844
|
+
{
|
|
1845
|
+
"term": "pmod(Ph, Ser, 45)",
|
|
1846
|
+
"valid": true,
|
|
1847
|
+
"valid_signatures": [
|
|
1848
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1849
|
+
],
|
|
1850
|
+
"invalid_signatures": [
|
|
1851
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1852
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1853
|
+
]
|
|
1854
|
+
},
|
|
1855
|
+
{
|
|
1856
|
+
"term": "kin(p(SFAM:\"GSK3 Family\"))",
|
|
1857
|
+
"valid": false,
|
|
1858
|
+
"valid_signatures": [
|
|
1859
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
|
|
1860
|
+
],
|
|
1861
|
+
"invalid_signatures": [
|
|
1862
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1863
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1864
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1865
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1866
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1867
|
+
]
|
|
1868
|
+
},
|
|
1869
|
+
{
|
|
1870
|
+
"term": "p(SFAM:\"GSK3 Family\")",
|
|
1871
|
+
"valid": true,
|
|
1872
|
+
"valid_signatures": [
|
|
1873
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance)proteinAbundance"
|
|
1874
|
+
],
|
|
1875
|
+
"invalid_signatures": [
|
|
1876
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1877
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1878
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1879
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1880
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1881
|
+
]
|
|
1882
|
+
},
|
|
1883
|
+
{
|
|
1884
|
+
"term": "p(HGNC:CTNNB1, pmod(Ph, Thr, 41))",
|
|
1885
|
+
"valid": true,
|
|
1886
|
+
"valid_signatures": [
|
|
1887
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1888
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1889
|
+
],
|
|
1890
|
+
"invalid_signatures": [
|
|
1891
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1892
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1893
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1894
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1895
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
1896
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1897
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1898
|
+
]
|
|
1899
|
+
},
|
|
1900
|
+
{
|
|
1901
|
+
"term": "pmod(Ph, Thr, 41)",
|
|
1902
|
+
"valid": true,
|
|
1903
|
+
"valid_signatures": [
|
|
1904
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
1905
|
+
],
|
|
1906
|
+
"invalid_signatures": [
|
|
1907
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
1908
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
1909
|
+
]
|
|
1910
|
+
}
|
|
1911
|
+
]
|
|
1912
|
+
}
|
|
1913
|
+
}
|
|
1914
|
+
],
|
|
1915
|
+
[
|
|
1916
|
+
422,
|
|
1917
|
+
"complex(p(MGI:EPOR), p(MGI:CSF2RB))",
|
|
1918
|
+
{
|
|
1919
|
+
"validation": {
|
|
1920
|
+
"expression": "complex(p(MGI:EPOR), p(MGI:CSF2RB))",
|
|
1921
|
+
"valid_syntax": true,
|
|
1922
|
+
"valid_semantics": false,
|
|
1923
|
+
"message": "Term: p(MGI:EPOR)\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: p(MGI:CSF2RB)\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\n",
|
|
1924
|
+
"warnings": [],
|
|
1925
|
+
"term_signatures": [
|
|
1926
|
+
{
|
|
1927
|
+
"term": "complex(p(MGI:EPOR), p(MGI:CSF2RB))",
|
|
1928
|
+
"valid": true,
|
|
1929
|
+
"valid_signatures": [
|
|
1930
|
+
"Term matched function signature: complexAbundance(F:abundance...)complexAbundance"
|
|
1931
|
+
],
|
|
1932
|
+
"invalid_signatures": [
|
|
1933
|
+
"Term did not match function signature: complexAbundance(E:abundance,F:location)complexAbundance",
|
|
1934
|
+
"Term did not match function signature: complexAbundance(F:abundance...,F:location)complexAbundance",
|
|
1935
|
+
"Term did not match function signature: complexAbundance(E:abundance)complexAbundance",
|
|
1936
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1937
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1938
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1939
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1940
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1941
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
1942
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1943
