open_fda_api 0.0.5 → 0.0.13
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- checksums.yaml +4 -4
- data/CHANGELOG.md +33 -1
- data/Gemfile.lock +30 -1
- data/README.md +81 -23
- data/bin/console +3 -0
- data/lib/open_fda_api/animal_and_veterinary.rb +26 -0
- data/lib/open_fda_api/client.rb +40 -4
- data/lib/open_fda_api/device.rb +138 -0
- data/lib/open_fda_api/drugs.rb +63 -27
- data/lib/open_fda_api/endpoint.rb +29 -0
- data/lib/open_fda_api/food.rb +40 -0
- data/lib/open_fda_api/other.rb +40 -0
- data/lib/open_fda_api/query_builder.rb +38 -20
- data/lib/open_fda_api/query_inputs.rb +17 -0
- data/lib/open_fda_api/tobacco.rb +26 -0
- data/lib/open_fda_api/version.rb +1 -1
- data/lib/open_fda_api.rb +10 -4
- data/open_fda_api.gemspec +3 -1
- metadata +37 -2
checksums.yaml
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: ea876aa2b2ba1588293e37e59f95271ec0361215a5fa68ce1cbfb447eba764d0
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data.tar.gz: 1c19caa9c5e140dcefa5cbeee8acaa1fd1c48d6553b36f55b86505664ef10301
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 73786ceb0a046b754ad438c67393f3c7baa5c8205266d21df276be6e69ba06bbd5ed94488941364347bbccf0e69ca93874f7db1ad7f1c2bb942a5ae81798413c
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data.tar.gz: 2f5b335ae39a62f77d72e436caf06a9b7304e02c3c0c81057a082ceb416ad2dff936003c98b7ac36c57fef47a3d64c58b6c4c215c0cbf7acc2ad6e2ecf33798c
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data/CHANGELOG.md
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##
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## openFDA API
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## [0.0.13] - 2022-01-27
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- Set API key if it is available and send it in with every request
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## [0.0.12] - 2022-01-24
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- Animal & Veterinary Endpoint
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- Tobacco Endpoint
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- Other Endpoint
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## [0.0.11] - 2022-01-24
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- Include Food endpoints
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## [0.0.10] - 2022-01-24
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- Include Device endpoints
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- Pull out Endpoint common behavior to a base class
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## [0.0.9] - 2022-01-24
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- Filled out the following Drug endpoints:
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- product_labeling
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- ndc_directory
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- recall_enforcement_reports
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- drugs_at_fda
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## [0.0.8] - 2022-01-24
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- Delete the `OpenFdaApi.client` method since its only function was to forward messages
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## [0.0.7] - 2022-01-23
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- Use Faraday instead of using Net::HTTP directly
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- Introduce `QueryInputs` to group query params passed in together
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## [0.0.6] - 2022-01-21
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- Support for more query fields
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## [0.0.5] - 2022-01-20
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- Validate, against search fields given to us from openFDA API, when building queries.
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data/Gemfile.lock
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PATH
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remote: .
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specs:
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open_fda_api (0.0.
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open_fda_api (0.0.12)
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faraday (~> 1.9)
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faraday_middleware (~> 1.2)
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GEM
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remote: https://rubygems.org/
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ast (2.4.2)
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coderay (1.1.3)
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diff-lcs (1.5.0)
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faraday (1.9.3)
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faraday-em_http (~> 1.0)
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faraday-em_synchrony (~> 1.0)
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faraday-excon (~> 1.1)
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faraday-httpclient (~> 1.0)
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faraday-multipart (~> 1.0)
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faraday-net_http (~> 1.0)
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faraday-net_http_persistent (~> 1.0)
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faraday-patron (~> 1.0)
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faraday-rack (~> 1.0)
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faraday-retry (~> 1.0)
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ruby2_keywords (>= 0.0.4)
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faraday-em_http (1.0.0)
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faraday-em_synchrony (1.0.0)
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faraday-excon (1.1.0)
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faraday-httpclient (1.0.1)
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faraday-multipart (1.0.3)
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multipart-post (>= 1.2, < 3)
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faraday-net_http (1.0.1)
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faraday-net_http_persistent (1.2.0)
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faraday-patron (1.0.0)
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faraday-rack (1.0.0)
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faraday-retry (1.0.3)
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faraday_middleware (1.2.0)
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faraday (~> 1.0)
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method_source (1.0.0)
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multipart-post (2.1.1)
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parallel (1.21.0)
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parser (3.1.0.0)
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ast (~> 2.4.1)
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rubocop-ast (1.15.1)
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parser (>= 3.0.1.1)
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ruby-progressbar (1.11.0)
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ruby2_keywords (0.0.5)
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unicode-display_width (2.1.0)
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PLATFORMS
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data/README.md
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bundle install
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```
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##
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There are 5 main category of endpoints that openFDA API provides: Drug, Device, Food, Other, and Tobacco.
