ols 0.0.1 → 0.1.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (15) hide show
  1. data/.gitignore +8 -1
  2. data/Gemfile +4 -0
  3. data/History.txt +6 -0
  4. data/README.rdoc +48 -57
  5. data/lib/ols.rb +115 -387
  6. data/lib/ols/graph.rb +91 -0
  7. data/lib/ols/term.rb +647 -0
  8. data/lib/ols/version.rb +4 -1
  9. data/ols.gemspec +7 -12
  10. data/script/console +9 -0
  11. data/test/test_helper.rb +24 -9
  12. data/test/test_ols.rb +44 -112
  13. data/test/test_ols_graph.rb +36 -0
  14. data/test/test_ols_term.rb +484 -0
  15. metadata +100 -105
metadata CHANGED
@@ -1,160 +1,155 @@
1
- --- !ruby/object:Gem::Specification
1
+ --- !ruby/object:Gem::Specification
2
2
  name: ols
3
- version: !ruby/object:Gem::Version
3
+ version: !ruby/object:Gem::Version
4
+ version: 0.1.0
4
5
  prerelease:
5
- version: 0.0.1
6
6
  platform: ruby
7
- authors:
7
+ authors:
8
8
  - Darren Oakley
9
9
  autorequire:
10
10
  bindir: bin
11
11
  cert_chain: []
12
-
13
- date: 2011-04-15 00:00:00 +01:00
14
- default_executable:
15
- dependencies:
16
- - !ruby/object:Gem::Dependency
17
- name: rubytree
18
- requirement: &id001 !ruby/object:Gem::Requirement
12
+ date: 2011-11-04 00:00:00.000000000 Z
13
+ dependencies:
14
+ - !ruby/object:Gem::Dependency
15
+ name: savon
16
+ requirement: &2152733760 !ruby/object:Gem::Requirement
19
17
  none: false
20
- requirements:
21
- - - ">="
22
- - !ruby/object:Gem::Version
23
- version: "0"
18
+ requirements:
19
+ - - ! '>='
20
+ - !ruby/object:Gem::Version
21
+ version: '0'
24
22
  type: :runtime
25
23
  prerelease: false
26
- version_requirements: *id001
27
- - !ruby/object:Gem::Dependency
28
- name: sequel
29
- requirement: &id002 !ruby/object:Gem::Requirement
30
- none: false
31
- requirements:
32
- - - ">="
33
- - !ruby/object:Gem::Version
34
- version: "0"
35
- type: :runtime
36
- prerelease: false
37
- version_requirements: *id002
38
- - !ruby/object:Gem::Dependency
39
- name: mysql2
40
- requirement: &id003 !ruby/object:Gem::Requirement
24
+ version_requirements: *2152733760
25
+ - !ruby/object:Gem::Dependency
26
+ name: rake
27
+ requirement: &2152733260 !ruby/object:Gem::Requirement
41
28
  none: false
42
- requirements:
43
- - - ">="
44
- - !ruby/object:Gem::Version
45
- version: "0"
46
- type: :runtime
29
+ requirements:
30
+ - - ! '>='
31
+ - !ruby/object:Gem::Version
32
+ version: '0'
33
+ type: :development
47
34
  prerelease: false
48
- version_requirements: *id003
49
- - !ruby/object:Gem::Dependency
50
- name: json
51
- requirement: &id004 !ruby/object:Gem::Requirement
35
+ version_requirements: *2152733260
36
+ - !ruby/object:Gem::Dependency
37
+ name: shoulda
38
+ requirement: &2152732720 !ruby/object:Gem::Requirement
52
39
  none: false
53
- requirements:
54
- - - ">="
55
- - !ruby/object:Gem::Version
56
- version: "0"
57
- type: :runtime
40
+ requirements:
41
+ - - ! '>='
42
+ - !ruby/object:Gem::Version
43
+ version: '0'
44
+ type: :development
58
45
  prerelease: false
59
- version_requirements: *id004
60
- - !ruby/object:Gem::Dependency
61
- name: rake
62
- requirement: &id005 !ruby/object:Gem::Requirement
46
+ version_requirements: *2152732720
47
+ - !ruby/object:Gem::Dependency
48
+ name: vcr
49
+ requirement: &2152731500 !ruby/object:Gem::Requirement
63
50
  none: false
64
- requirements:
65
- - - ">="
66
- - !ruby/object:Gem::Version
67
- version: "0"
51
+ requirements:
52
+ - - ! '>='
53
+ - !ruby/object:Gem::Version
54
+ version: '0'
68
55
  type: :development
69
56
  prerelease: false
70
- version_requirements: *id005
71
- - !ruby/object:Gem::Dependency
72
- name: shoulda
73
- requirement: &id006 !ruby/object:Gem::Requirement
57
+ version_requirements: *2152731500
58
+ - !ruby/object:Gem::Dependency
59
+ name: webmock
60
+ requirement: &2152730520 !ruby/object:Gem::Requirement
74
61
  none: false
75
- requirements:
76
- - - ">="
77
- - !ruby/object:Gem::Version
78
- version: "0"
62
+ requirements:
63
+ - - ! '>='
64
+ - !ruby/object:Gem::Version
65
+ version: '0'
79
66
  type: :development
80
67
  prerelease: false
81
- version_requirements: *id006
82
- - !ruby/object:Gem::Dependency
68
+ version_requirements: *2152730520
69