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1944
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1945
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1946
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1947
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1948
|
+
]
|
|
1949
|
+
},
|
|
1950
|
+
{
|
|
1951
|
+
"term": "p(MGI:EPOR)",
|
|
1952
|
+
"valid": false,
|
|
1953
|
+
"valid_signatures": [],
|
|
1954
|
+
"invalid_signatures": [
|
|
1955
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1956
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1957
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1958
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1959
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1960
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1961
|
+
]
|
|
1962
|
+
},
|
|
1963
|
+
{
|
|
1964
|
+
"term": "p(MGI:CSF2RB)",
|
|
1965
|
+
"valid": false,
|
|
1966
|
+
"valid_signatures": [],
|
|
1967
|
+
"invalid_signatures": [
|
|
1968
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
1969
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
1970
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
1971
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
1972
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
1973
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
1974
|
+
]
|
|
1975
|
+
}
|
|
1976
|
+
]
|
|
1977
|
+
}
|
|
1978
|
+
}
|
|
1979
|
+
],
|
|
1980
|
+
[
|
|
1981
|
+
422,
|
|
1982
|
+
"complex(p(GOCC:\"AP1 complex\"), g(HGNC:CCL23))",
|
|
1983
|
+
{
|
|
1984
|
+
"validation": {
|
|
1985
|
+
"expression": "complex(p(GOCC:\"AP1 complex\"), g(HGNC:CCL23))",
|
|
1986
|
+
"valid_syntax": true,
|
|
1987
|
+
"valid_semantics": false,
|
|
1988
|
+
"message": "Term: p(GOCC:\"AP1 complex\")\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: g(HGNC:CCL23)\n Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance\n Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance\n Term did not match function signature: geneAbundance(F:fusion)geneAbundance\n\n",
|
|
1989
|
+
"warnings": [],
|
|
1990
|
+
"term_signatures": [
|
|
1991
|
+
{
|
|
1992
|
+
"term": "complex(p(GOCC:\"AP1 complex\"), g(HGNC:CCL23))",
|
|
1993
|
+
"valid": true,
|
|
1994
|
+
"valid_signatures": [
|
|
1995
|
+
"Term matched function signature: complexAbundance(F:abundance...)complexAbundance",
|
|
1996
|
+
"Term matched function signature: geneAbundance(E:geneAbundance)geneAbundance"
|
|
1997
|
+
],
|
|
1998
|
+
"invalid_signatures": [
|
|
1999
|
+
"Term did not match function signature: complexAbundance(E:abundance,F:location)complexAbundance",
|
|
2000
|
+
"Term did not match function signature: complexAbundance(F:abundance...,F:location)complexAbundance",
|
|
2001
|
+
"Term did not match function signature: complexAbundance(E:abundance)complexAbundance",
|
|
2002
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
2003
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
2004
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
2005
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
2006
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
2007
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
2008
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
2009
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
2010
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
2011
|
+
]
|
|
2012
|
+
},
|
|
2013
|
+
{
|
|
2014
|
+
"term": "p(GOCC:\"AP1 complex\")",
|
|
2015
|
+
"valid": false,
|
|
2016
|
+
"valid_signatures": [],
|
|
2017
|
+
"invalid_signatures": [
|
|
2018
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
2019
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
2020
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
2021
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
2022
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
2023
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
2024
|
+
]
|
|
2025
|
+
},
|
|
2026
|
+
{
|
|
2027
|
+
"term": "g(HGNC:CCL23)",
|
|
2028
|
+
"valid": true,
|
|
2029
|
+
"valid_signatures": [
|
|
2030
|
+
"Term matched function signature: geneAbundance(E:geneAbundance)geneAbundance"
|
|
2031
|
+
],
|
|
2032
|
+
"invalid_signatures": [