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Each category has further subcategories. Everything is accessible from the `OpenFdaApi.client`.
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## Usage
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```ruby
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client = OpenFdaApi::Client.new
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# or if you have registered an API key
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client = OpenFdaApi::Client.new(api_key: ENV['OPEN_FDA_API_KEY'])
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# First 20 results where (fieldA=foo AND fieldB=bar) OR (fieldC=baz AND fieldA exists)
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# Sorted by (fieldD) in descending order
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# Skip the first 8 results
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args = {
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search: [{"fieldA" => "foo", "fieldB" => "bar"}, {"fieldC" => "baz", "_exists_" => "fieldA"}],
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sort: [{"fieldD" => "desc"}],
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skip: 8,
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limit: 20
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}
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# Animal & Veterinary API
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client.animal_and_veterinary.adverse_events(args)
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# Drug API
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client.drugs.adverse_events(args)
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client.drugs.product_labeling(args)
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client.drugs.ndc_directory(args)
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client.drugs.recall_enforcement_reports(args)
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client.drugs.drugs_at_fda(args)
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# Device API
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client.device.premarket_510ks(args)
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client.device.classification(args)
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client.device.recall_enforcement_reports(args)
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client.device.adverse_events(args)
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client.device.premarket_approval(args)
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client.device.recalls(args)
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client.device.registrations_and_listings(args)
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client.device.covid19_serological_tests(args)
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client.device.unique_device_identifier(args)
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# Food API
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client.food.recall_enforcement_reports(args)
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client.food.adverse_events(args)
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# Other API
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client.other.nsde(args)
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client.other.substance_data_reports(args)
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# Tobacco API
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client.tobacco.problem_reports(args)
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```
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###
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### Querying
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The
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The openFDA API can be queried with these arguments: `search`, `sort`, `count`, `skip`, and `limit`.
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`search`, `sort`, and `count` have the same format. They are arrays of hashes. Each hash has a set of fields and values
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that are ANDed together and all the elements in the array are ORed together. Here are some examples to illustrate:
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#### Adverse Events
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```ruby
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# Default arguments
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args = {
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search: [],
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sort: [],
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count: [],
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skip: 0,
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limit: 1,
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}
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# Search for a single field
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args = {
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search: [{ fieldA: "value" }]
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}
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# Search for field A AND field B
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args = {
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search: [{ fieldA: "value", fieldB: "other value" }]
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}
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# Search for field A OR field B
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args = {
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search: [{ fieldA: "value"}, { fieldB: "other value" }]
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}
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# Search for field A or field B, and skip the first 10 results
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args = {
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search: [{ fieldA: "value"}, { fieldB: "other value" }],
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skip: 10
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}
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```
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### Device (Not Implemented Yet)
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### Food (Not Implemented Yet)
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### Other (Not Implemented Yet)
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### Tobacco (Not Implemented Yet)
