onc_certification_g10_test_kit 3.0.1 → 3.2.0

data/lib/onc_certification_g10_test_kit/profile_selector.rb

@@ -1,5 +1,9 @@
+require_relative 'g10_options'
+
 module ONCCertificationG10TestKit
   module ProfileSelector
+    include G10Options
+
     def extract_profile(profile)
       case profile
       when 'Medication'
@@ -28,8 +32,8 @@ module ONCCertificationG10TestKit
     def select_profile(resource) # rubocop:disable Metrics/CyclomaticComplexity
       case resource.resourceType
       when 'Condition'
-        case suite_options[:us_core_version]
-        when 'us_core_5'
+        case us_core_version
+        when US_CORE_5
           if resource_contains_category(resource, 'encounter-diagnosis', 'http://terminology.hl7.org/CodeSystem/condition-category')
             extract_profile('ConditionEncounterDiagnosis')
           elsif resource_contains_category(resource, 'problem-list-item',
@@ -56,28 +60,28 @@ module ONCCertificationG10TestKit
         return extract_profile('PulseOximetry') if observation_contains_code(resource, '59408-5')
 
         if observation_contains_code(resource, '8289-1')
-          case suite_options[:us_core_version]
-          when 'us_core_3'
+          case us_core_version
+          when US_CORE_3
             return extract_profile('HeadCircumference')
           else
             return extract_profile('HeadCircumferencePercentile')
           end
         end
 
-        return extract_profile('HeadCircumference') if observation_contains_code(resource, '9843-4')
+        if observation_contains_code(resource, '9843-4') && !using_us_core_3?
+          return extract_profile('HeadCircumference')
+        end
 
         # FHIR Vital Signs profiles: https://www.hl7.org/fhir/observation-vitalsigns.html
         # Vital Signs Panel, Oxygen Saturation are not required by USCDI
         # Body Mass Index is replaced by :pediatric_bmi_age Profile
         # Systolic Blood Pressure, Diastolic Blood Pressure are covered by :blood_pressure Profile
         # Head Circumference is replaced by US Core Head Occipital-frontal Circumference Percentile Profile
-        if observation_contains_code(resource, '39156-5') && suite_options[:us_core_version] != 'us_core_3'
-          return extract_profile('Bmi')
-        end
+        return extract_profile('Bmi') if observation_contains_code(resource, '39156-5') && !using_us_core_3?
 
         if observation_contains_code(resource, '85354-9')
-          case suite_options[:us_core_version]
-          when 'us_core_3'
+          case us_core_version
+          when US_CORE_3
             return extract_profile('Bp')
           else
             return extract_profile('BloodPressure')
@@ -85,8 +89,8 @@ module ONCCertificationG10TestKit
         end
 
         if observation_contains_code(resource, '8302-2')
-          case suite_options[:us_core_version]
-          when 'us_core_3'
+          case us_core_version
+          when US_CORE_3
             return extract_profile('Bodyheight')
           else
             return extract_profile('BodyHeight')
@@ -94,8 +98,8 @@ module ONCCertificationG10TestKit
         end
 
         if observation_contains_code(resource, '8310-5')
-          case suite_options[:us_core_version]
-          when 'us_core_3'
+          case us_core_version
+          when US_CORE_3
             return extract_profile('Bodytemp')
           else
             return extract_profile('BodyTemperature')
@@ -103,8 +107,8 @@ module ONCCertificationG10TestKit
         end
 
         if observation_contains_code(resource, '29463-7')
-          case suite_options[:us_core_version]
-          when 'us_core_3'
+          case us_core_version
+          when US_CORE_3
             return extract_profile('Bodyweight')
           else
             return extract_profile('BodyWeight')
@@ -112,8 +116,8 @@ module ONCCertificationG10TestKit
         end
 
         if observation_contains_code(resource, '8867-4')
-          case suite_options[:us_core_version]
-          when 'us_core_3'
+          case us_core_version
+          when US_CORE_3
             return extract_profile('Heartrate')
           else
             return extract_profile('HeartRate')
@@ -121,31 +125,37 @@ module ONCCertificationG10TestKit
         end
 
         if observation_contains_code(resource, '9279-1')
-          case suite_options[:us_core_version]
-          when 'us_core_3'
+          case us_core_version
+          when US_CORE_3
             return extract_profile('Resprate')
           else
             return extract_profile('RespiratoryRate')
           end
         end
 
