oddb2xml 3.0.5 → 3.0.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +3 -1
- data/History.txt +7 -0
- data/lib/oddb2xml/fhir_support.rb +52 -2
- data/lib/oddb2xml/version.rb +1 -1
- data/oddb2xml.gemspec +1 -0
- data/spec/data/fhir/cyramza.ndjson +1 -0
- data/spec/fhir_spec.rb +53 -0
- metadata +19 -1
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA256:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 8b3a91c4a9ff36983011294c705fd882a5cf2a7f60f972cd1e2de61877e353db
|
|
4
|
+
data.tar.gz: 7eb411ee5192d1a1eec417536e62761c5cbb833a075221ae283f1de577f5a4f6
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 92721b900cb1f754d87463c8a22fd552eabceee1ec12e16aca202084bfd18fa03f4def7ea3c2232ba4598d225c49f165a9c49cf995aae54f9a655d8551cb7267
|
|
7
|
+
data.tar.gz: ef7383d72a3535996c70d9d723b12649b09927cff97b9575e49f15553c87c92d142c940eded2fd22d4ef8399bf6f7d2538c72e413623485150837bfa43d0faf1
|
data/Gemfile.lock
CHANGED
|
@@ -1,7 +1,8 @@
|
|
|
1
1
|
PATH
|
|
2
2
|
remote: .
|
|
3
3
|
specs:
|
|
4
|
-
oddb2xml (3.0.
|
|
4
|
+
oddb2xml (3.0.6)
|
|
5
|
+
csv
|
|
5
6
|
htmlentities
|
|
6
7
|
httpi
|
|
7
8
|
mechanize (>= 2.8.5)
|
|
@@ -43,6 +44,7 @@ GEM
|
|
|
43
44
|
crack (1.0.1)
|
|
44
45
|
bigdecimal
|
|
45
46
|
rexml
|
|
47
|
+
csv (3.3.5)
|
|
46
48
|
diff-lcs (1.6.2)
|
|
47
49
|
domain_name (0.6.20240107)
|
|
48
50
|
flexmock (3.0.2)
|
data/History.txt
CHANGED
|
@@ -1,3 +1,10 @@
|
|
|
1
|
+
=== 3.0.6 / 06.05.2026
|
|
2
|
+
* FHIR: extract Indikationscode (XXXXX.NN) from ClinicalUseDefinition resources by combining FOPHDossierNumber with each CUD's .NN id-suffix; expose as item[:indication_codes] (and per package) so downstream builders can include it on prescriptions and invoices as required by BAG from 2026-07-01 (issue #113)
|
|
3
|
+
* Declare csv as a runtime dependency in the gemspec (csv was removed from Ruby's default gems in 3.4)
|
|
4
|
+
|
|
5
|
+
=== 3.0.5 / 25.04.2026
|
|
6
|
+
* Refdata cleanup: compensate the doubled-dose template bug in Refdata.Articles.xml (e.g. "30 mg / 30 mg / 100 Tablette") by collapsing to a single token. Guarded by a Swissmedic-side comma check so real combination products are untouched (issue #112)
|
|
7
|
+
|
|
1
8
|
=== 3.0.4 / 24.04.2026
|
|
2
9
|
* Firstbase: switch -b/--firstbase from the deprecated pillbox.oddb.org XLSX to the GS1 Switzerland CSV at https://id.gs1.ch/01/07612345000961 (full firstbase barcode registry, ~189k items). Downloaded file is now firstbase.csv; FirstbaseExtractor now parses CSV with headers instead of XLSX.
|
|
3
10
|
|
|
@@ -159,7 +159,7 @@ module Oddb2xml
|
|
|
159
159
|
module FHIR
|
|
160
160
|
# Bundle represents one line in the NDJSON file
|
|
161
161
|
class Bundle
|
|
162
|
-
attr_reader :medicinal_product, :packages, :authorizations, :ingredients
|
|
162
|
+
attr_reader :medicinal_product, :packages, :authorizations, :ingredients, :clinical_use_definitions
|
|
163
163
|
|
|
164
164
|
def initialize(json_line)
|
|
165
165
|
data = JSON.parse(json_line)
|
|
@@ -174,6 +174,7 @@ module Oddb2xml
|
|
|
174
174
|
@packages = []
|
|
175
175
|
@authorizations = []
|
|
176
176
|
@ingredients = []
|
|
177
|
+
@clinical_use_definitions = []
|
|
177
178
|
|
|
178
179
|
@entries.each do |entry|
|
|
179
180
|
resource = entry["resource"]
|
|
@@ -186,11 +187,32 @@ module Oddb2xml
|
|
|
186
187
|
@authorizations << Authorization.new(resource)
|
|
187
188
|
when "Ingredient"
|
|
188
189
|
@ingredients << Ingredient.new(resource)
|
|
190
|
+
when "ClinicalUseDefinition"
|
|
191
|
+
@clinical_use_definitions << ClinicalUseDefinition.new(resource)
|
|
189
192
|
end
|
|
190
193
|
end
|
|
191
194
|
end
|
|
192
195
|
end
|
|
193
196
|
|
|
197
|
+
# ClinicalUseDefinition carries one indication. Its `id` ends in ".NN",
|
|
198
|
+
# the per-indication suffix that combines with the FOPHDossierNumber
|
|
199
|
+
# (XXXXX) on the reimbursement RegulatedAuthorization to form the
|
|
200
|
+
# Indikationscode XXXXX.NN required by BAG from 2026-07-01.
|
|
201
|
+
class ClinicalUseDefinition
|
|
202
|
+
attr_reader :id, :nn_suffix, :type, :text
|
|
203
|
+
|
|
204
|
+
def initialize(resource)
|
|
205
|
+
@id = resource["id"]
|
|
206
|
+
@type = resource["type"]
|
|
207
|
+
@nn_suffix = @id&.[](/\.(\d{2})\z/, 1)
|
|
208
|
+
@text = resource.dig("indication", "diseaseSymptomProcedure", "concept", "text")
|
|
209
|
+
end
|
|
210
|
+
|
|
211
|
+
def indication?
|
|
212
|
+
@type == "indication"
|
|
213
|
+
end
|
|
214
|
+
end
|
|
215
|
+
|
|
194
216
|
class MedicinalProduct
|
|
195
217
|
attr_reader :names, :atc_code, :classification, :it_codes
|
|
196
218
|
|
|
@@ -427,6 +449,11 @@ module Oddb2xml
|
|
|
427
449
|
prep.OrgGenCode = map_org_gen_code(mp.classification)
|
|
428
450
|
prep.ItCode = mp.it_code # Add IT code
|
|
429
451
|
|
|
452
|
+
# Indikationscodes (BAG: XXXXX.NN, mandatory on prescriptions/invoices
|
|
453
|
+
# from 2026-07-01). Build from FOPHDossierNumber (reimbursement auth)
|
|
454
|
+
# plus each ClinicalUseDefinition's .NN suffix. See issue #113.
|
|
455
|
+
prep.IndicationCodes = build_indication_codes(bundle)
|
|
456
|
+
|
|
430
457
|
# Map packages
|
|
431
458
|
prep.Packs = OpenStruct.new
|
|
432
459
|
prep.Packs.Pack = bundle.packages.map do |pkg|
|
|
@@ -535,6 +562,21 @@ module Oddb2xml
|
|
|
535
562
|
reimbursement&.cost_share
|
|
536
563
|
end
|
|
537
564
|
|
|
565
|
+
def build_indication_codes(bundle)
|
|
566
|
+
reimbursement = bundle.authorizations.find(&:reimbursement_sl?)
|
|
567
|
+
dossier = reimbursement&.foph_dossier_no
|
|
568
|
+
return [] unless dossier && !bundle.clinical_use_definitions.empty?
