open_ehr 0.6.1 → 0.9.0
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- data/Gemfile +10 -2
- data/Gemfile.lock +58 -18
- data/Guardfile +2 -1
- data/History.txt +10 -3
- data/Manifest.txt +3 -5
- data/README.rdoc +36 -32
- data/Rakefile +1 -1
- data/VERSION +1 -1
- data/bin/adl_validator.rb +84 -0
- data/lib/open_ehr/am/archetype/constraint_model/primitive.rb +11 -7
- data/lib/open_ehr/am/archetype/constraint_model.rb +4 -16
- data/lib/open_ehr/am/archetype/ontology.rb +37 -6
- data/lib/open_ehr/am/archetype.rb +6 -7
- data/lib/open_ehr/am/open_ehr_profile/data_types/text.rb +5 -2
- data/lib/open_ehr/parser/adl.rb +19 -0
- data/lib/open_ehr/parser/adl_grammar.tt +155 -0
- data/lib/open_ehr/parser/adl_parser.rb +48 -0
- data/lib/open_ehr/parser/cadl_grammar.tt +803 -0
- data/lib/open_ehr/parser/dadl.rb +13 -0
- data/lib/open_ehr/parser/dadl_grammar.tt +358 -0
- data/lib/open_ehr/parser/exception.rb +68 -0
- data/lib/open_ehr/parser/scanner/adl_scanner.rb +819 -0
- data/lib/open_ehr/parser/shared_token_grammar.tt +1200 -0
- data/lib/open_ehr/parser/validator.rb +20 -0
- data/lib/open_ehr/parser.rb +16 -12
- data/lib/open_ehr.rb +1 -0
- data/open_ehr.gemspec +364 -0
- data/spec/lib/open_ehr/am/archetype/archetype_spec.rb +7 -2
- data/spec/lib/open_ehr/am/archetype/constraint_model/c_multiple_attribute_spec.rb +0 -6
- data/spec/lib/open_ehr/am/archetype/constraint_model/c_object_spec.rb +10 -10
- data/spec/lib/open_ehr/am/archetype/constraint_model/c_single_attribute_spec.rb +0 -6
- data/spec/lib/open_ehr/am/archetype/constraint_model/primitive/c_boolean_spec.rb +5 -0
- data/spec/lib/open_ehr/am/archetype/constraint_model/primitive/c_date_time_spec.rb +5 -0
- data/spec/lib/open_ehr/am/archetype/constraint_model/primitive/c_duration_spec.rb +5 -0
- data/spec/lib/open_ehr/am/archetype/constraint_model/primitive/c_integer_spec.rb +5 -0
- data/spec/lib/open_ehr/am/archetype/constraint_model/primitive/c_primitive_spec.rb +8 -6
- data/spec/lib/open_ehr/am/archetype/constraint_model/primitive/c_real_spec.rb +7 -2
- data/spec/lib/open_ehr/am/archetype/constraint_model/primitive/c_string_spec.rb +5 -0
- data/spec/lib/open_ehr/am/archetype/constraint_model/primitive/c_time_spec.rb +5 -0
- data/spec/lib/open_ehr/am/archetype/ontology/archetype_ontology_spec.rb +27 -7
- data/spec/lib/open_ehr/am/archetype/ontology/archetype_term_spec.rb +3 -3
- data/spec/lib/open_ehr/parser/adl/adl-test-ENTRY.assumed_types.v1.adl +88 -0
- data/spec/lib/open_ehr/parser/adl/adl-test-ENTRY.basic_types.v1.adl +143 -0
- data/spec/lib/open_ehr/parser/adl/adl-test-ENTRY.basic_types_fail.v1.adl +50 -0
- data/spec/lib/open_ehr/parser/adl/adl-test-ENTRY.most_minimal.v1.adl +27 -0
- data/spec/lib/open_ehr/parser/adl/adl-test-ENTRY.structure_test1.v1.adl +46 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-ACTION.imaging.v1.adl +275 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-ACTION.referral.v1.adl +351 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.auscultation-chest.v1.adl +765 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.auscultation.v1.adl +217 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.dimensions-circumference.v1.adl +134 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.dimensions.v1.adl +241 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.exam-abdomen.v1.adl +321 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.exam-chest.v1.adl +379 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.exam-fetus.v1.adl +577 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.exam-generic-joint.v1.adl +146 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.exam-generic-lymphnode.v1.adl +176 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.exam-generic-mass.v1.adl +221 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.exam-generic.v1.adl +139 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.exam-nervous_system.v1.adl +116 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.exam-uterine_cervix.v1.adl +420 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-CLUSTER.exam-uterus.v1.adl +293 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-COMPOSITION.discharge.v1draft.adl +53 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-COMPOSITION.encounter.v1draft.adl +45 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-EVALUATION.adverse.v1.adl +411 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-INSTRUCTION.medication.v1.adl +88 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-INSTRUCTION.referral.v1.adl +84 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-ITEM_TREE.Laboratory_request.v1.adl +492 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-ITEM_TREE.follow_up.v1draft.adl +94 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-ITEM_TREE.imaging.v1.adl +127 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-ITEM_TREE.medication-formulation.v1.adl +457 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-ITEM_TREE.medication.v1.adl +869 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-ITEM_TREE.referral.v1.adl +494 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-OBSERVATION.apgar.v1.adl +545 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-OBSERVATION.blood_pressure.v1.adl +673 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-OBSERVATION.body_mass_index.v1.adl +166 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-SECTION.findings.v1.adl +47 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-SECTION.reason_for_encounter.v1.adl +51 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-SECTION.summary.v1.adl +52 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-SECTION.vital_signs.v1.adl +54 -0
- data/spec/lib/open_ehr/parser/adl/openEHR-EHR-cadl_sample.v1.adl +9 -0
- data/spec/lib/open_ehr/parser/adl_parser_spec.rb +210 -0
- data/spec/lib/open_ehr/parser/base_spec.rb +19 -0
- data/spec/spec.opts +2 -1
- data/spec/spec_helper.rb +3 -0
- metadata +166 -52
- data/doc/README_rdoc.html +0 -148
- data/doc/created.rid +0 -2
- data/doc/images/brick.png +0 -0
- data/doc/images/brick_link.png +0 -0
- data/doc/images/bug.png +0 -0
- data/doc/images/bullet_black.png +0 -0
- data/doc/images/bullet_toggle_minus.png +0 -0
- data/doc/images/bullet_toggle_plus.png +0 -0
- data/doc/images/date.png +0 -0
- data/doc/images/find.png +0 -0
- data/doc/images/loadingAnimation.gif +0 -0
- data/doc/images/macFFBgHack.png +0 -0
- data/doc/images/package.png +0 -0
- data/doc/images/page_green.png +0 -0
- data/doc/images/page_white_text.png +0 -0
- data/doc/images/page_white_width.png +0 -0
- data/doc/images/plugin.png +0 -0
- data/doc/images/ruby.png +0 -0
- data/doc/images/tag_green.png +0 -0
- data/doc/images/wrench.png +0 -0
- data/doc/images/wrench_orange.png +0 -0
- data/doc/images/zoom.png +0 -0
- data/doc/index.html +0 -54
- data/doc/js/darkfish.js +0 -116
- data/doc/js/jquery.js +0 -32
- data/doc/js/quicksearch.js +0 -114
- data/doc/js/thickbox-compressed.js +0 -10
- data/doc/rdoc.css +0 -706
- data/lib/#open_ehr.rb# +0 -11
@@ -0,0 +1,321 @@
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archetype (adl_version=1.4)
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openEHR-EHR-CLUSTER.exam-abdomen.v1
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specialize
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openEHR-EHR-CLUSTER.exam.v1
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concept
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[at0000.1] -- Examination of the abdomen
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language
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original_language = <[ISO_639-1::en]>
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description
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original_author = <
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["name"] = <"Heather Leslie">
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["organisation"] = <"Ocean Informatics">
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["date"] = <"11/04/2007">
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["email"] = <"heather.leslie@oceaninformatics.biz">
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>
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details = <
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["en"] = <
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language = <[ISO_639-1::en]>
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purpose = <"A cluster for recording findings on physical examination of the abdomen">
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use = <"">
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keywords = <"examination", "physical">
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misuse = <"">
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>
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>
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lifecycle_state = <"Initial">
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other_contributors = <>
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definition
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CLUSTER[at0000.1] matches { -- Examination of the abdomen
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items cardinality matches {0..*; unordered} matches {
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CLUSTER[at0004] occurrences matches {0..1} matches { -- Normal statements
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items cardinality matches {0..*; unordered} matches {
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ELEMENT[at0005] occurrences matches {0..*} matches { -- Normal statement
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value matches {
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DV_TEXT matches {*}
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}
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}
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}
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}
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ELEMENT[at0002] occurrences matches {0..1} matches { -- Clinical description
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value matches {
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DV_TEXT matches {*}
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}
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}
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CLUSTER[at0008] occurrences matches {0..1} matches { -- Findings
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items cardinality matches {0..*; unordered} matches {
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CLUSTER[at0.2] occurrences matches {0..1} matches { -- Abdominal wall
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items cardinality matches {0..*; unordered} matches {
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ELEMENT[at0.3] occurrences matches {0..1} matches { -- Description
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value matches {
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DV_CODED_TEXT matches {
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defining_code matches {[local::]}
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}
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}
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}
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allow_archetype CLUSTER occurrences matches {0..1} matches {
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include
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archetype_id/value matches {/inspection\.v1draft/}
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archetype_id/value matches {/exam-generic-mass\.v1/}
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archetype_id/value matches {/palpation\.v1/}
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archetype_id/value matches {/inspection-skin\.v1draft/}
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archetype_id/value matches {/exam-generic-lymphnode\.v1/}
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}
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}
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}
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CLUSTER[at0.9] occurrences matches {0..1} matches { -- Abdominal Region
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items cardinality matches {0..*; unordered} matches {
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ELEMENT[at0.10] occurrences matches {0..1} matches { -- Region
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value matches {
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DV_CODED_TEXT matches {
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defining_code matches {
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[local::
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at0.11, -- Left upper quadrant
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at0.12, -- Epigastrium
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at0.16, -- Left upper quadrant
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at0.17, -- Right loin
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at0.18, -- Central/peri-umbilical
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at0.19, -- Left loin
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at0.20, -- Right iliac fossa
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at0.21] -- Left iliac fossa
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}
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}
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}
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}
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allow_archetype CLUSTER occurrences matches {0..1} matches {
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include
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archetype_id/value matches {/palpation\.v1/}
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archetype_id/value matches {/percussion\.v1/}
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}
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use_node ELEMENT /items[at0008]/items[at0.2]/items[at0.3]
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}
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}
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CLUSTER[at0.5] occurrences matches {0..1} matches { -- Abdomen Contents
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items cardinality matches {0..*; unordered} matches {
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allow_archetype CLUSTER occurrences matches {0..1} matches {
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include
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archetype_id/value matches {/exam-generic-mass\.v1/}
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archetype_id/value matches {/exam-generic-lympnode\.v1/}
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archetype_id/value matches {/exam-generic\.v1/}
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archetype_id/value matches {/exam\.v1/}
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archetype_id/value matches {/auscultation\.v1/}
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}
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CLUSTER[at0.13] occurrences matches {0..1} matches { -- Organs
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items cardinality matches {0..*; unordered} matches {
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CLUSTER[at0.14] occurrences matches {0..1} matches { -- Liver
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items cardinality matches {0..*; unordered} matches {
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allow_archetype CLUSTER occurrences matches {0..1} matches {
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include
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archetype_id/value matches {/palpation\.v1/}
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archetype_id/value matches {/percussion\.v1/}
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archetype_id/value matches {/dimensions\.v1/}
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archetype_id/value matches {/relative_position_abdomen\.v1draft/}
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archetype_id/value matches {/size\.v1/}
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archetype_id/value matches {/exam-generic-mass\.v1/}
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}
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use_node ELEMENT /items[at0008]/items[at0.2]/items[at0.3]
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}
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}
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CLUSTER[at0.7] occurrences matches {0..1} matches { -- Spleen
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items cardinality matches {0..*; unordered} matches {
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allow_archetype CLUSTER occurrences matches {0..1} matches {
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include
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archetype_id/value matches {/dimensions\.v1/}
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archetype_id/value matches {/exam-generic-mass\.v1/}
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archetype_id/value matches {/exam-generic\.v1/}
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archetype_id/value matches {/exam\.v1/}
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archetype_id/value matches {/palpation\.v1/}
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archetype_id/value matches {/percussion\.v1/}
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archetype_id/value matches {/relative_position_abdomen\.v1draft/}
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archetype_id/value matches {/size\.v1/}
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}
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use_node ELEMENT /items[at0008]/items[at0.2]/items[at0.3]
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}
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}
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CLUSTER[at0.8] occurrences matches {0..1} matches { -- Kidney
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items cardinality matches {0..*; unordered} matches {
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allow_archetype CLUSTER occurrences matches {0..1} matches {
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include
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archetype_id/value matches {/dimensions\.v1/}
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archetype_id/value matches {/exam-generic-mass\.v1/}
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archetype_id/value matches {/exam-generic\.v1/}
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archetype_id/value matches {/exam\.v1/}
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archetype_id/value matches {/palpation\.v1/}
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archetype_id/value matches {/percussion\.v1/}
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archetype_id/value matches {/relative_position_abdomen\.v1draft/}
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}
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use_node ELEMENT /items[at0008]/items[at0.2]/items[at0.3]
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}
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}
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CLUSTER[at0.15] occurrences matches {0..1} matches { -- Bowel
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items cardinality matches {0..*; unordered} matches {
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allow_archetype CLUSTER occurrences matches {0..1} matches {
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include
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archetype_id/value matches {/palpation\.v1/}
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archetype_id/value matches {/exam-generic-mass\.v1/}
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archetype_id/value matches {/exam-generic\.v1/}
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archetype_id/value matches {/exam\.v1/}
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archetype_id/value matches {/percussion\.v1/}
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archetype_id/value matches {/relative_position_abdomen\.v1draft/}
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}
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use_node ELEMENT /items[at0008]/items[at0.2]/items[at0.3]
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}
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}
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}
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}
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use_node ELEMENT /items[at0008]/items[at0.2]/items[at0.3]
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}
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}
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CLUSTER[at0003] occurrences matches {0..1} matches { -- Detail
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items cardinality matches {0..*; unordered} matches {
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allow_archetype CLUSTER occurrences matches {0..1} matches {
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include
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archetype_id/value matches {/exam-generic\.v1/}
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}
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}
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}
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}
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}
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ELEMENT[at0006] occurrences matches {0..*} matches { -- Image
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value matches {
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DV_MULTIMEDIA matches {
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media_type matches {
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[openEHR::
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426,
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427,
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429]
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}
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}
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}
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}
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}
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}
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ontology
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term_definitions = <
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["en"] = <
|
198
|
+
items = <
|
199
|
+
["at0.10"] = <
|
200
|
+
description = <"*">
|
201
|
+
text = <"Region">
|
202
|
+
>
|
203
|
+
["at0.11"] = <
|
204
|
+
description = <"*">
|
205
|
+
text = <"Left upper quadrant">
|
206
|
+
>
|
207
|
+
["at0.12"] = <
|
208
|
+
description = <"*">
|
209
|
+
text = <"Epigastrium">
|
210
|
+
>
|
211
|
+
["at0.13"] = <
|
212
|
+
description = <"*">
|
213
|
+
text = <"Organs">
|
214
|
+
>
|
215
|
+
["at0.14"] = <
|
216
|
+
description = <"*">
|
217
|
+
text = <"Liver">
|
218
|
+
>
|
219
|
+
["at0.15"] = <
|
220
|
+
description = <"*">
|
221
|
+
text = <"Bowel">
|
222
|
+
>
|
223
|
+
["at0.16"] = <
|
224
|
+
description = <"*">
|
225
|
+
text = <"Left upper quadrant">
|
226
|
+
>
|
227
|
+
["at0.17"] = <
|
228
|
+
description = <"*">
|
229
|
+
text = <"Right loin">
|
230
|
+
>
|
231
|
+
["at0.18"] = <
|
232
|
+
description = <"*">
|
233
|
+
text = <"Central/peri-umbilical">
|
234
|
+
>
|
235
|
+
["at0.19"] = <
|
236
|
+
description = <"*">
|
237
|
+
text = <"Left loin">
|
238
|
+
>
|
239
|
+
["at0.2"] = <
|
240
|
+
description = <"*">
|
241
|
+
text = <"Abdominal wall">
|
242
|
+
>
|
243
|
+
["at0.20"] = <
|
244
|
+
description = <"*">
|
245
|
+
text = <"Right iliac fossa">
|
246
|
+
>
|
247
|
+
["at0.21"] = <
|
248
|
+
description = <"*">
|
249
|
+
text = <"Left iliac fossa">
|
250
|
+
>
|
251
|
+
["at0.22"] = <
|
252
|
+
description = <"*">
|
253
|
+
text = <"New element">
|
254
|
+
>
|
255
|
+
["at0.23"] = <
|
256
|
+
description = <"Clinical description of finding">
|
257
|
+
text = <"Description">
|
258
|
+
>
|
259
|
+
["at0.3"] = <
|
260
|
+
description = <"Clincial description of findings">
|
261
|
+
text = <"Description">
|
262
|
+
>
|
263
|
+
["at0.4"] = <
|
264
|
+
description = <"Shape of abdomen">
|
265
|
+
text = <"Shape">
|
266
|
+
>
|
267
|
+
["at0.5"] = <
|
268
|
+
description = <"*">
|
269
|
+
text = <"Abdomen Contents">
|
270
|
+
>
|
271
|
+
["at0.6"] = <
|
272
|
+
description = <"Clinical description">
|
273
|
+
text = <"Description">
|
274
|
+
>
|
275
|
+
["at0.7"] = <
|
276
|
+
description = <"*">
|
277
|
+
text = <"Spleen">
|
278
|
+
>
|
279
|
+
["at0.8"] = <
|
280
|
+
description = <"*">
|
281
|
+
text = <"Kidney">
|
282
|
+
>
|
283
|
+
["at0.9"] = <
|
284
|
+
description = <"*">
|
285
|
+
text = <"Abdominal Region">
|
286
|
+
>
|
287
|
+
["at0000"] = <
|
288
|
+
description = <"Basic examination cluster for describing findings on physical examination when there is no named focus of examination">
|
289
|
+
text = <"Examination">
|
290
|
+
>
|
291
|
+
["at0000.1"] = <
|
292
|
+
description = <"For recording findings on physical examination of the abdomen">
|
293
|
+
text = <"Examination of the abdomen">
|
294
|
+
>
|
295
|
+
["at0002"] = <
|
296
|
+
description = <"Textural description of the part examined">
|
297
|
+
text = <"Clinical description">
|
298
|
+
>
|
299
|
+
["at0003"] = <
|
300
|
+
description = <"More focused examination findings">
|
301
|
+
text = <"Detail">
|
302
|
+
>
|
303
|
+
["at0004"] = <
|
304
|
+
description = <"A group of statements about the normality of the examination">
|
305
|
+
text = <"Normal statements">
|
306
|
+
>
|
307
|
+
["at0005"] = <
|
308
|
+
description = <"A specific statement of normality">
|
309
|
+
text = <"Normal statement">
|
310
|
+
>
|
311
|
+
["at0006"] = <
|
312
|
+
description = <"Drawing or image of the area examined">
|
313
|
+
text = <"Image">
|
314
|
+
>
|
315
|
+
["at0008"] = <
|
316
|
+
description = <"Clinical findings">
|
317
|
+
text = <"Findings">
|
318
|
+
>
|
319
|
+
>
|
320
|
+
>
|
321
|
+
>
|