ontomde-core 1.0.2 → 1.0.4

data/lib/ontomde-core/custom_method_missing.rb

@@ -1,53 +1,52 @@
-# Overrides standard ruby method_missing interceptor.
-# NOTE:
-#   This is a workaround for standard method_missing 
-#   generates very high CPU usage
-#   when a significant model is loaded in memory.
-#:include: ../shared/license.rdoc
-
-
-def method_missing(methId,args=nil)
-		msg=respond_to?(:rdf_uri) ? "#{rdf_uri}" : "nil"
-		log.error { "method #{methId} not available for object of class #{self.class.name}, (uri=#{msg})(to_s=#{self})" }
-
-		if msg=="ukb_null" 
-			log.error { <<-END 
-********** INVALID MODEL DETECTED **********
-********** INVALID MODEL DETECTED **********
-**** An invalid source model was used (an ukb_null was found).
-**** Probable cause is that you are using a RSM modeler, and 
-**** one of your model contains an invalid reference somewhere.
-****
-**** Because RSM does not tell you where this error is located,
-**** you have to use your .nt export file :
-****
-**** 1) open .nt export file with a text editor.
-**** 2) locate <http://kb#null> string.
-**** 3) locate left member refering to this null element.
-**** 4) This element is the key of RSM invalid element.
-**** 5) Locate this element in RSM and fix it (or delete it).
-**** 6) Re-export your model and check for null uris.
-****
-********** INVALID MODEL DETECTED **********
-		END
-			}
-		end
-
-		log.debug {
-			msg=""
-			self.methods.sort{|a,b| a<=>b}.each {|m|
-				msg="#{msg}, #{m}"
-			}
-			"Available methods are: #{msg}" 
-		}
-
-		#self.included_modules.each { |m| 
-		#	#puts "include #{m}"
-		#	}
-		puts "end of custom method_missing" 
-		#TODO: l'appel au stock method_missing genere des temps de traitements infinis. (cpu a 100%, conso memoire enorme)
-		#super
-		puts "exiting"
-		throw NoMethodError.new("method missing '#{methId}' for object '#{self.class.name}'",methId,args)
-		#exit
-end
+# Overrides standard ruby method_missing interceptor.
+# NOTE:
+#   This is a workaround for standard method_missing
+#   generates very high CPU usage
+#   when a significant model is loaded in memory.
+
+
+def method_missing(methId,args=nil)
+  msg=respond_to?(:rdf_uri) ? "#{rdf_uri}" : "nil"
+  log.error { "method #{methId} not available for object of class #{self.class.name}, (uri=#{msg})(to_s=#{self})" }
+
+  if msg=="ukb_null"
+    log.error { <<END
+********** INVALID MODEL DETECTED **********
+********** INVALID MODEL DETECTED **********
+**** An invalid source model was used (an ukb_null was found).
+**** Probable cause is that you are using a RSM modeler, and
+**** one of your model contains an invalid reference somewhere.
+****
+**** Because RSM does not tell you where this error is located,
+**** you have to use your .nt export file :
+****
+**** 1) open .nt export file with a text editor.
+**** 2) locate <http://kb#null> string.
+**** 3) locate left member refering to this null element.
+**** 4) This element is the key of RSM invalid element.
+**** 5) Locate this element in RSM and fix it (or delete it).
+**** 6) Re-export your model and check for null uris.
+****
+********** INVALID MODEL DETECTED **********
+END
+    }
+  end
+
+  log.debug {
+    msg=""
+    self.methods.sort{|a,b| a<=>b}.each {|m|
+      msg="#{msg}, #{m}"
+    }
+    "Available methods are: #{msg}"
+  }
+
+  #self.included_modules.each { |m|
+  #	#puts "include #{m}"
+  #	}
+  puts "end of custom method_missing"
+  #TODO: l'appel au stock method_missing genere des temps de traitements infinis. (cpu a 100%, conso memoire enorme)
+  #super
+  puts "exiting"
+  throw NoMethodError.new("method missing '#{methId}' for object '#{self.class.name}'",methId,args)
+  #exit
+end

data/lib/ontomde-core/delayed.rb

@@ -1,10 +1,10 @@
-class Delayed2 
-	def initialize(&b)
-		@b=b
-	end	
-	def to_s
-		return @b.call 
-	end
+class Delayed2
+  def initialize(&b)
+    @b=b
+  end
+  def to_s
+    return @b.call
+  end
 end
 
