omf_web 0.9.7 → 0.9.8

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Files changed (62) hide show
  1. data/.gitignore +1 -0
  2. data/README.md +1 -1
  3. data/bin/omf_web_demo +3 -0
  4. data/bin/omf_web_demo.sh +0 -0
  5. data/doc/tutorial/tut01/hello_world.rb +27 -0
  6. data/doc/tutorial/tut02/hello_graph.rb +85 -0
  7. data/doc/tutorial/tut03/hello_database.rb +69 -0
  8. data/doc/tutorial/tut03/nmetric.sq3 +0 -0
  9. data/example/bridge/config.ru +2 -1
  10. data/example/demo/data_sources/downloads.csv +96 -1
  11. data/example/demo/demo_viz_server.rb +46 -28
  12. data/example/openflow-gec15/README.md +2 -0
  13. data/example/openflow-gec15/doc/gec15_topo.png +0 -0
  14. data/example/openflow-gec15/exp_source.rb +48 -9
  15. data/example/openflow-gec15/of_viz_server.rb +1 -1
  16. data/example/openflow-gec15/repository/of-exp.rb +117 -12
  17. data/example/openflow-gec15/repository/trema-ctl6.rb +2 -2
  18. data/example/simple/README.md +29 -1
  19. data/example/simple/data_sources/ping_source.rb +2 -2
  20. data/lib/irods4r/directory.rb +49 -0
  21. data/lib/irods4r/file.rb +53 -0
  22. data/lib/irods4r/icommands.rb +63 -0
  23. data/lib/irods4r.rb +34 -0
  24. data/lib/omf-web/content/content_proxy.rb +14 -5
  25. data/lib/omf-web/content/file_repository.rb +36 -75
  26. data/lib/omf-web/content/git_repository.rb +39 -35
  27. data/lib/omf-web/content/irods_repository.rb +191 -0
  28. data/lib/omf-web/content/repository.rb +84 -21
  29. data/lib/omf-web/content/static_repository.rb +61 -0
  30. data/lib/omf-web/data_source_proxy.rb +3 -3
  31. data/lib/omf-web/rack/session_authenticator.rb +67 -35
  32. data/lib/omf-web/rack/tab_mapper.rb +2 -1
  33. data/lib/omf-web/rack/websocket_handler.rb +49 -10
  34. data/lib/omf-web/session_store.rb +9 -8
  35. data/lib/omf-web/theme/bright/page.rb +1 -1
  36. data/lib/omf-web/thin/runner.rb +18 -5
  37. data/lib/omf-web/version.rb +1 -1
  38. data/lib/omf-web/widget/text/maruku/output/to_html.rb +8 -2
  39. data/lib/omf_web.rb +17 -2
  40. data/omf_web.gemspec +0 -1
  41. data/share/htdocs/graph/js/abstract_widget.js +3 -1
  42. data/share/htdocs/graph/js/barchart_brush.js +240 -0
  43. data/share/htdocs/js/data_source2.js +4 -1
  44. data/share/htdocs/js/mustache.js +17 -11
  45. data/share/htdocs/theme/bright/css/bright.css +1 -1
  46. data/share/htdocs/vendor/{bootstrap-2.1.1 → bootstrap-2.3.1}/css/bootstrap-responsive.css +56 -5
  47. data/share/htdocs/vendor/bootstrap-2.3.1/css/bootstrap-responsive.min.css +9 -0
  48. data/share/htdocs/vendor/{bootstrap-2.1.1 → bootstrap-2.3.1}/css/bootstrap.css +856 -472
  49. data/share/htdocs/vendor/bootstrap-2.3.1/css/bootstrap.min.css +9 -0
  50. data/share/htdocs/vendor/{bootstrap-2.1.1 → bootstrap-2.3.1}/img/glyphicons-halflings-white.png +0 -0
  51. data/share/htdocs/vendor/{bootstrap-2.1.1 → bootstrap-2.3.1}/img/glyphicons-halflings.png +0 -0
  52. data/share/htdocs/vendor/{bootstrap-2.1.1 → bootstrap-2.3.1}/js/bootstrap.js +427 -178
  53. data/share/htdocs/vendor/bootstrap-2.3.1/js/bootstrap.min.js +6 -0
  54. data/share/htdocs/vendor/jquery-tipsy/css/tipsy.css +25 -0
  55. data/share/htdocs/vendor/jquery-tipsy/js/jquery.tipsy.js +258 -0
  56. metadata +27 -14
  57. data/bin/omf-web-basic +0 -235
  58. data/share/htdocs/vendor/.DS_Store +0 -0
  59. data/share/htdocs/vendor/bootstrap-2.1.1/css/bootstrap-responsive.min.css +0 -9
  60. data/share/htdocs/vendor/bootstrap-2.1.1/css/bootstrap.min.css +0 -9
  61. data/share/htdocs/vendor/bootstrap-2.1.1/js/bootstrap.min.js +0 -6
  62. data/share/htdocs/vendor/jquery-ui-1.8.23/index.html +0 -383
data/share/htdocs/js/data_source2.js CHANGED
@@ -6,7 +6,10 @@ OML.data_sources = function() {
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  function context() {};
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  context.register = function(opts) {
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- sources[opts.id || opts.name] = new OML.data_source(opts);
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+ var id = opts.id || opts.name;