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## Development
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After checking out the repo, run `bin/setup` to install dependencies.
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data/bin/console
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# frozen_string_literal: true
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module OpenFdaApi
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# Interact with the Animal & Veterinary API Endpoint:
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# - Adverse Events
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class AnimalAndVeterinary < Endpoint
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# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/animalandveterinary/event/searchable-fields/
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# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/animalandveterinary/event/searchable-fields/
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# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/animalandveterinary/event/searchable-fields/
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# @param skip [Integer] Number of results to skip
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# @param limit [Integer] Number of results to return
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# @return Response from the API parsed as JSON
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def adverse_events(search: [], sort: [], count: [], skip: 0, limit: 1)
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endpoint = "event.json"
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inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
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query = build_query(inputs, {}) # TODO: Upload valid fields
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make_request(endpoint, query)
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end
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private
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def endpoint_path
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"/animalandveterinary"
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end
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end
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end
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data/lib/open_fda_api/client.rb
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# frozen_string_literal: true
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require "faraday"
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require "faraday_middleware"
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module OpenFdaApi
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# Gives you access to the main nouns in the openFDA API
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class Client
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attr_reader :api_key
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attr_reader :api_key, :adapter
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BASE_URL = "https://api.fda.gov"
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def initialize(api_key: nil, adapter: Faraday.default_adapter, stubs: nil)
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@api_key = api_key
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@adapter = adapter
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@stubs = stubs
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end
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def drugs
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OpenFdaApi::Drugs.new
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OpenFdaApi::Drugs.new(self)
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end
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def device
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OpenFdaApi::Device.new(self)
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end
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def food
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OpenFdaApi::Food.new(self)
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end
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def animal_and_veterinary
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OpenFdaApi::AnimalAndVeterinary.new(self)
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end
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def tobacco
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OpenFdaApi::Tobacco.new(self)
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end
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def other
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OpenFdaApi::Other.new(self)
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end
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def connection
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@connection ||= Faraday.new(BASE_URL) do |conn|
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conn.request :json
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conn.response :dates
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conn.response :json, content_type: "application/json"
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conn.adapter adapter, @stubs
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end
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end
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end
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end
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@@ -0,0 +1,138 @@
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# frozen_string_literal: true
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module OpenFdaApi
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# Interact with the Device API Endpoint:
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# - 501(k)
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# - Classification
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# - Recall Enforcement Reports
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# - Adverse Events
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# - Pre-market Approval
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# - Recalls
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# - Registrations and Listings
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# - Covid19 Serological Testing Evaluations
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# - Unique Device Identifier