|
|
569
|
+
|
|
570
|
+
bundle.clinical_use_definitions.each_with_object([]) do |cud, acc|
|
|
571
|
+
next unless cud.indication? && cud.nn_suffix
|
|
572
|
+
acc << OpenStruct.new(
|
|
573
|
+
code: "#{dossier}.#{cud.nn_suffix}",
|
|
574
|
+
cud_id: cud.id,
|
|
575
|
+
text: cud.text
|
|
576
|
+
)
|
|
577
|
+
end
|
|
578
|
+
end
|
|
579
|
+
|
|
538
580
|
def map_org_gen_code(classification)
|
|
539
581
|
return nil unless classification
|
|
540
582
|
|
|
@@ -616,6 +658,13 @@ module Oddb2xml
|
|
|
616
658
|
item[:comment_it] = ""
|
|
617
659
|
item[:it_code] = (itc = seq.ItCode) ? itc : "" # NOW available in FHIR!
|
|
618
660
|
|
|
661
|
+
# Indikationscodes (BAG XXXXX.NN, see issue #113). Each entry is a
|
|
662
|
+
# Hash with :code, :cud_id, :text — mandatory on rx/invoices from
|
|
663
|
+
# 2026-07-01.
|
|
664
|
+
item[:indication_codes] = Array(seq.IndicationCodes).map do |ic|
|
|
665
|
+
{code: ic.code, cud_id: ic.cud_id, text: ic.text}
|
|
666
|
+
end
|
|
667
|
+
|
|
619
668
|
# Build substances array
|
|
620
669
|
item[:substances] = []
|
|
621
670
|
if seq.Substances && seq.Substances.Substance
|
|
@@ -673,7 +722,8 @@ module Oddb2xml
|
|
|
673
722
|
sl_entry: true,
|
|
674
723
|
swissmedic_category: (cat = pac.SwissmedicCategory) ? cat : "",
|
|
675
724
|
swissmedic_number8: (num = pac.SwissmedicNo8) ? num : "",
|
|
676
|
-
prices: {exf_price: exf, pub_price: pub}
|
|
725
|
+
prices: {exf_price: exf, pub_price: pub},
|
|
726
|
+
indication_codes: item[:indication_codes]
|
|
677
727
|
}
|
|
678
728
|
|
|
679
729
|
# Map limitations from FHIR
|
data/lib/oddb2xml/version.rb
CHANGED
data/oddb2xml.gemspec
CHANGED
|
@@ -38,6 +38,7 @@ Gem::Specification.new do |spec|
|
|
|
38
38
|
spec.add_dependency "htmlentities"
|
|
39
39
|
spec.add_dependency "webrick", ">= 1.8.2"
|
|
40
40
|
spec.add_dependency "rexml", ">= 3.3.9"
|
|
41
|
+
spec.add_dependency "csv" # bundled with Ruby <= 3.3, gem from 3.4 onwards
|
|
41
42
|
spec.add_dependency "standardrb"
|
|
42
43
|
spec.add_dependency "rack", ">= 3.1.20"
|
|
43
44
|
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"resourceType":"Bundle","id":"9a91dc6e-3410-4020-9375-b2cae207e1bf","meta":{"profile":["http://fhir.ch/ig/ch-epl/StructureDefinition/ch-idmp-bundle"]},"type":"collection","entry":[{"fullUrl":"http://fhir.epl.bag.admin.ch/MedicinalProductDefinition/de872be1-02ff-4b8e-8691-658099182eb7","resource":{"resourceType":"MedicinalProductDefinition","id":"de872be1-02ff-4b8e-8691-658099182eb7","meta":{"profile":["http://fhir.ch/ig/ch-epl/StructureDefinition/ch-idmp-medicinalproductdefinition"]},"text":{"status":"generated","div":"<div xmlns=\"http://www.w3.org/1999/xhtml\">Cyramza Inf Konz 100 mg/10 ml</div>"},"classification":[{"coding":[{"system":"http://www.whocc.no/atc","code":"L01FG02","display":"Ramucirumab"}]},{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-index-therapeuticus","code":"070000","display":"07. STOFFWECHSEL"}]},{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-index-therapeuticus","code":"071600","display":"07.16. Oncologica"}]},{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-index-therapeuticus","code":"071610","display":"07.16.10. Cytostatica"}]}],"name":[{"productName":"Cyramza Inf Konz 100 mg/10 ml","usage":[{"country":{"coding":[{"system":"urn:iso:std:iso:3166","code":"CH","display":"Switzerland"}]},"language":{"coding":[{"system":"urn:ietf:bcp:47","code":"de-CH","display":"German (Switzerland)"}]}}]},{"productName":"Cyramza conc perf 100 mg/10 ml","usage":[{"country":{"coding":[{"system":"urn:iso:std:iso:3166","code":"CH","display":"Switzerland"}]},"language":{"coding":[{"system":"urn:ietf:bcp:47","code":"fr-CH","display":"French (Switzerland)"}]}}]},{"productName":"Cyramza Inf Konz 100 mg/10 ml","usage":[{"country":{"coding":[{"system":"urn:iso:std:iso:3166","code":"CH","display":"Switzerland"}]},"language":{"coding":[{"system":"urn:ietf:bcp:47","code":"it-CH","display":"Italian (Switzerland)"}]}}]}]}},{"fullUrl":"http://fhir.epl.bag.admin.ch/RegulatedAuthorization/65206","resource":{"resourceType":"RegulatedAuthorization","id":"65206","meta":{"profile":["http://fhir.ch/ig/ch-epl/StructureDefinition/ch-idmp-regulatedauthorization"]},"text":{"status":"generated","div":"<div xmlns=\"http://www.w3.org/1999/xhtml\">Marketing Authorisation 65206 for MedicinalProductDefinition de872be1-02ff-4b8e-8691-658099182eb7</div>"},"contained":[{"resourceType":"Organization","id":"7601001261853","meta":{"profile":["http://fhir.ch/ig/ch-epl/StructureDefinition/ch-idmp-organization"]},"identifier":[{"system":"urn:oid:2.51.1.3","value":"7601001261853"}],"name":"Eli Lilly (Suisse) SA"}],"identifier":[{"system":"http://fhir.ch/ig/ch-epl/sid/authno","value":"65206"}],"subject":[{"reference":"CHIDMPMedicinalProductDefinition/de872be1-02ff-4b8e-8691-658099182eb7"}],"type":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-authorisation-type","code":"756000002001","display":"Marketing Authorisation"}]},"region":[{"coding":[{"system":"urn:iso:std:iso:3166","code":"CH","display":"Switzerland"}]}],"holder":{"reference":"#7601001261853"}}},{"fullUrl":"http://fhir.epl.bag.admin.ch/PackagedProductDefinition/c3a247c9-d686-49ab-9344-892d8b93f148","resource":{"resourceType":"PackagedProductDefinition","id":"c3a247c9-d686-49ab-9344-892d8b93f148","meta":{"profile":["http://fhir.ch/ig/ch-epl/StructureDefinition/ch-idmp-packagedproductdefinition"]},"text":{"status":"generated","div":"<div xmlns=\"http://www.w3.org/1999/xhtml\">Cyramza Inf Konz 100 mg/10 ml Durchstf 1 Stk</div>"},"packageFor":[{"reference":"CHIDMPMedicinalProductDefinition/de872be1-02ff-4b8e-8691-658099182eb7"}],"containedItemQuantity":[{"unit":"Durchstf 1 Stk"}],"description":"Cyramza Inf Konz 100 mg/10 ml Durchstf 1 Stk","legalStatusOfSupply":[{"code":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-SMC-legal-status-of-supply","code":"756005022001","display":"Medicinal product subject to medical or veterinary prescription single dispensation (A)"}]}}],"packaging":{"identifier":[{"system":"urn:oid:2.51.1.1","value":"7680652060015"}]}}},{"fullUrl":"http://fhir.epl.bag.admin.ch/RegulatedAuthorization/65206001-c3a247c9-d686-49ab-9344-892d8b93f148","resource":{"resourceType":"RegulatedAuthorization","id":"65206001-c3a247c9-d686-49ab-9344-892d8b93f148","meta":{"profile":["http://fhir.ch/ig/ch-epl/StructureDefinition/ch-idmp-regulatedauthorization"]},"text":{"status":"generated","div":"<div xmlns=\"http://www.w3.org/1999/xhtml\">Marketing Authorisation 65206001-c3a247c9-d686-49ab-9344-892d8b93f148 for