|
|
2033
|
+
"Term did not match function signature: geneAbundance(E:abundance,F:location)geneAbundance",
|
|
2034
|
+
"Term did not match function signature: geneAbundance(E:geneAbundance,F:variant)geneAbundance",
|
|
2035
|
+
"Term did not match function signature: geneAbundance(F:fusion)geneAbundance"
|
|
2036
|
+
]
|
|
2037
|
+
}
|
|
2038
|
+
]
|
|
2039
|
+
}
|
|
2040
|
+
}
|
|
2041
|
+
],
|
|
2042
|
+
[
|
|
2043
|
+
422,
|
|
2044
|
+
"act(p(PFH:\"MAPK p38 Family\"), ma(kin)) => p(HGNC:SIAH2, pmod(Ph, Thr, 24))",
|
|
2045
|
+
{
|
|
2046
|
+
"validation": {
|
|
2047
|
+
"expression": "act(p(PFH:\"MAPK p38 Family\"), ma(kin)) => p(HGNC:SIAH2, pmod(Ph, Thr, 24))",
|
|
2048
|
+
"valid_syntax": true,
|
|
2049
|
+
"valid_semantics": false,
|
|
2050
|
+
"message": "Term: p(PFH:\"MAPK p38 Family\")\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: ma(kin)\n\nTerm: p(HGNC:SIAH2, pmod(Ph, Thr, 24))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\nTerm: pmod(Ph, Thr, 24)\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\n",
|
|
2051
|
+
"warnings": [],
|
|
2052
|
+
"term_signatures": [
|
|
2053
|
+
{
|
|
2054
|
+
"term": "act(p(PFH:\"MAPK p38 Family\"), ma(kin))",
|
|
2055
|
+
"valid": true,
|
|
2056
|
+
"valid_signatures": [
|
|
2057
|
+
"Term matched function signature: activity(F:abundance, F:molecularActivity)activity",
|
|
2058
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
2059
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
2060
|
+
],
|
|
2061
|
+
"invalid_signatures": [
|
|
2062
|
+
"Term did not match function signature: activity(F:abundance)activity",
|
|
2063
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
2064
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
2065
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
2066
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
2067
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
2068
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
2069
|
+
]
|
|
2070
|
+
},
|
|
2071
|
+
{
|
|
2072
|
+
"term": "p(PFH:\"MAPK p38 Family\")",
|
|
2073
|
+
"valid": false,
|
|
2074
|
+
"valid_signatures": [],
|
|
2075
|
+
"invalid_signatures": [
|
|
2076
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
2077
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
2078
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
2079
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
2080
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
2081
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
2082
|
+
]
|
|
2083
|
+
},
|
|
2084
|
+
{
|
|
2085
|
+
"term": "ma(kin)",
|
|
2086
|
+
"valid": true,
|
|
2087
|
+
"valid_signatures": [
|
|
2088
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
2089
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
2090
|
+
],
|
|
2091
|
+
"invalid_signatures": []
|
|
2092
|
+
},
|
|
2093
|
+
{
|
|
2094
|
+
"term": "p(HGNC:SIAH2, pmod(Ph, Thr, 24))",
|
|
2095
|
+
"valid": true,
|
|
2096
|
+
"valid_signatures": [
|
|
2097
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
2098
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
2099
|
+
],
|
|
2100
|
+
"invalid_signatures": [
|
|
2101
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
2102
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
2103
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
2104
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
2105
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
2106
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
2107
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
2108
|
+
]
|
|
2109
|
+
},
|
|
2110
|
+
{
|
|
2111
|
+
"term": "pmod(Ph, Thr, 24)",
|
|
2112
|
+
"valid": true,
|
|
2113
|
+
"valid_signatures": [
|
|
2114
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
2115
|
+
],
|
|
2116
|
+
"invalid_signatures": [
|
|
2117
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
2118
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
2119
|
+
]
|
|
2120
|
+
}
|
|
2121
|
+
]
|
|
2122
|
+
}
|
|
2123
|
+
}
|
|
2124
|
+
],
|
|
2125
|
+
[
|
|
2126
|
+
422,
|
|
2127
|
+
"act(p(PFH:\"MAPK p38 Family\"), ma(kin)) => p(HGNC:SIAH2, pmod(Ph, Ser, 29))",
|
|
2128
|
+
{
|
|
2129
|
+
"validation": {
|
|
2130
|
