ols-theme 0.8.0 → 0.9.0

data/_includes/people.html

@@ -1,89 +1,87 @@
 <div class="card people-card" id="{{ username }}">
-    <div class="card-content">
-      <div class="media">
-        <div class="media-left people-card-avatar">
-          <figure class="image is-64x64">
-            <img
-              class="is-rounded"
-              src="https://avatars.githubusercontent.com/{{ username }}"
-              alt="The GitHub avatar of {{ user.name }}"
-            />
-          </figure>
-        </div>
-        <div class="media-content people-card-meta">
-          <p class="title is-4">{{ user.first-name }} {{ user.last-name }}</p>
-  
-          <p class="is-6">
-            {% if user.pronouns %}
-            Pronouns: {{ user.pronouns }}<br>
-            {% endif %}
-  
-            {% if user.twitter %}
-            <a class="people-card-meta-twitter" href="https://twitter.com/{{ user.twitter }}"><i class="fab fa-twitter"></i> @{{ user.twitter }}</a><br>
-            {% endif %}
-            {% if user.website %}
-            <a href="{{ user.website }}"><i class="fas fa-globe"></i></a>
-            {% endif %}
-            {% if user.github != false %}
-            <a href="https://github.com/{{ username }}"><i class="fab fa-github"></i></a>
-            {% endif %}
-            {% if user.gitter %}
-            <a href="https://gitter.im/{{ user.gitter }}"><i class="fas fa-comments"></i></a>
-            {% endif %}
-            {% if user.orcid %}
-            <a href="https://orcid.org/{{ user.orcid }}"><i class="ai ai-orcid"></i></a>
+  <div class="card-content">
+    <div class="media">
+      <div class="media-left people-card-avatar">
+        <figure class="image is-64x64">
+          <img
+            class="is-rounded"
+            src="https://avatars.githubusercontent.com/{{ username }}"
+            alt="The GitHub avatar of {{ user.name }}"
+          />
+        </figure>
+      </div>
+      <div class="media-content people-card-meta">
+        <p class="title is-4">{{ user.first-name }} {{ user.last-name }}</p>
+
+        <p class="is-6">
+          {% if user.pronouns %}
+          Pronouns: {{ user.pronouns }}<br>
+          {% endif %}
+
+          {% if user.twitter %}
+          <a class="people-card-meta-twitter" href="https://twitter.com/{{ user.twitter }}"><i class="fab fa-twitter"></i> @{{ user.twitter }}</a><br>
+          {% endif %}
+          {% if user.website %}
+          <a href="{{ user.website }}"><i class="fas fa-globe"></i></a>
+          {% endif %}
+          {% if user.github != false %}
+          <a href="https://github.com/{{ username }}"><i class="fab fa-github"></i></a>
+          {% endif %}
+          {% if user.gitter %}
+          <a href="https://gitter.im/{{ user.gitter }}"><i class="fas fa-comments"></i></a>
+          {% endif %}
+          {% if user.orcid %}
+          <a href="https://orcid.org/{{ user.orcid }}"><i class="ai ai-orcid"></i></a>
+          {% endif %}
+
+          {% if user.affiliation or user.location.country %}
+            <br>
+            <i class="fas fa-map-marker-alt"></i>
+            {% assign delim = '' %}
+            {% if user.affiliation %}
+            {{ user.affiliation }}
+            {% assign delim = ', ' %}
             {% endif %}
-  
-            {% if user.affiliation or user.country %}
-              <br>
-              <i class="fas fa-map-marker-alt"></i>
-              {% assign delim = '' %}
-              {% if user.affiliation %}
-              {{ user.affiliation }}
-              {% assign delim = ', ' %}
-              {% endif %}
-              {% if user.country %}
-              {{ delim }}{{ user.country }}
-              {% endif %}
+            {% if user.location.country %}
+            {{ delim }}{{ user.location.country }}
             {% endif %}
-          </p>
-        </div>
-      </div>
-  
-      {% if ols-roles and ols-roles != '' or user.title %}
-      <p class="people-description">
-        Role in OLS:
-        {% if user.title %}
-          {{ user.title }}
-        {% endif %}
-        <br>
-        {% if ols-roles and ols-roles != '' %}
-          there
-          {{ ols-roles }}
-        {% endif %}
+          {% endif %}
         </p>
-      </p>
+      </div>
+    </div>
+
+    {% if user.title or ols-roles and ols-roles != '' %}
+    <p class="people-description">
+      Role in OLS:
+      {% if user.title %}
+        {{ user.title }}
+      <br>
       {% endif %}
-  
-      {% if user.expertise %}
-      <p class="people">
-        <div class="people-description-question">Expertise:</div> {{ user.expertise | join: ", " }}
-      </p>
+      {% if ols-roles and ols-roles != '' %}
+        {{ ols-roles }}
       {% endif %}
-  
-      <div class="people-description" id="people-bio">
-        {% if user.bio %}
-        <p class="people-description-question">
-          <a class="card-toggle">
-            More about {{ user.first-name }}
-            <i class="fa fa-angle-down"></i>
-          </a>
-        </p>
-        <div class="content is-hidden">
-          {{ user.bio | markdownify }}
-        </div>
-        {% endif %}
+    </p>
+    {% endif %}
+
+    {% if user.expertise %}
+    <p class="people">
+      <div class="people-description-question">Expertise:</div> {{ user.expertise | join: ", " }}
+    </p>
+    {% endif %}
+
+    <div class="people-description" id="people-bio">
+      {% if user.bio %}
+      <p class="people-description-question">
+        <a class="card-toggle">
+          More about {{ user.first-name }}
+          <i class="fa fa-angle-down"></i>
+        </a>
+      </p>
+      <div class="content is-hidden">
+        {{ user.bio | markdownify }}
       </div>
-      
+      {% endif %}
     </div>
-  </div>
+    
+  </div>
+</div>