PackagedProductDefinition c3a247c9-d686-49ab-9344-892d8b93f148</div>"},"contained":[{"resourceType":"Organization","id":"7601001261853","meta":{"profile":["http://fhir.ch/ig/ch-epl/StructureDefinition/ch-idmp-organization"]},"identifier":[{"system":"urn:oid:2.51.1.3","value":"7601001261853"}],"name":"Eli Lilly (Suisse) SA"}],"identifier":[{"system":"http://fhir.ch/ig/ch-epl/sid/authno","value":"65206001"}],"subject":[{"reference":"CHIDMPPackagedProductDefinition/c3a247c9-d686-49ab-9344-892d8b93f148"}],"type":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-authorisation-type","code":"756000002001","display":"Marketing Authorisation"}]},"region":[{"coding":[{"system":"urn:iso:std:iso:3166","code":"CH","display":"Switzerland"}]}],"holder":{"reference":"#7601001261853"}}},{"fullUrl":"http://fhir.epl.bag.admin.ch/RegulatedAuthorization/9c50920a-2d9d-476f-89d8-9477c8840de9","resource":{"resourceType":"RegulatedAuthorization","id":"9c50920a-2d9d-476f-89d8-9477c8840de9","meta":{"profile":["http://fhir.ch/ig/ch-epl/StructureDefinition/ch-idmp-regulatedauthorization"]},"text":{"status":"generated","div":"<div xmlns=\"http://www.w3.org/1999/xhtml\">Reimbursement SL 9c50920a-2d9d-476f-89d8-9477c8840de9 for PackagedProductDefinition c3a247c9-d686-49ab-9344-892d8b93f148</div>"},"contained":[{"resourceType":"Organization","id":"7601001261853","meta":{"profile":["http://fhir.ch/ig/ch-epl/StructureDefinition/ch-idmp-organization"]},"identifier":[{"system":"urn:oid:2.51.1.3","value":"7601001261853"}],"name":"Eli Lilly (Suisse) SA"}],"extension":[{"url":"http://fhir.ch/ig/ch-epl/StructureDefinition/reimbursementSL","extension":[{"url":"FOPHDossierNumber","valueIdentifier":{"system":"urn:oid:2.16.756.1","value":"20403"}},{"url":"status","valueCodeableConcept":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-reimbursement-status","code":"756001021001","display":"Reimbursed"}]}},{"url":"statusDate","valueDate":"2019-06-01"},{"url":"listingStatus","valueCodeableConcept":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-listing-status","code":"756001002001","display":"Listed"}]}},{"url":"listingPeriod","valuePeriod":{"start":"2019-06-01"}},{"url":"firstListingDate","valueDate":"2016-03-01"},{"url":"costShare","valueInteger":10},{"url":"priceModel","valueBoolean":true},{"url":"http://fhir.ch/ig/ch-epl/StructureDefinition/productPrice","extension":[{"url":"type","valueCodeableConcept":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-price-type","code":"756002005001","display":"Retail price"}]}},{"url":"changeType","valueCodeableConcept":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-type-of-price-change","code":"756002006009","display":"Normal price mutation"}]}},{"url":"value","valueMoney":{"value":421.65,"currency":"CHF"}},{"url":"changeDate","valueDate":"2024-10-01"}]},{"url":"http://fhir.ch/ig/ch-epl/StructureDefinition/productPrice","extension":[{"url":"type","valueCodeableConcept":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-price-type","code":"756002005002","display":"Ex-factory price"}]}},{"url":"changeType","valueCodeableConcept":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-type-of-price-change","code":"756002006009","display":"Normal price