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+ if (sources[id] == null) {
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+ sources[id] = new OML.data_source(opts);
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+ }
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  return context;
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  };
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data/share/htdocs/js/mustache.js CHANGED
@@ -8,21 +8,27 @@ L.provide('OML.mustache', ["vendor/mustache/mustache.js", 'vendor/bootstrap/css/
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  version: "0.1",
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  }
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- var template_url = opts.template;
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- if (! template_url) {
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- throw "Missing template declaration in mustache widget";
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- }
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- var context = {};
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+ var context = opts.context || {};
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  var el = $('#' + opts.base_id);
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-
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- $.ajax({
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- url: '/resource/' + template_url,
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- type: 'get'
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- }).done(function(template) {
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+ var render_f = function(template) {
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  var html = Mustache.to_html(template, context);
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  el.html(html);
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  var i = 0;
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- })
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+ };
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+
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+ var text = opts.text;
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+ if (text) { //} != undefined) {
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+ render_f(text);
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+ } else {
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+ var template_url = opts.template;
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+ if (! template_url) {
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+ throw "Missing template declaration in mustache widget";
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+ }
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+ $.ajax({
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+ url: '/resource/' + template_url,
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+ type: 'get'
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+ }).done(render_f);
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+ }
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  return moustache;
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  }
data/share/htdocs/theme/bright/css/bright.css CHANGED
@@ -232,7 +232,7 @@ ol.widget_tools_menu li.current a {
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  border: 1px solid #F47030;
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  }
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- ol.widget_tools_menu li.data_line_chart2 a {
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+ ol.widget_tools_menu li.data_line_chart3 a {
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  background: url(/resource/graph/img/line_chart.png) 0px -50px no-repeat;
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  }
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data/share/htdocs/vendor/{bootstrap-2.1.1 → bootstrap-2.3.1}/css/bootstrap-responsive.css RENAMED
@@ -1,5 +1,5 @@
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  /*!