data/_includes/projects-participants.html

@@ -0,0 +1,61 @@
+{% assign cohort = include.cohort %}
+{% assign people = site.data.people %}
+{% assign projects = site.data.openseeds[cohort].projects %}
+
+{% assign all-participants = '' %}
+{% for project in projects %}
+    {% assign p-pparticipants = '' %}
+    {% for p in project.participants %}
+        {% capture all-participants %}{{ all-participants}}, {{ p }}{% endcapture %}
+    {% endfor %}
+{% endfor %}
+
+{% assign p-participants = all-participants | remove_first: ', ' | split: ", " | uniq | sort %}
+
+Participants join this program with a project that they either are already working on or want to develop during this program.
+
+For this round of the OLS program, we are happy to have [{{ p-participants | size }} participants](#participants) with [{{ projects | size }} projects](#projects).
+
+# Projects
+
+{% for project in projects %}
+    {% if project.visible != false %}
+        {% assign p-pparticipants = '' %}
+        {% for p in project.participants %}
+            {% capture p-pparticipants %}{{ p-pparticipants }}, ![](https://avatars.githubusercontent.com/{{ p }}){: .people-badge} [{{ people[p].first-name }} {{ people[p].last-name }}](#{{ p }}){% endcapture %}
+        {% endfor %}
+        {% assign mentor = project.mentor %}
+        {% capture p-mentors %}
+        {% for p in project.mentors %}with ![](https://avatars.githubusercontent.com/{{ p }}){: .people-badge} [{{ people[p].first-name }} {{ people[p].last-name }}]({% link people.md %}#{{ p }})
+        {% endfor %}
+        {% endcapture %}
+
+## {{ project.name }}
+
+**By**: {{ p-pparticipants | remove_first: ', ' }}
+
+**Mentored by**: {{ p-mentors | remove_first: 'with ' }}
+
+{% if project.status %}
+**Status**: {{ project.status }}
+{% endif %}
+
+    {% capture difference %} {{ project.keywords | size | minus:1 }} {% endcapture %}
+    {% unless difference contains '-' %}
+**Keywords**: {{ project.keywords | join: ', ' }}
+    {% endunless %}
+
+{{ project.description }}
+
+    {% endif %}
+{% endfor %}
+
+# Participants
+
+<div class="people">
+{% for entry in p-participants %}
+    {% assign username = entry %}
+    {% assign user = people[username] %}
+    {% include _includes/people.html username=username user=user %}
+{% endfor %}
+</div>