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class Device < Endpoint
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# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/device/event/searchable-fields/
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# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/device/event/searchable-fields/
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# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/device/event/searchable-fields/
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# @param skip [Integer] Number of results to skip
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# @param limit [Integer] Number of results to return
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# @return Response from the API parsed as JSON
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def adverse_events(search: [], sort: [], count: [], skip: 0, limit: 1)
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endpoint = "event.json"
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inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
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query = build_query(inputs, {})
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make_request(endpoint, query)
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end
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# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/device/classification/searchable-fields/
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# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/device/classification/searchable-fields/
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# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/device/classification/searchable-fields/
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# @param skip [Integer] Number of results to skip
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# @param limit [Integer] Number of results to return
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# @return Response from the API parsed as JSON
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def classification(search: [], sort: [], count: [], skip: 0, limit: 1)
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endpoint = "classification.json"
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inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
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query = build_query(inputs, {}) # TODO: Upload valid fields
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make_request(endpoint, query)
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end
|
40
|
+
|
41
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/device/510k/searchable-fields/
|
42
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/device/510k/searchable-fields/
|
43
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/device/510k/searchable-fields/
|
44
|
+
# @param skip [Integer] Number of results to skip
|
45
|
+
# @param limit [Integer] Number of results to return
|
46
|
+
# @return Response from the API parsed as JSON
|
47
|
+
def premarket_510ks(search: [], sort: [], count: [], skip: 0, limit: 1)
|
48
|
+
endpoint = "510k.json"
|
49
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
50
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
51
|
+
make_request(endpoint, query)
|
52
|
+
end
|
53
|
+
|
54
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/device/enforcement/searchable-fields/
|
55
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/device/enforcement/searchable-fields/
|
56
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/device/enforcement/searchable-fields/
|
57
|
+
# @param skip [Integer] Number of results to skip
|
58
|
+
# @param limit [Integer] Number of results to return
|
59
|
+
# @return Response from the API parsed as JSON
|
60
|
+
def recall_enforcement_reports(search: [], sort: [], count: [], skip: 0, limit: 1)
|
61
|
+
endpoint = "enforcement.json"
|
62
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
63
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
64
|
+
make_request(endpoint, query)
|
65
|
+
end
|
66
|
+
|
67
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/device/pma/searchable-fields/
|
68
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/device/pma/searchable-fields/
|
69
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/device/pma/searchable-fields/
|
70
|
+
# @param skip [Integer] Number of results to skip
|
71
|
+
# @param limit [Integer] Number of results to return
|
72
|
+
# @return Response from the API parsed as JSON
|
73
|
+
def premarket_approval(search: [], sort: [], count: [], skip: 0, limit: 1)
|
74
|
+
endpoint = "pma.json"
|
75
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
76
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
77
|
+
make_request(endpoint, query)
|
78
|
+
end
|
79
|
+
|
80
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/device/recall/searchable-fields/
|
81
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/device/recall/searchable-fields/
|
82
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/device/recall/searchable-fields/
|
83
|
+
# @param skip [Integer] Number of results to skip
|
84
|
+
# @param limit [Integer] Number of results to return
|
85
|
+
# @return Response from the API parsed as JSON
|
86
|
+
def recalls(search: [], sort: [], count: [], skip: 0, limit: 1)
|
87
|
+
endpoint = "recall.json"
|
88
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
89
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
90
|
+
make_request(endpoint, query)
|
91
|
+
end
|
92
|
+
|
93
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/device/registrationlisting/searchable-fields/
|
94
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/device/registrationlisting/searchable-fields/
|
95
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/device/registrationlisting/searchable-fields/
|
96
|
+
# @param skip [Integer] Number of results to skip
|
97
|
+
# @param limit [Integer] Number of results to return
|
98
|
+
# @return Response from the API parsed as JSON
|
99
|
+
def registrations_and_listings(search: [], sort: [], count: [], skip: 0, limit: 1)
|
100
|
+
endpoint = "registrationlisting.json"
|
101
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
102
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
103
|
+
make_request(endpoint, query)
|
104
|
+
end
|
105
|
+
|
106
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/device/covid19serology/searchable-fields/
|
107
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/device/covid19serology/searchable-fields/
|
108
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/device/covid19serology/searchable-fields/
|
109
|
+
# @param skip [Integer] Number of results to skip
|
110
|
+
# @param limit [Integer] Number of results to return
|
111
|
+
# @return Response from the API parsed as JSON
|
112
|
+
def covid19_serological_tests(search: [], sort: [], count: [], skip: 0, limit: 1)
|
113
|
+
endpoint = "covid19serology.json"
|
114
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
115
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
116
|
+
make_request(endpoint, query)
|
117
|
+
end
|
118
|
+
|
119
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/device/udi/searchable-fields/
|
120
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/device/udi/searchable-fields/
|
121
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/device/udi/searchable-fields/
|
122
|
+
# @param skip [Integer] Number of results to skip
|
123
|
+
# @param limit [Integer] Number of results to return
|
124
|
+
# @return Response from the API parsed as JSON
|
125
|
+
def unique_device_identifier(search: [], sort: [], count: [], skip: 0, limit: 1)
|
126
|
+
endpoint = "udi.json"
|
127
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
128
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
129
|
+
make_request(endpoint, query)
|
130
|
+
end
|
131
|
+
|
132
|
+
private
|
133
|
+
|
134
|
+
def endpoint_path
|
135
|
+
"/device"
|
136
|
+
end
|
137
|
+
end
|
138
|
+
end
|
data/lib/open_fda_api/drugs.rb
CHANGED
@@ -1,52 +1,88 @@
|
|
1
1
|
# frozen_string_literal: true
|
2
2
|
|
3
|
-
require "net/http"
|
4
|
-
require "json"
|
5
3
|
require "yaml"
|
6
|
-
require "open_fda_api/query_builder"
|
7
4
|
|
8
5
|
module OpenFdaApi
|
9
6
|
# Interact with the Drugs API Endpoint:
|
10
|
-
#
|
7
|
+
# - Adverse Events
|
11
8
|
# - Product Labeling
|
12
9
|
# - NDC Directory
|
13
10
|
# - Recall Enforcement Reports
|
14
11
|
# - Drugs@FDA)
|
15
|
-
class Drugs
|
16
|
-
|
17
|
-
|
18
|
-
|
12
|
+
class Drugs < Endpoint
|
13
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/drug/event/searchable-fields/
|
14
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/drug/event/searchable-fields/
|
15
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/drug/event/searchable-fields/
|
16
|
+
# @param skip [Integer] Number of results to skip
|
17
|
+
# @param limit [Integer] Number of results to return
|
18
|
+
# @return Response from the API parsed as JSON
|
19
|
+
def adverse_events(search: [], sort: [], count: [], skip: 0, limit: 1)
|
20
|
+
endpoint = "event.json"
|
21
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
22
|
+
query = build_query(inputs, self.class.valid_adverse_events_fields)
|
23
|
+
make_request(endpoint, query)
|
19
24
|
end
|
20
25
|
|
21
|
-
#
|
22
|
-
#
|
23
|
-
#
|
24
|
-
#
|
25
|
-
# @param
|
26
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/drug/event/searchable-fields/
|
27
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/drug/event/searchable-fields/
|
28
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/drug/event/searchable-fields/
|
29
|
+
# @param skip [Integer] Number of results to skip
|
30
|
+
# @param limit [Integer] Number of results to return
|
26
31
|
# @return Response from the API parsed as JSON
|
27
|
-
def
|
28
|
-
endpoint = "
|
29
|
-
|
30
|
-
|
31
|
-
make_request(
|
32
|
+
def product_labeling(search: [], sort: [], count: [], skip: 0, limit: 1)
|
33
|
+
endpoint = "label.json"
|
34
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
35
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
36
|
+
make_request(endpoint, query)
|
32
37
|
end
|
33
38
|
|
34
|
-
|
35
|
-
|
39
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/drug/event/searchable-fields/
|
40
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/drug/event/searchable-fields/
|
41
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/drug/event/searchable-fields/
|
42
|
+
# @param skip [Integer] Number of results to skip
|
43
|
+
# @param limit [Integer] Number of results to return
|
44
|
+
# @return Response from the API parsed as JSON
|
45
|
+
def ndc_directory(search: [], sort: [], count: [], skip: 0, limit: 1)
|
46
|
+
endpoint = "ndc.json"
|
47
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
48
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
49
|
+
make_request(endpoint, query)
|
36
50
|
end
|
37
51
|
|
38
|
-
|
52
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/drug/event/searchable-fields/
|
53
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/drug/event/searchable-fields/
|
54
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/drug/event/searchable-fields/
|
55
|
+
# @param skip [Integer] Number of results to skip
|
56
|
+
# @param limit [Integer] Number of results to return
|
57
|
+
# @return Response from the API parsed as JSON
|
58
|
+
def recall_enforcement_reports(search: [], sort: [], count: [], skip: 0, limit: 1)
|
59
|
+
endpoint = "enforcement.json"
|
60
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
61
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
62
|
+
make_request(endpoint, query)
|
63
|
+
end
|
39
64
|
|
40
|
-
|
41
|
-
|
65
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/drug/event/searchable-fields/
|
66
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/drug/event/searchable-fields/
|
67
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/drug/event/searchable-fields/
|
68
|
+
# @param skip [Integer] Number of results to skip
|
69
|
+
# @param limit [Integer] Number of results to return
|
70
|
+
# @return Response from the API parsed as JSON
|
71
|
+
def drugs_at_fda(search: [], sort: [], count: [], skip: 0, limit: 1)
|
72
|
+
endpoint = "drugsfda.json"
|
73
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
74
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
75
|
+
make_request(endpoint, query)
|
42
76
|
end
|
43
77
|
|
44
|
-
def
|
45
|
-
|
78
|
+
def self.valid_adverse_events_fields
|
79
|
+
@valid_adverse_events_fields ||= ::YAML.load_file("#{__dir__}/adverse_events_fields.yml")
|
46
80
|
end
|
47
81
|
|
48
|
-
|
49
|
-
|
82
|
+
private
|
83
|
+
|
84
|
+
def endpoint_path
|
85
|
+
"/drug"
|
50
86
|
end
|
51
87
|
end
|
52
88
|
end
|
@@ -0,0 +1,29 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
module OpenFdaApi
|
4
|
+
# Base class for all endpoints to share behavior like building queries and making requests
|
5
|
+
class Endpoint
|
6
|
+
attr_reader :client
|
7
|
+
|
8
|
+
def initialize(client)
|
9
|
+
@client = client
|
10
|
+
end
|
11
|
+
|
12
|
+
def build_query(query_input, valid_search_fields)
|
13
|
+
QueryBuilder.new(query_input: query_input, valid_search_fields: valid_search_fields).build_query