+
"expression": "act(p(PFH:\"MAPK p38 Family\"), ma(kin)) => p(HGNC:SIAH2, pmod(Ph, Ser, 29))",
|
|
2131
|
+
"valid_syntax": true,
|
|
2132
|
+
"valid_semantics": false,
|
|
2133
|
+
"message": "Term: p(PFH:\"MAPK p38 Family\")\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n\nTerm: ma(kin)\n\nTerm: p(HGNC:SIAH2, pmod(Ph, Ser, 29))\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance\n Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance\n Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\nTerm: pmod(Ph, Ser, 29)\n Term did not match function signature: proteinModification(E:modificationType)proteinModification\n Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification\n\n",
|
|
2134
|
+
"warnings": [],
|
|
2135
|
+
"term_signatures": [
|
|
2136
|
+
{
|
|
2137
|
+
"term": "act(p(PFH:\"MAPK p38 Family\"), ma(kin))",
|
|
2138
|
+
"valid": true,
|
|
2139
|
+
"valid_signatures": [
|
|
2140
|
+
"Term matched function signature: activity(F:abundance, F:molecularActivity)activity",
|
|
2141
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
2142
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
2143
|
+
],
|
|
2144
|
+
"invalid_signatures": [
|
|
2145
|
+
"Term did not match function signature: activity(F:abundance)activity",
|
|
2146
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
2147
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
2148
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
2149
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
2150
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
2151
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
2152
|
+
]
|
|
2153
|
+
},
|
|
2154
|
+
{
|
|
2155
|
+
"term": "p(PFH:\"MAPK p38 Family\")",
|
|
2156
|
+
"valid": false,
|
|
2157
|
+
"valid_signatures": [],
|
|
2158
|
+
"invalid_signatures": [
|
|
2159
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
2160
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
2161
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
2162
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
2163
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
2164
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance"
|
|
2165
|
+
]
|
|
2166
|
+
},
|
|
2167
|
+
{
|
|
2168
|
+
"term": "ma(kin)",
|
|
2169
|
+
"valid": true,
|
|
2170
|
+
"valid_signatures": [
|
|
2171
|
+
"Term matched function signature: molecularActivity(E:activity)molecularActivity",
|
|
2172
|
+
"Term matched function signature: molecularActivity(Any)molecularActivity"
|
|
2173
|
+
],
|
|
2174
|
+
"invalid_signatures": []
|
|
2175
|
+
},
|
|
2176
|
+
{
|
|
2177
|
+
"term": "p(HGNC:SIAH2, pmod(Ph, Ser, 29))",
|
|
2178
|
+
"valid": true,
|
|
2179
|
+
"valid_signatures": [
|
|
2180
|
+
"Term matched function signature: proteinAbundance(E:proteinAbundance,F:proteinModification...)proteinAbundance",
|
|
2181
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
2182
|
+
],
|
|
2183
|
+
"invalid_signatures": [
|
|
2184
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:location)proteinAbundance",
|
|
2185
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:fragment)proteinAbundance",
|
|
2186
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance)proteinAbundance",
|
|
2187
|
+
"Term did not match function signature: proteinAbundance(E:proteinAbundance,F:variant)proteinAbundance",
|
|
2188
|
+
"Term did not match function signature: proteinAbundance(F:fusion)proteinAbundance",
|
|
2189
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
2190
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
2191
|
+
]
|
|
2192
|
+
},
|
|
2193
|
+
{
|
|
2194
|
+
"term": "pmod(Ph, Ser, 29)",
|
|
2195
|
+
"valid": true,
|
|
2196
|
+
"valid_signatures": [
|
|
2197
|
+
"Term matched function signature: proteinModification(E:modificationType,T:AminoAcid,E:*)proteinModification"
|
|
2198
|
+
],
|
|
2199
|
+
"invalid_signatures": [
|
|
2200
|
+
"Term did not match function signature: proteinModification(E:modificationType)proteinModification",
|
|
2201
|
+
"Term did not match function signature: proteinModification(E:modificationType,T:AminoAcid)proteinModification"
|
|
2202
|
+
]
|
|
2203
|
+
}
|
|
2204
|
+
]
|
|
2205
|
+
}
|
|
2206
|
+
}
|
|
2207
|
+
]
|
|
2208
|
+
]
|