mutation"}]}},{"url":"value","valueMoney":{"value":372.61,"currency":"CHF"}},{"url":"changeDate","valueDate":"2024-10-01"}]}]}],"subject":[{"reference":"CHIDMPPackagedProductDefinition/c3a247c9-d686-49ab-9344-892d8b93f148"}],"type":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-authorisation-type","code":"756000002003","display":"Reimbursement SL"}]},"indication":[{"extension":[{"url":"http://fhir.ch/ig/ch-epl/StructureDefinition/regulatedAuthorization-limitation","extension":[{"url":"status","valueCodeableConcept":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-limitationstatus","code":"756002071001","display":"Limitation Reimbursed"}]}},{"url":"statusDate","valueDate":"2024-10-01"},{"url":"period","valuePeriod":{"start":"2024-10-01"}},{"url":"firstLimitationDate","valueDate":"2016-03-01"},{"url":"indicationCode","valueString":"20403.01"},{"url":"limitationIndication","valueReference":{"reference":"ClinicalUseDefinition/CYRAMZA.01"}}]}]},{"extension":[{"url":"http://fhir.ch/ig/ch-epl/StructureDefinition/regulatedAuthorization-limitation","extension":[{"url":"status","valueCodeableConcept":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-epl-foph-limitationstatus","code":"756002071001","display":"Limitation Reimbursed"}]}},{"url":"statusDate","valueDate":"2024-10-01"},{"url":"period","valuePeriod":{"start":"2024-10-01","end":"2027-09-30"}},{"url":"reimbursementEndDate","valueDate":"2027-12-31"},{"url":"firstLimitationDate","valueDate":"2016-03-01"},{"url":"indicationCode","valueString":"20403.02"},{"url":"limitationIndication","valueReference":{"reference":"ClinicalUseDefinition/CYRAMZA.02"}}]}]}],"holder":{"reference":"#7601001261853"}}},{"fullUrl":"http://fhir.epl.bag.admin.ch/Ingredient/a5edbabc-f9d6-4019-ac6f-2a80fe033339","resource":{"resourceType":"Ingredient","id":"a5edbabc-f9d6-4019-ac6f-2a80fe033339","meta":{"profile":["http://fhir.ch/ig/ch-epl/StructureDefinition/ch-idmp-ingredient"]},"text":{"status":"generated","div":"<div xmlns=\"http://www.w3.org/1999/xhtml\">Ramucirumabum 100 mg</div>"},"status":"draft","for":[{"reference":"CHIDMPMedicinalProductDefinition/de872be1-02ff-4b8e-8691-658099182eb7"}],"role":{"coding":[{"system":"http://fhir.ch/ig/ch-epl/CodeSystem/ch-SMC-ingredient-role","code":"756005051001","display":"Active"}]},"substance":{"code":{"concept":{"text":"Ramucirumabum"}},"strength":[{"presentationQuantity":{"value":100,"unit":"mg"}}]}}},{"fullUrl":"http://fhir.epl.bag.admin.ch/ClinicalUseDefinition/CYRAMZA.01","resource":{"resourceType":"ClinicalUseDefinition","id":"CYRAMZA.01","text":{"status":"generated","div":"<div xmlns=\"http://www.w3.org/1999/xhtml\">In Kombination mit Paclitaxel für die Behandlung von erwachsenen Patienten mit ECOG-Status 0 oder 1 mit fortgeschrittenem Adenokarzinom des Magens oder gastroösophagealen Übergangs mit einem Progress nach vorausgegangener Platin- und Fluoropyrimidin-haltiger Chemotherapie.\nAls Monotherapie für die Behandlung von erwachsenen Patienten mit ECOG-Status 0 oder 1 mit fortgeschrittenem Adenokarzinom des Magens oder des gastroösophagealen Übergangs mit einem Progress nach vorausgegangener Platin- oder Fluoropyrimidin-haltiger Chemotherapie, wenn diese Patienten für eine Kombinationstherapie mit Paclitaxel nicht geeignet sind.