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- * Bootstrap Responsive v2.1.1
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+ * Bootstrap Responsive v2.3.1
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  *
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  * Copyright 2012 Twitter, Inc
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  * Licensed under the Apache License v2.0
@@ -40,6 +40,10 @@
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  box-sizing: border-box;
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  }
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+ @-ms-viewport {
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+ width: device-width;
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+ }
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+
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  .hidden {
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  display: none;
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  visibility: hidden;
@@ -91,6 +95,19 @@
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  }
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  }
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+ .visible-print {
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+ display: none !important;
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+ }
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+
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+ @media print {
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+ .visible-print {
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+ display: inherit !important;
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+ }
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+ .hidden-print {
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+ display: none !important;
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+ }
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+ }
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+
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  @media (min-width: 1200px) {
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  .row {
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  margin-left: -30px;
@@ -215,6 +232,9 @@
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  .row-fluid [class*="span"]:first-child {
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  margin-left: 0;
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  }
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+ .row-fluid .controls-row [class*="span"] + [class*="span"] {
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+ margin-left: 2.564102564102564%;
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+ }
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  .row-fluid .span12 {
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  width: 100%;
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  *width: 99.94680851063829%;
@@ -562,6 +582,9 @@
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  .row-fluid [class*="span"]:first-child {
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  margin-left: 0;
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  }
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+ .row-fluid .controls-row [class*="span"] + [class*="span"] {
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+ margin-left: 2.7624309392265194%;
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+ }
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  .row-fluid .span12 {
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  width: 100%;
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  *width: 99.94680851063829%;
@@ -814,6 +837,7 @@
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  margin-left: 0;
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  }
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  [class*="span"],
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+ .uneditable-input[class*="span"],
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  .row-fluid [class*="span"] {
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  display: block;
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  float: none;
@@ -830,6 +854,9 @@
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  -moz-box-sizing: border-box;
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  box-sizing: border-box;
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  }
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+ .row-fluid [class*="offset"]:first-child {
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+ margin-left: 0;
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+ }
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  .input-large,
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  .input-xlarge,
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  .input-xxlarge,
@@ -862,8 +889,11 @@
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  width: auto;
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  margin: 0;
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  }
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+ .modal.fade {
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+ top: -100px;
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+ }
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  .modal.fade.in {
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- top: auto;
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+ top: 20px;
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  }
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  }
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@@ -895,6 +925,16 @@
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  padding-right: 10px;
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  padding-left: 10px;
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  }
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+ .media .pull-left,
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+ .media .pull-right {
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+ display: block;
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+ float: none;
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+ margin-bottom: 10px;
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+ }
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+ .media-object {
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+ margin-right: 0;
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+ margin-left: 0;
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+ }
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  .modal {
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  top: 10px;
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  right: 10px;
@@ -976,11 +1016,19 @@
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  margin-bottom: 2px;
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  }
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  .nav-collapse .nav > li > a:hover,
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- .nav-collapse .dropdown-menu a:hover {
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+ .nav-collapse .nav > li > a:focus,
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+ .nav-collapse .dropdown-menu a:hover,
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+ .nav-collapse .dropdown-menu a:focus {
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  background-color: #f2f2f2;
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  }
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+ .navbar-inverse .nav-collapse .nav > li > a,
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+ .navbar-inverse .nav-collapse .dropdown-menu a {
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+ color: #999999;
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+ }
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  .navbar-inverse .nav-collapse .nav > li > a:hover,
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- .navbar-inverse .nav-collapse .dropdown-menu a:hover {
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+ .navbar-inverse .nav-collapse .nav > li > a:focus,
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+ .navbar-inverse .nav-collapse .dropdown-menu a:hover,
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+ .navbar-inverse .nav-collapse .dropdown-menu a:focus {
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  background-color: #111111;
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  }
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  .nav-collapse.in .btn-group {
@@ -991,7 +1039,7 @@
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  position: static;
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  top: auto;
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  left: auto;
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- display: block;
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+ display: none;
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  float: none;
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  max-width: none;
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  padding: 0;
@@ -1005,6 +1053,9 @@
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  -moz-box-shadow: none;
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  box-shadow: none;
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  }
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+ .nav-collapse .open > .dropdown-menu {
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+ display: block;
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+ }
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  .nav-collapse .dropdown-menu:before,
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  .nav-collapse .dropdown-menu:after {
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  display: none;
data/share/htdocs/vendor/bootstrap-2.3.1/css/bootstrap-responsive.min.css ADDED
@@ -0,0 +1,9 @@
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+ /*!