+ - !ruby/object:Gem::Dependency
83
70
  name: simplecov
84
- requirement: &id007 !ruby/object:Gem::Requirement
71
+ requirement: &2152728460 !ruby/object:Gem::Requirement
85
72
  none: false
86
- requirements:
87
- - - ">="
88
- - !ruby/object:Gem::Version
89
- version: "0"
73
+ requirements:
74
+ - - ! '>='
75
+ - !ruby/object:Gem::Version
76
+ version: '0'
90
77
  type: :development
91
78
  prerelease: false
92
- version_requirements: *id007
93
- - !ruby/object:Gem::Dependency
79
+ version_requirements: *2152728460
80
+ - !ruby/object:Gem::Dependency
94
81
  name: simplecov-rcov
95
- requirement: &id008 !ruby/object:Gem::Requirement
82
+ requirement: &2152727120 !ruby/object:Gem::Requirement
83
+ none: false
84
+ requirements:
85
+ - - ! '>='
86
+ - !ruby/object:Gem::Version
87
+ version: '0'
88
+ type: :development
89
+ prerelease: false
90
+ version_requirements: *2152727120
91
+ - !ruby/object:Gem::Dependency
92
+ name: mocha
93
+ requirement: &2152725360 !ruby/object:Gem::Requirement
96
94
  none: false
97
- requirements:
98
- - - ">="
99
- - !ruby/object:Gem::Version
100
- version: "0"
95
+ requirements:
96
+ - - ! '>='
97
+ - !ruby/object:Gem::Version
98
+ version: '0'
101
99
  type: :development
102
100
  prerelease: false
103
- version_requirements: *id008
104
- description: "\n OLS provides a simple interface to the EBI's Ontology Lookup Service (http://www.ebi.ac.uk/ontology-lookup/). \n It provides an easy lookup of ontology terms and automagically builds up ontology trees using RubyTree \n (http://rubytree.rubyforge.org/) as a base library.\n\n PLEASE NOTE: The current version of this gem requires a local install of the OLS database running on MySQL. \n Please see http://www.ebi.ac.uk/ontology-lookup/databaseExport.do I will update the code in the future \n to run off the soap service.\n "
105
- email:
101
+ version_requirements: *2152725360
102
+ description: ! "\n OLS provides a simple interface to the EBI's Ontology Lookup
103
+ Service (http://www.ebi.ac.uk/ontology-lookup/).\n It provides an easy lookup
104
+ of ontology terms and automagically builds up ontology trees for you.\n "
105
+ email:
106
106
  - daz.oakley@gmail.com
107
107
  executables: []
108
-
109
108
  extensions: []
110
-
111
109
  extra_rdoc_files: []
112
-
113
- files:
110
+ files:
114
111
  - .gitignore
115
112
  - Gemfile
116
113
  - History.txt
117
114
  - README.rdoc
118
115
  - Rakefile
119
116
  - lib/ols.rb
117
+ - lib/ols/graph.rb
118
+ - lib/ols/term.rb
120
119
  - lib/ols/version.rb
121
120
  - ols.gemspec
121
+ - script/console
122
122
  - test/test_helper.rb
123
123
  - test/test_ols.rb
124
- has_rdoc: true
124
+ - test/test_ols_graph.rb
125
+ - test/test_ols_term.rb
125
126
  homepage: https://github.com/dazoakley/ols
126
127
  licenses: []
127
-
128
128
  post_install_message:
129
129
  rdoc_options: []
130
-
131
- require_paths:
130
+ require_paths:
132
131
  - lib
133
- required_ruby_version: !ruby/object:Gem::Requirement
132
+ required_ruby_version: !ruby/object:Gem::Requirement
134
133
  none: false
135
- requirements:
136
- - - ">="
137
- - !ruby/object:Gem::Version
138
- hash: -2283321119041692548
139
- segments:
140
- - 0
141
- version: "0"
142
- required_rubygems_version: !ruby/object:Gem::Requirement
134
+ requirements:
135
+ - - ! '>='
136
+ - !ruby/object:Gem::Version
137
+ version: '0'
138
+ required_rubygems_version: !ruby/object:Gem::Requirement
143
139
  none: false
144
- requirements:
145
- - - ">="
146
- - !ruby/object:Gem::Version
147
- hash: -2283321119041692548
148
- segments:
149
- - 0
150
- version: "0"
140
+ requirements:
141
+ - - ! '>='
142
+ - !ruby/object:Gem::Version
143
+ version: '0'
151
144
  requirements: []
152
-
153
145
  rubyforge_project: ols
154
- rubygems_version: 1.6.2
146
+ rubygems_version: 1.8.10
155
147
  signing_key:
156
148
  specification_version: 3
157
- summary: A simple wrapper around a local copy of the OLS database
158
- test_files:
149
+ summary: A simple wrapper around the EBI's Ontology Lookup Service (OLS)
150
+ test_files:
159
151
  - test/test_helper.rb
160
152
  - test/test_ols.rb
153
+ - test/test_ols_graph.rb
154
+ - test/test_ols_term.rb
155
+ has_rdoc: