openbel-api 1.2.4-java → 1.2.5-java

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data/VERSION CHANGED
@@ -1 +1 @@
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- 1.2.4
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+ 1.2.5
@@ -103,7 +103,8 @@ module OpenBEL
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  private
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  def setup(item)
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- @annotation_id, @annotation_value_id = URI(item.uri).path.split('/')[3..-1]
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+ @annotation_id = item.annotation.prefix.first
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+ @annotation_value_id = item.identifier.first
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  end
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  def link_self
@@ -103,24 +103,23 @@ module OpenBEL
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  class NamespaceValueResourceSerializer < BaseSerializer
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  adapter Oat::Adapters::HAL
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  schema do
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- parts = URI(item.delete(:rdf_uri)).path.split('/')[3..-1]
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- namespace_id = parts[0]
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- namespace_value_id = parts.join('/')
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+ id = item[:namespace][:prefix]
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+ value_id = item[:identifier]
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  type :namespace_value
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  property :namespace_value, item
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- link :self, link_self(namespace_value_id)
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- link :collection, link_namespace(namespace_id)
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- link :equivalents, link_equivalents(namespace_value_id)
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- link :orthologs, link_orthologs(namespace_value_id)
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+ link :self, link_self(id, value_id)
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+ link :collection, link_namespace(id)
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+ link :equivalents, link_equivalents(id, value_id)
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+ link :orthologs, link_orthologs(id, value_id)
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  end
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  private
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- def link_self(id)
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+ def link_self(id, value_id)
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  {
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  :type => :namespace_value,
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- :href => "#{base_url}/api/namespaces/#{id}"
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+ :href => "#{base_url}/api/namespaces/#{id}/values/#{value_id}"
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  }
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  end
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@@ -131,17 +130,17 @@ module OpenBEL
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  }
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  end
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- def link_equivalents(id)
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+ def link_equivalents(id, value_id)
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  {
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  :type => :namespace_value_collection,
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- :href => "#{base_url}/api/namespaces/#{id}/equivalents"
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+ :href => "#{base_url}/api/namespaces/#{id}/values/#{value_id}/equivalents"
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  }
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  end
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- def link_orthologs(id)
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+ def link_orthologs(id, value_id)
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  {
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  :type => :namespace_value_collection,
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- :href => "#{base_url}/api/namespaces/#{id}/orthologs"
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+ :href => "#{base_url}/api/namespaces/#{id}/values/#{value_id}/orthologs"
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  }
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  end
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  end
@@ -285,11 +285,14 @@ module OpenBEL
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  {'Content-Type' => 'application/json'},
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  render_json(
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  {
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- valid_syntax: false,
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- valid_semantics: false,
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- message: 'Invalid syntax.',
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- warnings: [],
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- term_signatures: []
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+ validation: {
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+ expression: bel,
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+ valid_syntax: false,
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+ valid_semantics: false,
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+ message: 'Invalid syntax.',
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+ warnings: [],
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+ term_signatures: []
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+ }
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  }
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  )
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  )
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: openbel-api
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  version: !ruby/object:Gem::Version
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- version: 1.2.4
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+ version: 1.2.5
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  platform: java
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  authors:
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  - Anthony Bargnesi