data/_includes/schedule.md

@@ -1,2 +1,123 @@
-{% include _includes/overall-schedule.md %}
-{% include _includes/detailed-schedule.md %}
+<script type="application/ld+json" >
+{%- assign sep="" -%}
+[
+{%- for w in schedule.weeks -%}
+    {%- for c in w[1].calls -%}
+        {%- if c.type == "Cohort" -%} {% capture name %}{{ c.type }} call for the week {{ w[0] }} of {{ cohort }} cohort of {{ site.title }}: {{ c.title }}{% endcapture %}
+    {{ sep }}{
+        "@context": "https://schema.org",
+        "@type": "Course",
+        "@id": "{{ site.url }}/{{ cohort }}/schedule#week-{{ w[0] }}",
+        "dct:conformsTo": {
+            "https://purl.org/dc/terms/conformsTo": {
+                "@id": "https://bioschemas.org/profiles/Course/1.0-RELEASE",
+                "@type": "CreativeWork"
+            }
+        },
+        "description": "{{ site.title }} is a mentoring mentoring & training program for Open Science ambassadors. It runs cohorts with calls every 1-2 weeks. This course is a {{ name }}",
+        "keywords": "Open Science",
+        "name": "{{ name }}",
+        "about": {
+            "@type": "DefinedTerm",
+            "@id": "https://edamontology.org/topic_4010",
+            "inDefinedTermSet": "https://edamontology.org",
+            "termCode": "topic_4010",
+            "name": "Open Science",
+            "url": "https://bioportal.bioontology.org/ontologies/EDAM/?p=classes&conceptid=http%3A%2F%2Fedamontology.org%2Ftopic_4010"
+        },
+        "educationalLevel": "Beginner",
+        "inLanguage": "en-US",
+        "hasCourseInstance": {
+            "@context": "https://schema.org",
+            "@type": "CourseInstance",
+            "dct:conformsTo": {
+                "https://purl.org/dc/terms/conformsTo": {
+                    "@id": "https://bioschemas.org/profiles/CourseInstance/1.0-RELEASE",
+                    "@type": "CreativeWork"
+                }
+            },
+            "courseMode": ["online", "synchronous"],
+            "startDate" : "{{ c.date | date: "%Y-%m-%d" }}",
+            "endDate" :"{{ c.date | date: "%Y-%m-%d" }}",
+            "inLanguage": "en-US",
+            "duration": "{{ c.duration }}",
+            "name" : "{{ c.title }}"
+        },
+        "hasPart": [
+            {
+                "@context": "https://schema.org",
+                "@type": "LearningResource",
+                "dct:conformsTo": {
+                    "https://purl.org/dc/terms/conformsTo": {
+                        "@id": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
+                        "@type": "CreativeWork"
+                    }
+                },
+                "description": "Notes and recording for {{ name }}",
+                "keywords": "Open Science",
+                "name": "Notes and recording for {{ name }}",
+                "about": {
+                    "@type": "DefinedTerm",
+                    "@id": "https://edamontology.org/topic_4010",
+                    "inDefinedTermSet": "https://edamontology.org",
+                    "termCode": "topic_4010",
+                    "name": "Open Science",
+                    "url": "https://bioportal.bioontology.org/ontologies/EDAM/?p=classes&conceptid=http%3A%2F%2Fedamontology.org%2Ftopic_4010"
+                },
+                "educationalLevel": "Beginner",
+                "hasPart": [
+                    {
+                        "@type": "CreativeWork",
+                        "url": "{{ c.notes }}",
+                        "name": "Notes for {{ name }}"
+                    }{% if c.recording %},
+                    {
+                        "@type": "CreativeWork",
+                        "url": "{{ c.recording }}",
+                        "name": "Recording for {{ name }}"
+                    }{% endif %}
+                ],
+                "inLanguage": "en-US",
+                "learningResourceType": ["handout", "video"],
+                "license": "https://creativecommons.org/licenses/by-sa/4.0/",
+                "contributor":  [
+                    {
+                        "@type": "Organization",
+                        "name": "Open Life Science",
+                        "email": "{{ site.email }}",
+                        "url": "{{ site.url }}"
+                    }
+                    {%- for r in c.resources -%}{% if r.type == 'slides' and r.speaker %}
+                    ,{
+                        "@type": "Person",
+                        "name": "{{ site.data.people[r.speaker].first-name }} {{ site.data.people[r.speaker].last-name }}",
+                        "url": "{{ site.url }}/people#{{ r.speaker }}"
+                    }
+                    {% endif %}{%- endfor -%}
+                    {%- if c.hosts -%}{% for r in c.hosts %}
+                    ,{
+                        "@type": "Person",
+                        "name": "{{ site.data.people[r].first-name }} {{ site.data.people[r].last-name }}",
+                        "url": "{{ site.url }}/people#{{ r }}"
+                    }
+                    {% endfor %}{%- endif -%}
+                ]
+            }
+        ],
+        "license": "https://creativecommons.org/licenses/by-sa/4.0/",
+        "provider":  [{
+            "@type": "Organization",
+            "name": "Open Life Science",
+            "email": "{{ site.email }}",
+            "url": "{{ site.url }}"
+        }]
+    }      
+        {%- assign sep="," -%}
+        {%- endif -%}
+    {%- endfor -%}
+{%- endfor -%}
+]
+</script>
+
+{% include _includes/overall-schedule.md %}
+{% include _includes/detailed-schedule.md %}