-        if suite_options[:us_core_version] == 'us_core_5' &&
+        if using_us_core_5? &&
            resource_contains_category(
              resource, 'clinical-test', 'http://terminology.hl7.org/CodeSystem/observation-category'
            )
           return extract_profile('ObservationClinicalTest')
         end
 
-        if suite_options[:us_core_version] == 'us_core_5' && observation_contains_code(resource, '76690-7')
+        if using_us_core_5? && observation_contains_code(resource, '76690-7')
           return extract_profile('ObservationSexualOrientation')
         end
 
-        if suite_options[:us_core_version] == 'us_core_5' &&
+        if using_us_core_5? &&
            resource_contains_category(resource, 'social-history',
                                       'http://terminology.hl7.org/CodeSystem/observation-category')
           return extract_profile('ObservationSocialHistory')
         end
 
+        if using_us_core_5? &&
+           resource_contains_category(resource, 'imaging',
+                                      'http://terminology.hl7.org/CodeSystem/observation-category')
+          return extract_profile('ObservationImaging')
+        end
+
         # We will simply match all Observations of category "survey" to SDOH,
         # and do not look at the category "sdoh".  US Core spec team says that
         # support for the "sdoh" category is limited, and the validation rules
@@ -157,7 +167,7 @@ module ONCCertificationG10TestKit
         # `resource_contains_category(resource, 'sdoh',
         #                                       'http://terminology.hl7.org/CodeSystem/observation-category') &&`
         # along with a specific extract_profile('ObservationSurvey') to catch non-sdoh.
-        if suite_options[:us_core_version] == 'us_core_5' &&
+        if using_us_core_5? &&
            resource_contains_category(resource, 'survey',
                                       'http://terminology.hl7.org/CodeSystem/observation-category')
 

data/lib/onc_certification_g10_test_kit/resource_access_test.rb

@@ -74,10 +74,9 @@ module ONCCertificationG10TestKit
             body of the response.
           )
           begin
+            assert_valid_json(response[:body])
             parsed_body = JSON.parse(response[:body])
             assert parsed_body['resourceType'] == 'OperationOutcome', error_message
-          rescue JSON::ParserError
-            assert false, error_message
           end
           fhir_search(
             resource_type,

data/lib/onc_certification_g10_test_kit/restricted_resource_type_access_group.rb

@@ -323,7 +323,7 @@ module ONCCertificationG10TestKit
       )
       id :g10_encounter_restricted_access
 
-      required_suite_options us_core_version: 'us_core_5'
+      required_suite_options G10Options::US_CORE_5_REQUIREMENT
 
       def resource_group
         USCoreTestKit::USCoreV501::EncounterGroup
@@ -343,7 +343,7 @@ module ONCCertificationG10TestKit
       )
       id :g10_service_request_restricted_access
 
-      required_suite_options us_core_version: 'us_core_5'
+      required_suite_options G10Options::US_CORE_5_REQUIREMENT
 
       def resource_group
         USCoreTestKit::USCoreV501::ServiceRequestGroup

data/lib/onc_certification_g10_test_kit/short_id_manager.rb

@@ -0,0 +1,46 @@
+module ONCCertificationG10TestKit
+  # @private
+  # This module ensures that short test ids don't change
+  module ShortIDManager
+    class << self
+      def all_children(runnable)
+        runnable
+          .children
+          .flat_map { |child| [child] + all_children(child) }
+      end
+
+      def short_id_file_path
+        File.join(__dir__, 'short_id_map.yml')
+      end
+
+      def short_id_map
+        @short_id_map ||= YAML.load_file(short_id_file_path)
+      end
+
+      def assign_short_ids
+        all_children(G10CertificationSuite).each do |runnable|
+          short_id = short_id_map.fetch(runnable.id)
+          runnable.define_singleton_method(:short_id) do
+            short_id
+          end
+        rescue KeyError
+          Inferno::Application['logger'].warn("No short id defined for #{runnable.id}")
+        end
+      end
+
+      ### The methods below are only for creating an initial list of short ids
+
+      # Run this in an inferno console to save the current short ids
+      def save_current_short_id_map
+        File.write(short_id_file_path, current_short_id_map.to_yaml)
+      end
+
+      def current_short_id_map
+        @current_short_id_map ||=
+          all_children(G10CertificationSuite).each_with_object({}) do |runnable, mapping|
+            mapping[runnable.id] = runnable.short_id
+          end
+      end
+    end
+  end
+end