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+ * Bootstrap Responsive v2.3.1
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+ *
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+ * Copyright 2012 Twitter, Inc
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+ * Licensed under the Apache License v2.0
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+ * http://www.apache.org/licenses/LICENSE-2.0
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+ *
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+ * Designed and built with all the love in the world @twitter by @mdo and @fat.
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+ */.clearfix{*zoom:1}.clearfix:before,.clearfix:after{display:table;line-height:0;content:""}.clearfix:after{clear:both}.hide-text{font:0/0 a;color:transparent;text-shadow:none;background-color:transparent;border:0}.input-block-level{display:block;width:100%;min-height:30px;-webkit-box-sizing:border-box;-moz-box-sizing:border-box;box-sizing:border-box}@-ms-viewport{width:device-width}.hidden{display:none;visibility:hidden}.visible-phone{display:none!important}.visible-tablet{display:none!important}.hidden-desktop{display:none!important}.visible-desktop{display:inherit!important}@media(min-width:768px) and (max-width:979px){.hidden-desktop{display:inherit!important}.visible-desktop{display:none!important}.visible-tablet{display:inherit!important}.hidden-tablet{display:none!important}}@media(max-width:767px){.hidden-desktop{display:inherit!important}.visible-desktop{display:none!important}.visible-phone{display:inherit!important}.hidden-phone{display:none!important}}.visible-print{display:none!important}@media print{.visible-print{display:inherit!important}.hidden-print{display:none!important}}@media(min-width:1200px){.row{margin-left:-30px;*zoom:1}.row:before,.row:after{display:table;line-height:0;content:""}.row:after{clear:both}[class*="span"]{float:left;min-height:1px;margin-left:30px}.container,.navbar-static-top .container,.navbar-fixed-top .container,.navbar-fixed-bottom .container{width:1170px}.span12{width:1170px}.span11{width:1070px}.span10{width:970px}.span9{width:870px}.span8{width:770px}.span7{width:670px}.span6{width:570px}.span5{width:470px}.span4{width:370px}.span3{width:270px}.span2{width:170px}.span1{width:70px}.offset12{margin-left:1230px}.offset11{margin-left:1130px}.offset10{margin-left:1030px}.offset9{margin-left:930px}.offset8{margin-left:830px}.offset7{margin-left:730px}.offset6{margin-left:630px}.offset5{margin-left:530px}.offset4{margin-left:430px}.offset3{margin-left:330px}.offset2{margin-left:230px}.offset1{margin-left:130px}.row-fluid{width:100%;*zoom:1}.row-fluid:before,.row-fluid:after{display:table;line-height:0;content:""}.row-fluid:after{clear:both}.row-fluid [class*="span"]{display:block;float:left;width:100%;min-height:30px;margin-left:2.564102564102564%;*margin-left:2.5109110747408616%;-webkit-box-sizing:border-box;-moz-box-sizing:border-box;box-sizing:border-box}.row-fluid [class*="span"]:first-child{margin-left:0}.row-fluid .controls-row [class*="span"]+[class*="span"]{margin-left:2.564102564102564%}.row-fluid .span12{width:100%;*width:99.94680851063829%}.row-fluid .span11{width:91.45299145299145%;*width:91.39979996362975%}.row-fluid .span10{width:82.90598290598291%;*width:82.8527914166212%}.row-fluid .span9{width:74.35897435897436%;*width:74.30578286961266%}.row-fluid .span8{width:65.81196581196582%;*width:65.75877432260411%}.row-fluid .span7{width:57.26495726495726%;*width:57.21176577559556%}.row-fluid .span6{width:48.717948717948715%;*width:48.664757228587014%}.row-fluid .span5{width:40.17094017094017%;*width:40.11774868157847%}.row-fluid .span4{width:31.623931623931625%;*width:31.570740134569924%}.row-fluid .span3{width:23.076923076923077%;*width:23.023731587561375%}.row-fluid .span2{width:14.52991452991453%;*width:14.476723040552828%}.row-fluid .span1{width:5.982905982905983%;*width:5.929714493544281%}.row-fluid .offset12{margin-left:105.12820512820512%;*margin-left:105.02182214948171%}.row-fluid .offset12:first-child{margin-left:102.56410256410257%;*margin-left:102.45771958537915%}.row-fluid .offset11{margin-left:96.58119658119658%;*margin-left:96.47481360247316%}.row-fluid .offset11:first-child{margin-left:94.01709401709402%;*margin-left:93.91071103837061%}.row-fluid .offset10{margin-left:88.03418803418803%;*margin-left:87.92780505546462%}.row-fluid .offset10:first-child{margin-left:85.47008547008548%;*margin-left:85.36370249136206%}.row-fluid .offset9{margin-left:79.48717948717949%;*margin-left:79.38079650845607%}.row-fluid .offset9:first-child{margin-left:76.92307692307693%;*margin-left:76.81669394435352%}.row-fluid .offset8{margin-left:70.94017094017094%;*margin-left:70.83378796144753%}.row-fluid .offset8:first-child{margin-left:68.37606837606839%;*margin-left:68.26968539734497%}.row-fluid .offset7{margin-left:62.393162393162385%;*margin-left:62.28677941443899%}.row-fluid .offset7:first-child{margin-left:59.82905982905982%;*margin-left:59.72267685033642%}.row-fluid .offset6{margin-left:53.84615384615384%;*margin-left:53.739770867430444%}.row-fluid .offset6:first-child{margin-left:51.28205128205128%;*margin-left:51.175668303327875%}.row-fluid .offset5{margin-left:45.299145299145295%;*margin-left:45.1927623204219%}.row-fluid .offset5:first-child{margin-left:42.73504273504273%;*margin-left:42.62865975631933%}.row-fluid .offset4{margin-left:36.75213675213675%;*margin-left:36.645753773413354%}.row-fluid .offset4:first-child{margin-left:34.18803418803419%;*margin-left:34.081651209310785%}.row-fluid .offset3{margin-left:28.205128205128204%;*margin-left:28.0987452264048%}.row-fluid .offset3:first-child{margin-left:25.641025641025642%;*margin-left:25.53464266230224%}.row-fluid .offset2{margin-left:19.65811965811966%;*margin-left:19.551736679396257%}.row-fluid .offset2:first-child{margin-left:17.094017094017094%;*margin-left:16.98763411529369%}.row-fluid .offset1{margin-left:11.11111111111111%;*margin-left:11.004728132387708%}.row-fluid .offset1:first-child{margin-left:8.547008547008547%;*margin-left:8.440625568285142%}input,textarea,.uneditable-input{margin-left:0}.controls-row [class*="span"]+[class*="span"]{margin-left:30px}input.span12,textarea.span12,.uneditable-input.span12{width:1156px}input.span11,textarea.span11,.uneditable-input.span11{width:1056px}input.span10,textarea.span10,.uneditable-input.span10{width:956px}input.span9,textarea.span9,.uneditable-input.span9{width:856px}input.span8,textarea.span8,.uneditable-input.span8{width:756px}input.span7,textarea.span7,.uneditable-input.span7{width:656px}input.span6,textarea.span6,.uneditable-input.span6{width:556px}input.span5,textarea.span5,.uneditable-input.span5{width:456px}input.span4,textarea.span4,.uneditable-input.span4{width:356px}input.span3,textarea.span3,.uneditable-input.span3{width:256px}input.span2,textarea.span2,.uneditable-input.span2{width:156px}input.span1,textarea.span1,.uneditable-input.span1{width:56px}.thumbnails{margin-left:-30px}.thumbnails>li{margin-left:30px}.row-fluid .thumbnails{margin-left:0}}@media(min-width:768px) and 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