onc_certification_g10_test_kit 3.1.0 → 3.2.0

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Files changed (37) hide show
  1. checksums.yaml +4 -4
  2. data/lib/inferno/terminology/expected_manifest.yml +36 -693
  3. data/lib/inferno/terminology/fhir_package_manager.rb +16 -14
  4. data/lib/inferno/terminology/loader.rb +24 -2
  5. data/lib/inferno/terminology/tasks/download_umls.rb +2 -1
  6. data/lib/inferno/terminology/tasks/expand_value_set_to_file.rb +1 -1
  7. data/lib/inferno/terminology/tasks/run_umls_jar.rb +2 -1
  8. data/lib/inferno/terminology/value_set.rb +58 -56
  9. data/lib/onc_certification_g10_test_kit/bulk_data_group_export_stu1.rb +2 -0
  10. data/lib/onc_certification_g10_test_kit/bulk_data_group_export_validation.rb +7 -4
  11. data/lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb +2 -11
  12. data/lib/onc_certification_g10_test_kit/configuration_checker.rb +22 -0
  13. data/lib/onc_certification_g10_test_kit/g10_options.rb +46 -0
  14. data/lib/onc_certification_g10_test_kit/incorrectly_permitted_tls_versions_messages_setup_test.rb +34 -0
  15. data/lib/onc_certification_g10_test_kit/limited_scope_grant_test.rb +3 -1
  16. data/lib/onc_certification_g10_test_kit/multi_patient_api_stu1.rb +11 -0
  17. data/lib/onc_certification_g10_test_kit/multi_patient_api_stu2.rb +10 -0
  18. data/lib/onc_certification_g10_test_kit/onc_program_procedure.yml +1 -0
  19. data/lib/onc_certification_g10_test_kit/profile_selector.rb +32 -24
  20. data/lib/onc_certification_g10_test_kit/resource_access_test.rb +1 -2
  21. data/lib/onc_certification_g10_test_kit/restricted_resource_type_access_group.rb +2 -2
  22. data/lib/onc_certification_g10_test_kit/short_id_manager.rb +46 -0
  23. data/lib/onc_certification_g10_test_kit/short_id_map.yml +1536 -0
  24. data/lib/onc_certification_g10_test_kit/single_patient_api_group.rb +4 -0
  25. data/lib/onc_certification_g10_test_kit/single_patient_us_core_4_api_group.rb +4 -0
  26. data/lib/onc_certification_g10_test_kit/single_patient_us_core_5_api_group.rb +4 -0
  27. data/lib/onc_certification_g10_test_kit/smart_app_launch_invalid_aud_group.rb +2 -2
  28. data/lib/onc_certification_g10_test_kit/smart_ehr_practitioner_app_group.rb +58 -6
  29. data/lib/onc_certification_g10_test_kit/smart_limited_app_group.rb +3 -2
  30. data/lib/onc_certification_g10_test_kit/smart_scopes_test.rb +4 -2
  31. data/lib/onc_certification_g10_test_kit/smart_standalone_patient_app_group.rb +57 -4
  32. data/lib/onc_certification_g10_test_kit/unrestricted_resource_type_access_group.rb +7 -4
  33. data/lib/onc_certification_g10_test_kit/version.rb +1 -1
  34. data/lib/onc_certification_g10_test_kit/visual_inspection_and_attestations_group.rb +52 -2
  35. data/lib/onc_certification_g10_test_kit/well_known_capabilities_test.rb +3 -1
  36. data/lib/onc_certification_g10_test_kit.rb +25 -20
  37. metadata +12 -8
data/lib/inferno/terminology/expected_manifest.yml CHANGED
@@ -1,10 +1,4 @@
1
1
  ---
2
- - :url: http://hl7.org/fhir/ValueSet/languages
3
- :file: hl7_org_fhir_ValueSet_languages.msgpack
4
- :count: 56
5
- :type: bloom
6
- :code_systems:
7
- - urn:ietf:bcp:47
8
2
  - :url: http://hl7.org/fhir/ValueSet/allergyintolerance-clinical
9
3
  :file: hl7_org_fhir_ValueSet_allergyintolerance-clinical.msgpack
10
4
  :count: 3
@@ -35,19 +29,6 @@
35
29
  :type: bloom
36
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  :code_systems:
37
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  - http://hl7.org/fhir/allergy-intolerance-criticality
38
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-allergy-substance
39
- :file: hl7_org_fhir_us_core_ValueSet_us-core-allergy-substance.msgpack
40
- :count: 765
41
- :type: bloom
42
- :code_systems:
43
- - http://www.nlm.nih.gov/research/umls/rxnorm
44
- - http://snomed.info/sct
45
- - :url: http://hl7.org/fhir/ValueSet/clinical-findings
46
- :file: hl7_org_fhir_ValueSet_clinical-findings.msgpack
47
- :count: 158602
48
- :type: bloom
49
- :code_systems:
50
- - http://snomed.info/sct
51
32
  - :url: http://hl7.org/fhir/ValueSet/reaction-event-severity
52
33
  :file: hl7_org_fhir_ValueSet_reaction-event-severity.msgpack
53
34
  :count: 3
