openbel-api 0.5.1-java → 0.6.1-java
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/.gemspec +14 -6
- data/CHANGELOG.md +32 -0
- data/README.md +2 -2
- data/VERSION +1 -1
- data/app/openbel/api/config.rb +12 -0
- data/app/openbel/api/helpers/base.rb +17 -0
- data/app/openbel/api/helpers/evidence.rb +74 -0
- data/app/openbel/api/helpers/filters.rb +94 -0
- data/app/openbel/api/helpers/translators.rb +73 -0
- data/app/openbel/api/resources/evidence_transform.rb +1 -13
- data/app/openbel/api/routes/authenticate.rb +0 -92
- data/app/openbel/api/routes/base.rb +19 -5
- data/app/openbel/api/routes/datasets.rb +65 -151
- data/app/openbel/api/routes/evidence.rb +10 -95
- data/config/config.yml +4 -6
- data/lib/openbel/api/evidence/api.rb +8 -0
- data/lib/openbel/api/evidence/facet_filter.rb +3 -3
- data/lib/openbel/api/evidence/mongo.rb +304 -44
- data/lib/openbel/api/evidence/mongo_facet.rb +173 -66
- metadata +112 -26
- data/config/async_evidence.rb +0 -12
- data/config/async_jena.rb +0 -14
data/config/async_evidence.rb
DELETED
|
@@ -1,12 +0,0 @@
|
|
|
1
|
-
# $LOAD_PATH.unshift File.expand_path('../lib', __FILE__)
|
|
2
|
-
# require 'evidence/mongo'
|
|
3
|
-
# config['evidence'] = OpenBEL::Evidence::Evidence.new(mongo)
|
|
4
|
-
|
|
5
|
-
# mongo = {
|
|
6
|
-
# :host => 'localhost',
|
|
7
|
-
# :port => 27017,
|
|
8
|
-
# :database => 'openbel'
|
|
9
|
-
# }
|
|
10
|
-
|
|
11
|
-
require 'em-mongo'
|
|
12
|
-
config['evidence_collection'] = EM::Mongo::Connection.new('localhost', 27017).db('openbel').collection('evidence')
|
data/config/async_jena.rb
DELETED
|
@@ -1,14 +0,0 @@
|
|
|
1
|
-
require 'bel'
|
|
2
|
-
|
|
3
|
-
# Use Jena RdfRepository plugin from bel.rb.
|
|
4
|
-
config['rdf_repository'] = BEL::RdfRepository.plugins[:jena].create_repository(:tdb_directory => 'data2')
|
|
5
|
-
$stdout.puts "Initialized rdf/jena."
|
|
6
|
-
|
|
7
|
-
# Include RDF monkeypatch of BEL::Model classes.
|
|
8
|
-
BEL::Translator.plugins[:rdf].create_translator
|
|
9
|
-
$stdout.puts "Loaded monkey patch for BEL RDF methods."
|
|
10
|
-
|
|
11
|
-
# Bootstrap
|
|
12
|
-
require 'rdf'
|
|
13
|
-
UUID.generate
|
|
14
|
-
$stdout.puts "Bootstrapped RDF (uuid)."
|