data/_includes/timeline.md

@@ -1,24 +1,24 @@
-{% for e in schedule.timeline %}
-{% assign type = '' %}
-{% if e.type %}
-    {% for t in e.type %}
-        {% capture type %}{{ type }} + {% if t == 'Talk' %}<i class="fas fa-chalkboard-teacher"></i> Talk{% elsif t == 'Q&A' %}<i class="fas fa-question"></i> Q&A{% elsif t == 'Recording' %}<i class="fab fa-youtube"></i> Recording{% endif %}{% endcapture %}
-    {% endfor %}
-    {% assign type = type | remove_first: ' + ' %}
-{% endif %}
-{% if e.date %}
-- **{{ e.date }}** {% if e.time %}([{{ e.time }} Universal Time](https://arewemeetingyet.com/UTC/{{ e.date | date: "%Y-%m-%d" }}/{{ e.time }}/OLS%20Application%20Call)){% endif %}: {{ e.description }}{% if e.type %}({{ type }}){% endif %}{% if e.notes %} - <i class="fas fa-clipboard"></i> [Notes with Zoom call link]({{ e.notes }}){% endif %}{% if e.recording %} - <i class="fab fa-youtube"></i> [Recording]({{ e.recording }}){% endif %}{% if e.details %}
-
-    {{ e.details }}
-
-{% endif %}
-{% endif %}
-{% endfor %}
-- **{{ schedule.weeks['01'].start }}**: Start of the program
-
-{% assign end = '' %}
-{% for w in schedule.weeks %}
-{% assign end = w[1].start %}
-{% endfor %}
-- **{{ end }}**: End of the program
-
+{% for e in schedule.timeline %}
+{% assign type = '' %}
+{% if e.type %}
+    {% for t in e.type %}
+        {% capture type %}{{ type }} + {% if t == 'Talk' %}<i class="fas fa-chalkboard-teacher"></i> Talk{% elsif t == 'Q&A' %}<i class="fas fa-question"></i> Q&A{% elsif t == 'Recording' %}<i class="fab fa-youtube"></i> Recording{% endif %}{% endcapture %}
+    {% endfor %}
+    {% assign type = type | remove_first: ' + ' %}
+{% endif %}
+{% if e.date %}
+- **{{ e.date }}** {% if e.time %}([{{ e.time }} Universal Time](https://arewemeetingyet.com/UTC/{{ e.date | date: "%Y-%m-%d" }}/{{ e.time }}/OLS%20Application%20Call)){% endif %}: {{ e.description }}{% if e.type %}({{ type }}){% endif %}{% if e.notes %} - <i class="fas fa-clipboard"></i> [Notes with Zoom call link]({{ e.notes }}){% endif %}{% if e.recording %} - <i class="fab fa-youtube"></i> [Recording]({{ e.recording }}){% endif %}{% if e.details %}
+
+    {{ e.details }}
+
+{% endif %}
+{% endif %}
+{% endfor %}
+- **{{ schedule.weeks['01'].start }}**: Start of the program
+
+{% assign end = '' %}
+{% for w in schedule.weeks %}
+{% assign end = w[1].start %}
+{% endfor %}
+- **{{ end }}**: End of the program
+