@@ -90,14 +71,6 @@
90
71
  :type: bloom
91
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  :code_systems:
92
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  - http://hl7.org/fhir/care-team-status
93
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-careteam-provider-roles
94
- :file: hl7_org_fhir_us_core_ValueSet_us-core-careteam-provider-roles.msgpack
95
- :count: 1731
96
- :type: bloom
97
- :code_systems:
98
- - http://nucc.org/provider-taxonomy
99
- - http://snomed.info/sct
100
- - urn:oid:2.16.840.1.113883.6.101
101
74
  - :url: http://hl7.org/fhir/ValueSet/condition-clinical
102
75
  :file: hl7_org_fhir_ValueSet_condition-clinical.msgpack
103
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  :count: 6
@@ -110,28 +83,6 @@
110
83
  :type: bloom
111
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  :code_systems:
112
85
  - http://terminology.hl7.org/CodeSystem/condition-ver-status
113
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-condition-category
114
- :file: hl7_org_fhir_us_core_ValueSet_us-core-condition-category.msgpack
115
- :count: 4
116
- :type: bloom
117
- :code_systems:
118
- - http://terminology.hl7.org/CodeSystem/condition-category
119
- - http://hl7.org/fhir/us/core/CodeSystem/condition-category
120
- - http://snomed.info/sct
121
- - :url: http://hl7.org/fhir/ValueSet/condition-severity
122
- :file: hl7_org_fhir_ValueSet_condition-severity.msgpack
123
- :count: 3
124
- :type: bloom
125
- :code_systems:
126
- - http://snomed.info/sct
127
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-condition-code
128
- :file: hl7_org_fhir_us_core_ValueSet_us-core-condition-code.msgpack
129
- :count: 297482
130
- :type: bloom
131
- :code_systems:
132
- - http://snomed.info/sct
133
- - http://hl7.org/fhir/sid/icd-10-cm
134
- - http://hl7.org/fhir/sid/icd-9-cm
135
86
  - :url: http://hl7.org/fhir/ValueSet/udi-entry-type
136
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  :file: hl7_org_fhir_ValueSet_udi-entry-type.msgpack
137
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  :count: 6
@@ -144,48 +95,18 @@
144
95
  :type: bloom
145
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  :code_systems:
146
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  - http://hl7.org/fhir/device-status
147
- - :url: http://hl7.org/fhir/ValueSet/device-status-reason
148
- :file: hl7_org_fhir_ValueSet_device-status-reason.msgpack
149
- :count: 8
150
- :type: bloom
151
- :code_systems:
152
- - http://terminology.hl7.org/CodeSystem/device-status-reason
153
98
  - :url: http://hl7.org/fhir/ValueSet/device-nametype
154
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  :file: hl7_org_fhir_ValueSet_device-nametype.msgpack
155
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  :count: 6
156
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  :type: bloom
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  :code_systems:
158
103
  - http://hl7.org/fhir/device-nametype
159
- - :url: http://hl7.org/fhir/ValueSet/device-kind
160
- :file: hl7_org_fhir_ValueSet_device-kind.msgpack
161
- :count: 16557
162
- :type: bloom
163
- :code_systems:
164
- - http://snomed.info/sct
165
104
  - :url: http://hl7.org/fhir/ValueSet/diagnostic-report-status
166
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  :file: hl7_org_fhir_ValueSet_diagnostic-report-status.msgpack
167
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  :count: 10
168
107
  :type: bloom
169
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  :code_systems:
170
109
  - http://hl7.org/fhir/diagnostic-report-status
171
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-diagnosticreport-category
172
- :file: hl7_org_fhir_us_core_ValueSet_us-core-diagnosticreport-category.msgpack
173
- :count: 3
174
- :type: bloom
175
- :code_systems:
176
- - http://loinc.org
177
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-diagnosticreport-report-and-note-codes
178
- :file: hl7_org_fhir_us_core_ValueSet_us-core-diagnosticreport-report-and-note-codes.msgpack
179
- :count: 24810
180
- :type: bloom
181
- :code_systems:
182
- - http://loinc.org
183
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-diagnosticreport-lab-codes