 #Example usage:
@@ -12,8 +12,8 @@ end
 #c=mtk_delay { i + 5 }
 #i=35
 #puts  c.to_s
-def mtk_delay (&block) 
-	return Delayed2.new(&block)
+def mtk_delay (&block)
+  return Delayed2.new(&block)
 end
 
 

data/lib/ontomde-core/demoInstaller.rb

@@ -1,32 +1,32 @@
 module DemoInstaller
-	def proceed(target,source,banner)
-		options = { }
-		options[:target]="#{target}" 
-		OptionParser.new do |opts|
-			opts.banner =banner +<<END
+  def proceed(target,source,banner)
+    options = { }
+    options[:target]="#{target}"
+    OptionParser.new do |opts|
+      opts.banner =banner +<<END
 
 Command syntax:
 ----------
 END
-			opts.on("-t","--target DIRECTORY","","target directory where demo project will be installed","default: --target #{options[:target]}" ) do |v|
-				options[:target] = v
-			end
-	
-			
-			# No argument, shows at tail.  This will print an options summary.
-			# Try it and see!
-			opts.on_tail("-h", "--help", "Show this message") do
-				puts opts
-				exit
-			end
-		end.parse!
+      opts.on("-t","--target DIRECTORY","","target directory where demo project will be installed","default: --target #{options[:target]}" ) do |v|
+        options[:target] = v
+      end
 
-		if File.exist?(options[:target])
-			puts "WARNING: File already exists (#{options[:target]})"
-			puts "WARNING: Copy aborted"
-		else
-			cp_r("#{source}", options[:target] ) 
-			puts "INFO: Project created in #{options[:target]}"
-		end
-	end
+
+      # No argument, shows at tail.  This will print an options summary.
+      # Try it and see!
+      opts.on_tail("-h", "--help", "Show this message") do
+        puts opts
+        exit
+      end
+    end.parse!
+
+    if File.exist?(options[:target])
+      puts "WARNING: File already exists (#{options[:target]})"
+      puts "WARNING: Copy aborted"
+    else
+      cp_r("#{source}", options[:target] )
+      puts "INFO: Project created in #{options[:target]}"
+    end
+  end
 end

data/lib/ontomde-core/exceptions.rb

@@ -1,28 +1,27 @@
-# Core exceptions class
-#:include: ../shared/license.rdoc
-
-# Generic use exception.
-class Warning  < RuntimeError
-  def initialize()
-  end
-end
-
-# Exception raised when an URI is not found in current model. 
-class WarningURIundefined  < RuntimeError
-  attr_reader :uri
-  def initialize(uri)
-	  @uri=uri
-  end
-end
-
-# Exception raised when a ressources claims to be of a type not defined in currently loaded metamodels.
-class WarningRubyTypeUndefined  < RuntimeError
-  attr_reader :uri,:res
-  def initialize(uri,res)
-	  @res=res
-	  @uri=uri
-  end
-end
-
-class WarningUnknownFileType  < RuntimeError
-end
+# Core exceptions class
+
+# Generic use exception.
+class Warning  < RuntimeError
+  def initialize()
+  end
+end
+
+# Exception raised when an URI is not found in current model.
+class WarningURIundefined  < RuntimeError
+  attr_reader :uri
+  def initialize(uri)
+    @uri=uri
+  end
+end
+
+# Exception raised when a ressources claims to be of a type not defined in currently loaded metamodels.
+class WarningRubyTypeUndefined  < RuntimeError
+  attr_reader :uri,:res
+  def initialize(uri,res)
+    @res=res
+    @uri=uri
+  end
+end
+
+class WarningUnknownFileType  < RuntimeError
+end

data/lib/ontomde-core/fileLoader.rb

@@ -1,163 +1,191 @@
-#:include: ../shared/license.rdoc
-
-class NTriple ; end
-
-class NTripleFile < NTriple
-	attr_reader :line
-	def line=(_line)
-		@line=_line
-		@about_uri=@predicat_uri=@value_uri=@value_litteral=nil
-		@split=@line.split(" ",3)
-	end
-
-	def about_uri
-		@about_uri=urialias(@split[0]) if !@about_uri
-		return @about_uri
-	end
-	def predicat_uri
-		@predicat_uri=urialias(@split[1]) if !@predicat_uri
-		return @predicat_uri
-	end
-	def value_uri
-		@value_uri=urialias(@split[2]) if ! @value_uri
-		return @value_uri
-	end
-	def value_litteral
-		@value_litteral=@split[2][1,@split[2].length-5] if !@value_literral
-		return @value_litteral
-	end
-	
-	def valueIsReference?
-		case @split[2][0]
-			when 60 then return true
-			when 34 then return false
-			else raise Warning.new,"Bad ntriple detected"
-		end
-	end
-
-	COMMENT_SIGNATURE="#"[0]
-	def isComment?
-		return	@line[0]==COMMENT_SIGNATURE
-	end
-	
-
-	def isOntoMDXHeader?
-		return @line.to_s=="#!ontomdx\n"
-	end
-end
-
-module Mrdf_Model 
-	def loadMetaModelFromFile(fileName,ignoreHeader=false)
-		@updateCount=@updateCount+1
-		raise Exception.new("nil fileName passed to loadMetaModelFromFile") if fileName.nil? 
-		m=fileName+".rb"
-		#log.debug "m=#{m}"
-		if( File.exists?(m) && File.mtime(m) > File.mtime(fileName) )
-			log.debug "Using cache in #{m}"
-			require(m)
-			loadModelFromFile(fileName,ignoreHeader)
-		else
-			log.debug "Generating cache in #{m}"
-			loadModelFromFile(fileName,ignoreHeader)
-			self.generateClassesFromMetamodel(m)
-		end
-	end
-
-	def loadModelFromFile (srcFileName,ignoreHeader=false)
-		fileName=translateToNt(srcFileName)
-		@updateCount=@updateCount+1
-		#Crdf_Resource.new(self,"xx").initUpdate
-		[false,true].each { |modeData|
-			begin 
-			File.open(fileName,"r") { |aFile|
-					parseModelStream(aFile,modeData,ignoreHeader)
-					}
-			rescue Exception => e 
-					raise Exception.new(e.message+"ERROR *** current file is: \"#{fileName}\"\nERROR ***\n")
-			end
-		}
-	end
-
-	def parseModelStream(stream,modeData,ignoreHeader=false)
-		aFile=stream
-		i=0
-		nt=NTripleFile.new()
-		aFile.each_line {
-			|nt.line|  
-			begin	
-			i=i+1
-
-			if(!ignoreHeader)
-				ignoreHeader=true
-				next if nt.isOntoMDXHeader?
-				p="\nERROR *** "
-				raise Exception.new("#{p}#{p}ontomdx was given a model file without#{p}a valid ontomdx plugin file header.#{p}If you have used a model file created by a modeler plugin,#{p}upgrade your plugin.#{p}Il you have used a plain RDF or RDFS file,#{p}specify ignoreHeader=true when loading model with loadModel.#{p}\n")
-			end
-
-			next if nt.isComment?
-			parse(nt,modeData)
-			rescue WarningRubyTypeUndefined => z
-				log.error "WARNING ["+(modeData ? "data":"res")+" :nt.line "+i.to_s+", "+z.to_s+", Will create a default type. Possible discrepancies if defined later on. In case of problem, Consider bootstraping]:"+nt.line
-				#log.debug "z.res=#{z.res}"
-				z.res.createRubyClassMinimal(self)
-				i=i-1
-				retry
-
-			rescue WarningURIundefined => z
-				log.error "WARNING ["+(modeData ? "data":"res")+" :line "+i.to_s+", "+z.to_s+",Will create a default entry]:"+nt.line
-				#log.debug "z.uri=#{z.uri}"
-				Crdf_Resource.new(self,z.uri)
-				#parse(nt.line,modeData)
-				i=i-1
-				retry
-		        rescue Warning => w
-				log.error "WARNING ["+(modeData ? "data":"res")+" :line "+i.to_s+", "+w.to_s+"]:"+nt.line
-
-       			end
-			}
-	end
-
-# moved to ontomde-redland-win
-#	WIN_PATH_RAPPER=File.expand_path("#{File.dirname(__FILE__)}/../../dist/redland-1.0.3-Win32/rapper.exe").tr('/','\\\\')
-
-	PLATFORM_IS_UNIX=!(RUBY_PLATFORM.index("inux").nil?)
-	def rapperRun(param)
-		if PLATFORM_IS_UNIX