data/_includes/toc.html

@@ -1,12 +1,12 @@
 <div class="toc">
-    <h1 class="no_toc">
-        <a class="card-toggle">
-            Table of content
-            <i class="fa fa-angle-down"></i>
-        </a>
-    </h1>
-    <div class="content is-hidden">
-    1. TOC
-    {:toc}
-    </div>
-    </div>
+<h1 class="no_toc">
+    <a class="card-toggle">
+        Table of content
+        <i class="fa fa-angle-down"></i>
+    </a>
+</h1>
+<div class="content is-hidden">
+1. TOC
+{:toc}
+</div>
+</div>

data/_includes/week.md

@@ -1,50 +1,55 @@
-{% for c in week.calls %}
-
-## {{ c.type }} call: {{ c.title }}
-
-{% if c.type != "Mentor-Mentee" and c.date %}
-<i class="fas fa-calendar-alt"></i> **Date**: {{ c.date }}{% if c.time %}, at [{{ c.time }} Universal Time](https://arewemeetingyet.com/UTC/{{ c.date | date: "%Y-%m-%d" }}/{{ c.time }}/
-{{ cohort | upcase }}%20Cohort%20Call%20(Week%20{{ week-nb }})) ([<i class="fas fa-calendar-plus"></i> *Add to your calendar*]({{ c.calendar-event }})){% endif %}
-{% else %}
-<i class="fas fa-calendar-alt"></i> **Date**: During the week starting on {{ week.start }} (to define with mentors)
-{% endif %}
-
-<i class="fas fa-clock"></i> **Duration**: {{ c.duration }}
-
-{% if c.hosts %}
-{% assign hosts = '' %}
-{% for p in c.hosts %}{% capture hosts %}{{ hosts }}, {{ site.data.people[p].first-name }} {{ site.data.people[p].last-name }}{% endcapture %}{% endfor %}
-<i class="fas fa-user-friends"></i> **Hosts**: {{ hosts | remove_first: ', ' }}
-{% endif %}
-
-{% if c.content %}
-### In this call
-
-{{ c.content | markdownify }}
-
-{% endif %}
-
-{% if c.type == "Cohort" %}
-
-**Resources**:
-- <i class="fas fa-clipboard"></i> [Notes]({{ c.notes }})
-- <i class="fab fa-youtube"></i> {% if c.recording %} [Recording]({{ c.recording }}) {% else %} Recording available on the [OLS YouTube channel]({{ site.youtube }}) after the call {% endif %}
-{% for r in c.resources %}
-- {% if r.type == 'slides' %}<i class="fas fa-file-powerpoint"></i>{% elsif r.type == 'document' %} <i class="fas fa-file"></i>{% elsif r.type == 'external-link' %} <i class="fas fa-external-link-square-alt"></i>{% endif %} {% if r.link %} [{{ r.title }}]({{ r.link }}){% else %} {{ r.title }}{% endif %}{% if r.type == 'slides' and r.speaker %}{% if site.data.people[r.speaker].first-name %}, by [{{ site.data.people[r.speaker].first-name }} {{ site.data.people[r.speaker].last-name }}](/{{ cohort }}#{{ r.speaker }}){% endif %} {% endif %}
-{% endfor %}
-
-{% endif %}