184
- :file: hl7_org_fhir_us_core_ValueSet_us-core-diagnosticreport-lab-codes.msgpack
185
- :count: 57824
186
- :type: bloom
187
- :code_systems:
188
- - http://loinc.org
189
110
  - :url: http://hl7.org/fhir/ValueSet/document-reference-status
190
111
  :file: hl7_org_fhir_ValueSet_document-reference-status.msgpack
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112
  :count: 3
@@ -200,113 +121,35 @@
200
121
  - http://hl7.org/fhir/composition-status
201
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  - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-documentreference-type
202
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  :file: hl7_org_fhir_us_core_ValueSet_us-core-documentreference-type.msgpack
203
- :count: 10602
124
+ :count: 11042
204
125
  :type: bloom
205
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  :code_systems:
206
127
  - http://terminology.hl7.org/CodeSystem/v3-NullFlavor
207
128
  - http://loinc.org
208
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-documentreference-category
209
- :file: hl7_org_fhir_us_core_ValueSet_us-core-documentreference-category.msgpack
210
- :count: 1
211
- :type: bloom
212
- :code_systems:
213
- - http://hl7.org/fhir/us/core/CodeSystem/us-core-documentreference-category
214
129
  - :url: http://hl7.org/fhir/ValueSet/document-relationship-type
215
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  :file: hl7_org_fhir_ValueSet_document-relationship-type.msgpack
216
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  :count: 4
217
132
  :type: bloom
218
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  :code_systems:
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  - http://hl7.org/fhir/document-relationship-type
220
- - :url: http://hl7.org/fhir/ValueSet/security-labels
221
- :file: hl7_org_fhir_ValueSet_security-labels.msgpack
222
- :count: 200
223
- :type: bloom
224
- :code_systems:
225
- - http://terminology.hl7.org/CodeSystem/v3-Confidentiality
226
- - http://terminology.hl7.org/CodeSystem/v3-ActCode
227
- - http://terminology.hl7.org/CodeSystem/v3-ObservationValue
228
- - http://terminology.hl7.org/CodeSystem/v3-ActReason
229
135
  - :url: http://hl7.org/fhir/ValueSet/mimetypes
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  :file: hl7_org_fhir_ValueSet_mimetypes.msgpack
231
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  :count: 2382
232
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  :type: bloom
233
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  :code_systems:
234
140
  - urn:ietf:bcp:13
235
- - :url: http://hl7.org/fhir/ValueSet/formatcodes
236
- :file: hl7_org_fhir_ValueSet_formatcodes.msgpack
237
- :count: 74
238
- :type: bloom
239
- :code_systems:
240
- - http://ihe.net/fhir/ValueSet/IHE.FormatCode.codesystem
241
141
  - :url: http://hl7.org/fhir/ValueSet/identifier-use
242
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  :file: hl7_org_fhir_ValueSet_identifier-use.msgpack
243
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  :count: 5
244
144
  :type: bloom
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  :code_systems:
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146
  - http://hl7.org/fhir/identifier-use
247
- - :url: http://hl7.org/fhir/ValueSet/identifier-type
248
- :file: hl7_org_fhir_ValueSet_identifier-type.msgpack
249
- :count: 18
250
- :type: bloom
251
- :code_systems:
252
- - http://terminology.hl7.org/CodeSystem/v2-0203
253
147
  - :url: http://hl7.org/fhir/ValueSet/encounter-status
254
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  :file: hl7_org_fhir_ValueSet_encounter-status.msgpack
255
149
  :count: 9
256
150
  :type: bloom
257
151
  :code_systems:
258
152
  - http://hl7.org/fhir/encounter-status
259
- - :url: http://terminology.hl7.org/ValueSet/v3-ActEncounterCode
260
- :file: terminology_hl7_org_ValueSet_v3-ActEncounterCode.msgpack
261
- :count: 11
262
- :type: bloom
263
- :code_systems:
264
- - http://terminology.hl7.org/CodeSystem/v3-ActCode
265
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-encounter-type
266
- :file: hl7_org_fhir_us_core_ValueSet_us-core-encounter-type.msgpack
267
- :count: 15951
268
- :type: bloom
