openbel-api 0.5.0-java → 0.5.1-java

checksums.yaml

@@ -1,7 +1,7 @@
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data/.gemspec

@@ -11,7 +11,7 @@ Gem::Specification.new do |spec|
                                  'Nick Bargnesi',
                                  'William Hayes'
                                ]
-  spec.date                  = %q{2015-12-17}
+  spec.date                  = %q{2015-12-18}
   spec.email                 = %q{abargnesi@selventa.com}
   spec.files                 = [
                                  Dir.glob('app/**/*.{json,rb,ru}'),

data/CHANGELOG.md

@@ -3,6 +3,12 @@ All notable changes to openbel-api will be documented in this file. The curated
 
 This project adheres to [Semantic Versioning][Semantic Versioning].
 
+## [0.5.1][0.5.1] - 2015-12-18
+### Fixed
+- Authentication error for MongoDB user when faceting on `GET /api/evidence` ([Issue #93][93]).
+
+-----
+
 ## [0.5.0][0.5.0] - 2015-12-17
 ### Added
 - Report API version from executables (`openbel-api`, `openbel-config`) and REST API (`GET /api/version`) ([Issue #91][91]).
@@ -34,8 +40,10 @@ This project adheres to [Semantic Versioning][Semantic Versioning].
   - Retrieve equivalent namespace values from the individual.
   - Retrieve orthologous namespace values from the individual.
 
+[0.5.1]:                       https://github.com/OpenBEL/openbel-api/compare/0.5.0...0.5.1
 [0.5.0]:                       https://github.com/OpenBEL/openbel-api/compare/0.4.0...0.5.0
 [Semantic Versioning]:         http://semver.org
 [MongoDB User Authentication]: https://github.com/OpenBEL/openbel-api/wiki/Configuring-the-Evidence-Store#mongodb-user-authentication
 [91]:                          https://github.com/OpenBEL/openbel-api/issues/91
 [92]:                          https://github.com/OpenBEL/openbel-api/issues/92
+[93]:                          https://github.com/OpenBEL/openbel-api/issues/93

data/VERSION

@@ -1 +1 @@
-0.5.0
+0.5.1

data/lib/openbel/api/evidence/mongo.rb

@@ -33,11 +33,7 @@ module OpenBEL
           {:"$**" => Mongo::TEXT },
           :background => true
         )
-        @evidence_facets = EvidenceFacets.new(
-          :host     => host,
-          :port     => port,
-          :database => db
-        )
+        @evidence_facets = EvidenceFacets.new(options)
       end
 
       def create_evidence(evidence)

data/lib/openbel/api/evidence/mongo_facet.rb

@@ -12,10 +12,19 @@ module OpenBEL
       include FacetFilter
 
       def initialize(options = {})
-        host             = options.delete(:host)
-        port             = options.delete(:port)
-        db               = options.delete(:database)
+        host             = options[:host]
+        port             = options[:port]
+        db               = options[:database]
         @db              = MongoClient.new(host, port).db(db)
+
+        # Authenticate user if provided.
+        username = options[:username]
+        password = options[:password]
+        if username && password
+          auth_db = options[:authentication_database] || db
+          @db.authenticate(username, password, nil, auth_db)
+        end
+
         @evidence        = @db[:evidence]
         @evidence_facets = @db[:evidence_facets]
       end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: openbel-api
 version: !ruby/object:Gem::Version
-  version: 0.5.0
+  version: 0.5.1
 platform: java
 authors:
 - Anthony Bargnesi
@@ -10,7 +10,7 @@ authors:
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2015-12-17 00:00:00.000000000 Z
+date: 2015-12-18 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   requirement: !ruby/object:Gem::Requirement