-
-{% if c.before %}
-### Before the call
-
-{{ c.before | markdownify }}
-{% endif %}
-
-{% if c.after %}
-### After the call
-
-{{ c.after | markdownify }}
-{% endif %}
-
+{% for c in week.calls %}
+
+## {{ c.type }} call: {{ c.title }}
+
+{% if c.type != "Mentor-Mentee" and c.date %}
+<i class="fas fa-calendar-alt"></i> **Date**: {{ c.date }}{% if c.time %}, at [{{ c.time }} Universal Time](https://arewemeetingyet.com/UTC/{{ c.date | date: "%Y-%m-%d" }}/{{ c.time }}/
+{{ cohort | upcase }}%20Cohort%20Call%20(Week%20{{ week-nb }})) {% if c.calendar-event %}([<i class="fas fa-calendar-plus"></i> *Add to your calendar*]({{ c.calendar-event }})){% endif %}{% endif %}
+{% else %}
+<i class="fas fa-calendar-alt"></i> **Date**: During the week starting on {{ week.start }} (to define with mentors)
+{% endif %}
+
+<i class="fas fa-clock"></i> **Duration**: {{ c.duration }}
+
+{% if c.hosts %}
+{% assign hosts = '' %}
+{% for p in c.hosts %}{% capture hosts %}{{ hosts }}, {{ site.data.people[p].first-name }} {{ site.data.people[p].last-name }}{% endcapture %}{% endfor %}
+<i class="fas fa-user-friends"></i> **Hosts**: {{ hosts | remove_first: ', ' }}
+{% endif %}
+
+{% if c.content %}
+### In this call
+
+{{ c.content | markdownify }}
+
+{% endif %}
+
+{% if c.type == "Cohort" %}
+
+**Talks**
+{% for r in c.talks %}
+- <i class="fas fa-file-powerpoint"></i>{% if r.link %} [{{ r.title }}]({{ r.link }}){% else %} {{ r.title }}{% endif %}{% if r.speaker %}{% if site.data.people[r.speaker].first-name %}, by [{{ site.data.people[r.speaker].first-name }} {{ site.data.people[r.speaker].last-name }}](/{{ cohort }}#{{ r.speaker }}){% endif %}{% endif %}
+{% endfor %}
+
+**Resources**:
+- <i class="fas fa-clipboard"></i> [Notes]({{ c.notes }})
+- <i class="fab fa-youtube"></i> {% if c.recording %} [Recording]({{ c.recording }}) {% else %} Recording available on the [OLS YouTube channel]({{ site.youtube }}) after the call {% endif %}
+{% for r in c.resources %}
+- {% if r.type == 'slides' %}<i class="fas fa-file-powerpoint"></i>{% elsif r.type == 'document' %} <i class="fas fa-file"></i>{% elsif r.type == 'external-link' %} <i class="fas fa-external-link-square-alt"></i>{% endif %} {% if r.link %} [{{ r.title }}]({{ r.link }}){% else %} {{ r.title }}{% endif %}
+{% endfor %}
+
+{% endif %}
+
+{% if c.before %}
+### Before the call
+
+{{ c.before | markdownify }}
+{% endif %}
+
+{% if c.after %}
+### After the call
+
+{{ c.after | markdownify }}
+{% endif %}
+
 {% endfor %}