269
- :code_systems:
270
- - http://snomed.info/sct
271
- - http://www.ama-assn.org/go/cpt
272
- - :url: http://hl7.org/fhir/ValueSet/encounter-participant-type
273
- :file: hl7_org_fhir_ValueSet_encounter-participant-type.msgpack
274
- :count: 12
275
- :type: bloom
276
- :code_systems:
277
- - http://terminology.hl7.org/CodeSystem/v3-ParticipationType
278
- - http://terminology.hl7.org/CodeSystem/participant-type
279
- - :url: http://hl7.org/fhir/ValueSet/encounter-reason
280
- :file: hl7_org_fhir_ValueSet_encounter-reason.msgpack
281
- :count: 4000
282
- :type: bloom
283
- :code_systems:
284
- - http://snomed.info/sct
285
- - :url: http://hl7.org/fhir/ValueSet/diagnosis-role
286
- :file: hl7_org_fhir_ValueSet_diagnosis-role.msgpack
287
- :count: 7
288
- :type: bloom
289
- :code_systems:
290
- - http://terminology.hl7.org/CodeSystem/diagnosis-role
291
- - :url: http://hl7.org/fhir/ValueSet/encounter-admit-source
292
- :file: hl7_org_fhir_ValueSet_encounter-admit-source.msgpack
293
- :count: 10
294
- :type: bloom
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- :code_systems:
296
- - http://terminology.hl7.org/CodeSystem/admit-source
297
- - :url: http://hl7.org/fhir/ValueSet/encounter-special-courtesy
298
- :file: hl7_org_fhir_ValueSet_encounter-special-courtesy.msgpack
299
- :count: 6
300
- :type: bloom
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- :code_systems:
302
- - http://terminology.hl7.org/CodeSystem/v3-EncounterSpecialCourtesy
303
- - http://terminology.hl7.org/CodeSystem/v3-NullFlavor
304
- - :url: http://hl7.org/fhir/ValueSet/encounter-special-arrangements
305
- :file: hl7_org_fhir_ValueSet_encounter-special-arrangements.msgpack
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- :count: 5
307
- :type: bloom
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- :code_systems:
309
- - http://terminology.hl7.org/CodeSystem/encounter-special-arrangements
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153
  - :url: http://hl7.org/fhir/ValueSet/encounter-location-status
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154
  :file: hl7_org_fhir_ValueSet_encounter-location-status.msgpack
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155
  :count: 4
@@ -319,60 +162,24 @@
319
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  :type: bloom
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  :code_systems:
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164
  - http://hl7.org/fhir/goal-status
322
- - :url: http://hl7.org/fhir/ValueSet/goal-achievement
323
- :file: hl7_org_fhir_ValueSet_goal-achievement.msgpack
324
- :count: 9
325
- :type: bloom
326
- :code_systems:
327
- - http://terminology.hl7.org/CodeSystem/goal-achievement
328
- - :url: http://hl7.org/fhir/ValueSet/goal-priority
329
- :file: hl7_org_fhir_ValueSet_goal-priority.msgpack
330
- :count: 3
331
- :type: bloom
332
- :code_systems:
333
- - http://terminology.hl7.org/CodeSystem/goal-priority
334
165
  - :url: http://hl7.org/fhir/ValueSet/immunization-status
335
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  :file: hl7_org_fhir_ValueSet_immunization-status.msgpack
336
167
  :count: 3
337
168
  :type: bloom
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169
  :code_systems:
339
170
  - http://hl7.org/fhir/event-status
340
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-vaccines-cvx
341
- :file: hl7_org_fhir_us_core_ValueSet_us-core-vaccines-cvx.msgpack
342
- :count: 172
343
- :type: bloom
344
- :code_systems:
345
- - http://hl7.org/fhir/sid/cvx
346
- - :url: http://hl7.org/fhir/ValueSet/immunization-function
347
- :file: hl7_org_fhir_ValueSet_immunization-function.msgpack
348
- :count: 2
349
- :type: bloom
350
- :code_systems:
351
- - http://terminology.hl7.org/CodeSystem/v2-0443
352
171
  - :url: http://hl7.org/fhir/ValueSet/location-status
353
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  :file: hl7_org_fhir_ValueSet_location-status.msgpack
354
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  :count: 3
355
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  :type: bloom
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  :code_systems:
357
176