|
14
|
+
end
|
15
|
+
|
16
|
+
def build_inputs(search:, sort:, count:, skip:, limit:)
|
17
|
+
QueryInputs.new(search: search, sort: sort, count: count, skip: skip, limit: limit, api_key: client.api_key)
|
18
|
+
end
|
19
|
+
|
20
|
+
def make_request(endpoint, query)
|
21
|
+
url = "#{endpoint_path}/#{endpoint}"
|
22
|
+
if query.empty?
|
23
|
+
client.connection.get(url)
|
24
|
+
else
|
25
|
+
client.connection.get(url, query)
|
26
|
+
end.body
|
27
|
+
end
|
28
|
+
end
|
29
|
+
end
|
@@ -0,0 +1,40 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
module OpenFdaApi
|
4
|
+
# Interact with the Food API Endpoint:
|
5
|
+
# - Adverse Events
|
6
|
+
# - Recall Enforcement Reports
|
7
|
+
class Food < Endpoint
|
8
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/food/enforcement/searchable-fields/
|
9
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/food/enforcement/searchable-fields/
|
10
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/food/enforcement/searchable-fields/
|
11
|
+
# @param skip [Integer] Number of results to skip
|
12
|
+
# @param limit [Integer] Number of results to return
|
13
|
+
# @return Response from the API parsed as JSON
|
14
|
+
def adverse_events(search: [], sort: [], count: [], skip: 0, limit: 1)
|
15
|
+
endpoint = "event.json"
|
16
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
17
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
18
|
+
make_request(endpoint, query)
|
19
|
+
end
|
20
|
+
|
21
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/food/enforcement/searchable-fields/
|
22
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/food/enforcement/searchable-fields/
|
23
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/food/enforcement/searchable-fields/
|
24
|
+
# @param skip [Integer] Number of results to skip
|
25
|
+
# @param limit [Integer] Number of results to return
|
26
|
+
# @return Response from the API parsed as JSON
|
27
|
+
def recall_enforcement_reports(search: [], sort: [], count: [], skip: 0, limit: 1)
|
28
|
+
endpoint = "enforcement.json"
|
29
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
30
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
31
|
+
make_request(endpoint, query)
|
32
|
+
end
|
33
|
+
|
34
|
+
private
|
35
|
+
|
36
|
+
def endpoint_path
|
37
|
+
"/food"
|
38
|
+
end
|
39
|
+
end
|
40
|
+
end
|
@@ -0,0 +1,40 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
module OpenFdaApi
|
4
|
+
# Interact with the Other API Endpoint:
|
5
|
+
# - NSDE
|
6
|
+
# - Substance Data Reports
|
7
|
+
class Other < Endpoint
|
8
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/other/nsde/searchable-fields/
|
9
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/other/nsde/searchable-fields/
|
10
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/other/nsde/searchable-fields/
|
11
|
+
# @param skip [Integer] Number of results to skip
|
12
|
+
# @param limit [Integer] Number of results to return
|
13
|
+
# @return Response from the API parsed as JSON
|
14
|
+
def nsde(search: [], sort: [], count: [], skip: 0, limit: 1)
|
15
|
+
endpoint = "nsde.json"
|
16
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
17
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
18
|
+
make_request(endpoint, query)
|
19
|
+
end
|
20
|
+
|
21
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/other/substance/searchable-fields/
|
22
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/other/substance/searchable-fields/
|
23
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/other/substance/searchable-fields/
|
24
|
+
# @param skip [Integer] Number of results to skip
|
25
|
+
# @param limit [Integer] Number of results to return
|
26
|
+
# @return Response from the API parsed as JSON
|
27
|
+
def substance_data_reports(search: [], sort: [], count: [], skip: 0, limit: 1)
|
28
|
+
endpoint = "substance.json"
|
29
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
30
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
31
|
+
make_request(endpoint, query)
|
32
|
+
end
|
33
|
+
|
34
|
+
private
|
35
|
+
|
36
|
+
def endpoint_path
|
37
|
+
"/other"
|
38
|
+
end
|
39
|
+
end
|
40
|
+
end
|
@@ -25,53 +25,71 @@ module OpenFdaApi
|
|
25
25
|
# Use in combination with limit to paginate results. Currently, the largest allowed value for the skip parameter
|
26
26
|
# is 25000. See Paging if you require paging through larger result sets.
|
27
27
|
class QueryBuilder
|
28
|
-
# @param [
|
29
|
-
|
30
|
-
|
31
|
-
|
28
|
+
# @param [Hash] valid_search_fields
|
29
|
+
# @param [QueryInputs] query_input
|
30
|
+
def initialize(query_input:, valid_search_fields:)
|
31
|
+
# TODO: Turn validations back on once we get basic functionality working; need to flex on different field types
|
32
|
+
# validate_arguments!(valid_search_fields, query_input: query_input)
|
33
|
+
warn "You've passed in a valid_search_fields arg but it isn't being used right now..." if valid_search_fields
|
34
|
+
@search = build_query_string(query_fields: query_input.search)
|
35
|
+
@sort = build_query_string(query_fields: query_input.sort)
|
36
|
+
@count = build_query_string(query_fields: query_input.count)
|
37
|
+
@skip = build_skip_string(query_input.skip)
|
38
|
+
@limit = query_input.limit
|
39
|
+
@api_key = query_input.api_key
|
32
40
|
end
|
33
41
|
|
34
|
-
# @return [
|
42
|
+
# @return [Hash] the query string portion of a request
|
35
43
|
def build_query
|
36
|
-
|
37
|
-
|
38
|
-
|
39
|
-
|
40
|
-
|
44
|
+
{
|
45
|
+
api_key: @api_key,
|
46
|
+
search: @search,
|
47
|
+
sort: @sort,
|
48
|
+
count: @count,
|
49
|
+
skip: @skip,
|
50
|
+
limit: @limit
|
51
|
+
}.compact.reject { |_k, v| v.to_s.empty? }
|
41
52
|
end
|
42
53
|
|
43
54
|
private
|
44
55
|
|
45
|
-
def validate_arguments!(valid_search_fields,
|
56
|
+
def validate_arguments!(valid_search_fields, query_input:)
|
46
57
|
# `search` keys must exist in adverse_events_fields.yml
|
47
|
-
invalid_fields = get_invalid_fields(valid_search_fields: valid_search_fields, fields: search)
|
58
|
+
invalid_fields = get_invalid_fields(valid_search_fields: valid_search_fields, fields: query_input.search)
|
48
59
|
raise InvalidQueryArgument, "'search' has invalid fields: #{invalid_fields}" if invalid_fields.any?
|
49
60
|
|
50
61
|
# `sort` keys must exist in adverse_events_fields.yml
|
51
|
-
invalid_fields = get_invalid_fields(valid_search_fields: valid_search_fields, fields: sort)
|
62
|
+
invalid_fields = get_invalid_fields(valid_search_fields: valid_search_fields, fields: query_input.sort)
|
52
63
|
raise InvalidQueryArgument, "'sort' has invalid fields: #{invalid_fields}" if invalid_fields.any?
|
53
64
|
|
54
65
|
# `count` keys must exist in adverse_events_fields.yml
|
55
|
-
invalid_fields = get_invalid_fields(valid_search_fields: valid_search_fields, fields: count)
|
66
|
+
invalid_fields = get_invalid_fields(valid_search_fields: valid_search_fields, fields: query_input.count)
|
56
67
|
raise InvalidQueryArgument, "'count' has invalid fields: #{invalid_fields}" if invalid_fields.any?
|
57
68
|
|
58
69
|
# `count` and `skip` cannot be set at the same time
|
59
|
-
return unless count_and_skip_set?(count, skip)
|
70
|
+
return unless count_and_skip_set?(query_input.count, query_input.skip)
|
60
71
|
|
61
72
|
raise InvalidQueryArgument, "'count' and 'skip' cannot both be set at the same time!"
|
62
73
|
end
|
63
74
|
|
64
|
-
def
|
65
|
-
return "" if
|
75
|
+
def build_query_string(query_fields:)
|
76
|
+
return "" if query_fields.empty?
|
66
77
|
|
67
|
-
|
78
|
+
build_groupings(query_fields).to_s
|
79
|
+
end
|
80
|
+
|
81
|
+
def build_skip_string(skip)
|
82
|
+
skip.positive? ? skip.to_s : ""
|
83
|
+
end
|
84
|
+
|
85
|
+
def build_groupings(fields)
|
86
|
+
fields.map do |and_args|
|
68
87
|
"(#{and_args.map { |k, v| "#{k}:#{v.gsub(" ", "+")}" }.join("+AND+")})"
|
69
88
|
end.join("+")
|
70
|
-
|
71
|
-
"search=#{value}"
|
72
89
|
end
|
73
90
|
|
74
91
|
def get_invalid_fields(valid_search_fields:, fields:)
|
92
|
+
# TODO: valid_search_fields define types and we need to check against those
|
75
93
|
fields.map(&:keys).flatten.select do |field|
|
76
94
|
if field.include?(".") # nested field (e.g. patient.patientagegroup)
|
77
95
|
dig_values = field.split(".").join(",properties,").split(",")
|
@@ -0,0 +1,17 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
module OpenFdaApi
|
4
|
+
# Group of inputs to build the query against the API with
|
5
|
+
class QueryInputs
|
6
|
+
attr_reader :search, :sort, :count, :skip, :limit, :api_key
|
7
|
+
|
8
|
+
def initialize(**params)
|
9
|
+
@search = params[:search] || []
|
10
|
+
@sort = params[:sort] || []
|
11
|
+
@count = params[:count] || []
|
12
|
+
@skip = params[:skip] || 0
|
13
|
+
@limit = params[:limit] || nil
|
14
|
+
@api_key = params[:api_key] || nil
|
15
|
+
end
|
16
|
+
end
|
17
|
+
end
|
@@ -0,0 +1,26 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
module OpenFdaApi
|
4
|
+
# Interact with the Tobacco API Endpoint:
|
5
|
+
# - Problem Reports
|
6
|
+
class Tobacco < Endpoint
|
7
|
+
# @param search [Array<Hash>] Search fields defined in https://open.fda.gov/apis/tobacco/problem/searchable-fields/
|
8
|
+
# @param sort [Array<Hash>] Sort fields defined in https://open.fda.gov/apis/tobacco/problem/searchable-fields/
|
9
|
+
# @param count [Array<Hash>] Count fields defined https://open.fda.gov/apis/tobacco/problem/searchable-fields/
|
10
|
+
# @param skip [Integer] Number of results to skip
|
11
|
+
# @param limit [Integer] Number of results to return
|
12
|
+
# @return Response from the API parsed as JSON
|
13
|
+
def problem_reports(search: [], sort: [], count: [], skip: 0, limit: 1)
|
14
|
+
endpoint = "problem.json"
|
15
|
+
inputs = build_inputs(search: search, sort: sort, count: count, skip: skip, limit: limit)
|
16
|
+
query = build_query(inputs, {}) # TODO: Upload valid fields
|
17
|
+
make_request(endpoint, query)
|
18
|
+
end
|
19
|
+
|
20
|
+
private
|
21
|
+
|
22
|
+
def endpoint_path
|
23
|
+
"/tobacco"
|
24
|
+
end
|
25
|
+
end
|
26
|
+
end
|
data/lib/open_fda_api/version.rb
CHANGED
data/lib/open_fda_api.rb
CHANGED
@@ -1,13 +1,19 @@
|
|
1
1
|
# frozen_string_literal: true
|
2
2
|
|
3
3
|
require_relative "open_fda_api/version"
|
4
|
-
require_relative "open_fda_api/client"
|
5
4
|
|
6
5
|
# A Ruby wrapper for the openFDA API: https://open.fda.gov/apis/
|
7
6
|
module OpenFdaApi
|
8
7
|
class Error < StandardError; end
|
9
8
|
|
10
|
-
|
11
|
-
|
12
|
-
|
9
|
+
autoload :Client, "open_fda_api/client"
|
10
|
+
autoload :Endpoint, "open_fda_api/endpoint"
|
11
|
+
autoload :AnimalAndVeterinary, "open_fda_api/animal_and_veterinary"
|
12
|
+
autoload :Drugs, "open_fda_api/drugs"
|
13
|
+
autoload :Device, "open_fda_api/device"
|
14
|
+
autoload :Food, "open_fda_api/food"
|
15
|
+
autoload :Other, "open_fda_api/other"
|
16
|
+
autoload :Tobacco, "open_fda_api/tobacco"
|
17
|
+
autoload :QueryInputs, "open_fda_api/query_inputs"
|
18
|
+
autoload :QueryBuilder, "open_fda_api/query_builder"
|
13
19
|
end
|
data/open_fda_api.gemspec
CHANGED
@@ -27,7 +27,9 @@ Gem::Specification.new do |spec|
|
|
27
27
|
spec.require_paths = ["lib"]
|
28
28
|
|
29
29
|
# Uncomment to register a new dependency of your gem
|
30
|
-
|
30
|
+
spec.add_dependency "faraday", "~> 1.9"
|
31
|
+
spec.add_dependency "faraday_middleware", "~> 1.2"
|
32
|
+
|
31
33
|
spec.add_development_dependency "pry"
|
32
34
|
|
33
35
|
# For more information and examples about making a new gem, checkout our
|
metadata
CHANGED
@@ -1,15 +1,43 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: open_fda_api
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.0.
|
4
|
+
version: 0.0.13
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Hebron George
|
8
8
|
autorequire:
|
9
9
|
bindir: exe
|
10
10
|
cert_chain: []
|
11
|
-
date: 2022-01-
|
11
|
+
date: 2022-01-27 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
|
+
- !ruby/object:Gem::Dependency
|
14
|
+
name: faraday
|
15
|
+
requirement: !ruby/object:Gem::Requirement
|
16
|
+
requirements:
|
17
|
+
- - "~>"
|
18
|
+
- !ruby/object:Gem::Version
|
19
|
+
version: '1.9'
|
20
|
+
type: :runtime
|
21
|
+
prerelease: false
|
22
|
+
version_requirements: !ruby/object:Gem::Requirement
|
23
|
+
requirements:
|
24
|
+
- - "~>"
|
25
|
+
- !ruby/object:Gem::Version
|
26
|
+
version: '1.9'
|
27
|
+
- !ruby/object:Gem::Dependency
|
28
|
+
name: faraday_middleware
|
29
|
+
requirement: !ruby/object:Gem::Requirement
|
30
|
+
requirements:
|
31
|
+
- - "~>"
|
32
|
+
- !ruby/object:Gem::Version
|
33
|
+
version: '1.2'
|
34
|
+
type: :runtime
|
35
|
+
prerelease: false
|
36
|
+
version_requirements: !ruby/object:Gem::Requirement
|
37
|
+
requirements:
|
38
|
+
- - "~>"
|
39
|
+
- !ruby/object:Gem::Version
|
40
|
+
version: '1.2'
|
13
41
|
- !ruby/object:Gem::Dependency
|
14
42
|
name: pry
|
15
43
|
requirement: !ruby/object:Gem::Requirement
|
@@ -46,9 +74,16 @@ files:
|
|
46
74
|
- bin/setup
|
47
75
|
- lib/open_fda_api.rb
|
48
76
|
- lib/open_fda_api/adverse_events_fields.yml
|
77
|
+
- lib/open_fda_api/animal_and_veterinary.rb
|
49
78
|
- lib/open_fda_api/client.rb
|
79
|
+
- lib/open_fda_api/device.rb
|
50
80
|
- lib/open_fda_api/drugs.rb
|
81
|
+
- lib/open_fda_api/endpoint.rb
|
82
|
+
- lib/open_fda_api/food.rb
|
83
|
+
- lib/open_fda_api/other.rb
|
51
84
|
- lib/open_fda_api/query_builder.rb
|
85
|
+
- lib/open_fda_api/query_inputs.rb
|
86
|
+
- lib/open_fda_api/tobacco.rb
|
52
87
|
- lib/open_fda_api/version.rb
|
53
88
|
- open_fda_api.gemspec
|
54
89
|
homepage: https://github.com/hebron-george/open_fda_api
|