-			cmd="rapper "+param
-		else
-			cmd='"'+WIN_PATH_RAPPER+'"'+param
-		end
-		return if system(cmd)
-		raise Exception.new("\n***\n***Error running command\n***\n***#{cmd}\n***\n")
-		
-	end
-	def translateToNt(srcFileName)
-		return srcFileName if ! (srcFileName=~/.rdfs*$/ )
-
-		fileName="#{srcFileName}.cache.deleteMe.nt"
-		if( File.exists?(fileName) && File.mtime(fileName) > File.mtime(srcFileName) )
-			log.debug "INFO:Using cache in #{fileName}"
-		else
-			raise "Blanc dans nom de fichier non supportes sous windows" if fileName.include?(" ")
-			if PLATFORM_IS_UNIX
-				param=' -q -o ntriples -i rdfxml  '+srcFileName+' > '+fileName
-			else
-				param=' -q -o ntriples -i rdfxml  '+srcFileName.tr('/','\\\\')+' > '+fileName.tr('/','\\\\')+''
-			end
-			rapperRun(param)
-		end
-		return fileName
-	end
-
-	def translateToXML(srcFileName,fileName)
-		raise "Blanc dans nom de fichier non supportes sous windows" if fileName.include?(" ") || srcFileName.include?(" ")
-			if PLATFORM_IS_UNIX
-			param=' -q -i ntriples -o rdfxml  '+srcFileName+' > '+fileName+''
-		else
-			param=' -q -i ntriples -o rdfxml  '+srcFileName.tr('/','\\\\')+' > '+fileName.tr('/','\\\\')+''
-		end
-		rapperRun(param)
-		return fileName
-	end
-
-end
+
+class NTriple ; end
+
+class NTripleFile < NTriple
+  attr_reader :line
+  attr :litOffset
+  
+  def initialize
+    super
+    @litOffset=nil
+  end
+  
+  def line=(_line)
+    @line=_line
+    @about_uri=@predicat_uri=@value_uri=@value_litteral=nil
+    @split=@line.split(" ",3)
+  end
+
+  def about_uri
+    @about_uri=urialias(@split[0]) if !@about_uri
+    return @about_uri
+  end
+  def predicat_uri
+    @predicat_uri=urialias(@split[1]) if !@predicat_uri
+    return @predicat_uri
+  end
+  def value_uri
+    @value_uri=urialias(@split[2]) if ! @value_uri
+    return @value_uri
+  end
+  def value_litteral
+    @value_litteral=@split[2][1,@split[2].length-lineOffset] if !@value_litteral
+    return @value_litteral
+  end
+  #return number of chars to be deleted at then end of line.
+  #number depend on file type CR/LF and on platform (ruby, jruby, ...)
+  #This value should be computed once per file.
+  #(A File should not mix CR/LF lines with CR lines)
+  def lineOffset
+    return @litOffset unless @litOffset.nil?
+    i=@split[2].rindex(".")
+    l=@split[2].length
+    @litOffset=l-i+3
+    return @litOffset
+  end
+
+  def valueIsReference?
+    case @split[2][0]
+    when 60 then return true
+    when 34 then return false
+    else raise Warning.new,"Bad ntriple detected"
+    end
+  end
+
+  COMMENT_SIGNATURE="#"[0]
+  def isComment?
+    return	@line[0]==COMMENT_SIGNATURE
+  end
+
+
+  def isOntoMDXHeader?
+    return @line.to_s=="#!ontomdx\n"
+  end
+end
+
+module Mrdf_Model
+  def loadMetaModelFromFile(fileName,ignoreHeader=false)
+    @updateCount=@updateCount+1
+    raise Exception.new("nil fileName passed to loadMetaModelFromFile") if fileName.nil?
+    m=fileName+".rb"
+    #log.debug "m=#{m}"
+    #TODO: cacheMetaModelFile forced to false
+    #      because range handling broke it
+    if( context[:cacheMetaModelFile,false] && File.exists?(m) && File.mtime(m) > File.mtime(fileName) )
+      log.debug "Using cache in #{m}"
+      require(m)
+      loadModelFromFile(fileName,ignoreHeader)
+    else
+      log.debug "Generating cache in #{m}"
+      loadModelFromFile(fileName,ignoreHeader)
+      self.generateClassesFromMetamodel(m)
+    end
+  end
+
+  def loadModelFromFile (srcFileName,ignoreHeader=false)
+    fileName=translateToNt(srcFileName)
+    @updateCount=@updateCount+1
+    #Crdf_Resource.new(self,"xx").initUpdate
+    [false,true].each { |modeData|
+      begin
+        File.open(fileName,"r") { |aFile|
+          parseModelStream(aFile,modeData,ignoreHeader)
+        }
+      rescue Exception => e
+        raise Exception.new(e.message+"ERROR *** current file is: \"#{fileName}\"\nERROR ***\n")
+      end
+    }
+  end
+
+  def parseModelStream(stream,modeData,ignoreHeader=false)
+    aFile=stream
+    i=0
+    nt=NTripleFile.new()
+    aFile.each_line {
+      |nt.line|
+      begin
+        i=i+1
+
+        if(!ignoreHeader)
+          ignoreHeader=true
+          next if nt.isOntoMDXHeader?
+          p="\nERROR *** "
+          raise Exception.new("#{p}#{p}ontomdx was given a model file without#{p}a valid ontomdx plugin file header.#{p}If you have used a model file created by a modeler plugin,#{p}upgrade your plugin.#{p}Il you have used a plain RDF or RDFS file,#{p}specify ignoreHeader=true when loading model with loadModel.#{p}\n")
+        end
+
+        next if nt.isComment?
+        parse(nt,modeData)
+      rescue WarningRubyTypeUndefined => z
+        log.error "WARNING ["+(modeData ? "data":"res")+" :nt.line "+i.to_s+", "+z.to_s+", Will create a default type. Possible discrepancies if defined later on. In case of problem, Consider bootstraping]:"+nt.line
+        #log.debug "z.res=#{z.res}"
+        z.res.createRubyClassMinimal(self)
+        i=i-1
+        retry
+
+      rescue WarningURIundefined => z
+        log.error "WARNING ["+(modeData ? "data":"res")+" :line "+i.to_s+", "+z.to_s+",Will create a default entry]:"+nt.line
+        #log.debug "z.uri=#{z.uri}"
+        Crdf_Resource.new(self,z.uri)
+        #parse(nt.line,modeData)
+        i=i-1
+        retry
+      rescue Warning => w
+        log.error "WARNING ["+(modeData ? "data":"res")+" :line "+i.to_s+", "+w.to_s+"]:"+nt.line
+
+      end
+    }
+  end
+
+  PLATFORM_IS_JAVA=!(RUBY_PLATFORM.index("java").nil?)
+  OS_IS_WINDOWS=!(ENV['OS'].index("Windows").nil?)
+  
+  puts(%{O/S detected: #{OS_IS_WINDOWS ? "WINDOWS" : "*nix"}})
+  puts(%{Ruby platform detected: #{PLATFORM_IS_JAVA ? "Java" : "C"}})
+  
+  def rapperRun(param)
+    if ! OS_IS_WINDOWS
+      #we are not under windows
+      #built in rapper cannot be used (it is for windows)
+      #we use rapper available in path.
+      cmd="rapper "+param
+    elsif PLATFORM_IS_JAVA
+      #We are under windows but under jruby
+      cmd=WIN_PATH_RAPPER+" "+param
+    else
+      #We are under windows but under Matz Ruby Implementation (MRI)
+      cmd='"'+WIN_PATH_RAPPER+'"'+param
+    end
+    return if system(cmd)
+    raise Exception.new("\n***\n***Error running command\n***\n***#{cmd}\n***\n")
+
+  end
+  def translateToNt(srcFileName)
+    return srcFileName if ! (srcFileName=~/.rdfs*$/ )
+
+    fileName="#{srcFileName}.cache.deleteMe.nt"
+    if( context[:useTranslateToNtCache,false] && File.exists?(fileName) && File.mtime(fileName) > File.mtime(srcFileName) )
+      #log.debug "INFO:Using cache in #{fileName}"
+    else
+      raise "Blanc dans nom de fichier non supportes sous windows" if fileName.include?(" ")
+      if !OS_IS_WINDOWS
+        param=' -q -o ntriples -i rdfxml  '+srcFileName+' > '+fileName
+      else
+        param=' -q -o ntriples -i rdfxml  '+srcFileName.tr('/','\\\\')+' > '+fileName.tr('/','\\\\')+''
+      end
+      rapperRun(param)
+    end
+    return fileName
+  end
+
+  def translateToXML(srcFileName,fileName)
+    raise "Blanc dans nom de fichier non supportes sous windows" if fileName.include?(" ") || srcFileName.include?(" ")
+    if !OS_IS_WINDOWS
+      param=' -q -i ntriples -o rdfxml  '+srcFileName+' > '+fileName+''
+    else
+      param=' -q -i ntriples -o rdfxml  '+srcFileName.tr('/','\\\\')+' > '+fileName.tr('/','\\\\')+''
+    end
+    rapperRun(param)
+    return fileName
+  end
+
+end