  - http://hl7.org/fhir/location-status
358
- - :url: http://terminology.hl7.org/ValueSet/v2-0116
359
- :file: terminology_hl7_org_ValueSet_v2-0116.msgpack
360
- :count: 6
361
- :type: bloom
362
- :code_systems:
363
- - http://terminology.hl7.org/CodeSystem/v2-0116
364
177
  - :url: http://hl7.org/fhir/ValueSet/location-mode
365
178
  :file: hl7_org_fhir_ValueSet_location-mode.msgpack
366
179
  :count: 2
367
180
  :type: bloom
368
181
  :code_systems:
369
182
  - http://hl7.org/fhir/location-mode
370
- - :url: http://terminology.hl7.org/ValueSet/v3-ServiceDeliveryLocationRoleType
371
- :file: terminology_hl7_org_ValueSet_v3-ServiceDeliveryLocationRoleType.msgpack
372
- :count: 123
373
- :type: bloom
374
- :code_systems:
375
- - http://terminology.hl7.org/CodeSystem/v3-RoleCode
376
183
  - :url: http://hl7.org/fhir/ValueSet/address-use
377
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  :file: hl7_org_fhir_ValueSet_address-use.msgpack
378
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  :count: 5
@@ -385,24 +192,12 @@
385
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  :type: bloom
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  :code_systems:
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  - http://hl7.org/fhir/address-type
388
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-usps-state
389
- :file: hl7_org_fhir_us_core_ValueSet_us-core-usps-state.msgpack
390
- :count: 62
391
- :type: bloom
392
- :code_systems:
393
- - https://www.usps.com/
394
195
  - :url: http://hl7.org/fhir/ValueSet/days-of-week
395
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  :file: hl7_org_fhir_ValueSet_days-of-week.msgpack
396
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  :count: 7
397
198
  :type: bloom
398
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  :code_systems:
399
200
  - http://hl7.org/fhir/days-of-week
400
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-medication-codes
401
- :file: hl7_org_fhir_us_core_ValueSet_us-core-medication-codes.msgpack
402
- :count: 130098
403
- :type: bloom
404
- :code_systems:
405
- - http://www.nlm.nih.gov/research/umls/rxnorm
406
201
  - :url: http://hl7.org/fhir/ValueSet/medication-status
407
202
  :file: hl7_org_fhir_ValueSet_medication-status.msgpack
408
203
  :count: 3
@@ -433,54 +228,12 @@
433
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  :type: bloom
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  :code_systems:
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  - http://hl7.org/fhir/observation-status
436
- - :url: http://hl7.org/fhir/ValueSet/observation-category
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- :file: hl7_org_fhir_ValueSet_observation-category.msgpack
438
- :count: 9
439
- :type: bloom
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- :code_systems:
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- - http://terminology.hl7.org/CodeSystem/observation-category
442
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-smoking-status-observation-codes
443
- :file: hl7_org_fhir_us_core_ValueSet_us-core-smoking-status-observation-codes.msgpack
444
- :count: 1
445
- :type: bloom
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- :code_systems:
447
- - http://loinc.org
448
- - :url: http://hl7.org/fhir/us/core/ValueSet/us-core-observation-smokingstatus
449
- :file: hl7_org_fhir_us_core_ValueSet_us-core-observation-smokingstatus.msgpack
450
- :count: 8
451
- :type: bloom
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- :code_systems:
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- - http://snomed.info/sct
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330
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339
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351
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471
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532
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  :file: hl7_org_fhir_address-use.msgpack
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567
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600
  - :url: http://unitsofmeasure.org
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