\nDie Behandlung bedarf der Kostengutsprache durch den Krankenversicherer nach vorgängiger Konsultation des Vertrauensarztes.\nFolgender Indikationscode ist an den Krankenversicherer zu übermitteln: 20403.01</div>"},"type":"indication","indication":{"diseaseSymptomProcedure":{"concept":{"text":"In Kombination mit Paclitaxel für die Behandlung von erwachsenen Patienten mit ECOG-Status 0 oder 1 mit fortgeschrittenem Adenokarzinom des Magens oder gastroösophagealen Übergangs mit einem Progress nach vorausgegangener Platin- und Fluoropyrimidin-haltiger Chemotherapie.\nAls Monotherapie für die Behandlung von erwachsenen Patienten mit ECOG-Status 0 oder 1 mit fortgeschrittenem Adenokarzinom des Magens oder des gastroösophagealen Übergangs mit einem Progress nach vorausgegangener Platin- oder Fluoropyrimidin-haltiger Chemotherapie, wenn diese Patienten für eine Kombinationstherapie mit Paclitaxel nicht geeignet sind.\nDie Behandlung bedarf der Kostengutsprache durch den Krankenversicherer nach vorgängiger Konsultation des Vertrauensarztes.\nFolgender Indikationscode ist an den Krankenversicherer zu übermitteln: 20403.01"}}}}},{"fullUrl":"http://fhir.epl.bag.admin.ch/ClinicalUseDefinition/CYRAMZA.02","resource":{"resourceType":"ClinicalUseDefinition","id":"CYRAMZA.02","text":{"status":"generated","div":"<div xmlns=\"http://www.w3.org/1999/xhtml\">In Kombination mit FOLFIRI (Irinotecan, Folsäure und 5-Fluorouracil) zur Behandlung von erwachsenen Patienten mit metastasiertem kolorektalem Karzinom (mKRK) mit Progress während oder nach vorausgegangener Therapie mit Bevacizumab, Oxaliplatin und einem Fluoropyrimidin. Die Behandlung bedarf der Kostengutsprache durch den Krankenversicherer nach vorgängiger Konsultation des Vertrauensarztes.\nDie Eli Lilly (Suisse) SA vergütet dem Krankenversicherer, bei dem die versicherte Person zum Zeitpunkt des Bezugs versichert war, auf dessen erste Aufforderung hin für auf jede bezogene Packung CYRAMZA einen festgelegten Anteil des Fabrikabgabepreises zurück. Sie gibt dem Krankenversicherer die Höhe der Rückvergütung bekannt. Die Mehrwertsteuer kann nicht zusätzlich zu diesem Anteil des Fabrikabgabepreises zurückgefordert werden. Die Aufforderung zur Rückvergütung soll ab dem Zeitpunkt der Verabreichung erfolgen.\nFolgender Indikationscode ist an den Krankenversicherer zu übermitteln: 20403.02</div>"},"type":"indication","indication":{"diseaseSymptomProcedure":{"concept":{"text":"In Kombination mit FOLFIRI (Irinotecan, Folsäure und 5-Fluorouracil) zur Behandlung von erwachsenen Patienten mit metastasiertem kolorektalem Karzinom (mKRK) mit Progress während oder nach vorausgegangener Therapie mit Bevacizumab, Oxaliplatin und einem Fluoropyrimidin. Die Behandlung bedarf der Kostengutsprache durch den Krankenversicherer nach vorgängiger Konsultation des Vertrauensarztes.\nDie Eli Lilly (Suisse) SA vergütet dem Krankenversicherer, bei dem die versicherte Person zum Zeitpunkt des Bezugs versichert war, auf dessen erste Aufforderung hin für auf jede bezogene Packung CYRAMZA einen festgelegten Anteil des Fabrikabgabepreises zurück. Sie gibt dem Krankenversicherer die Höhe der Rückvergütung bekannt. Die Mehrwertsteuer kann nicht zusätzlich zu diesem Anteil des Fabrikabgabepreises zurückgefordert werden. Die Aufforderung zur Rückvergütung soll ab dem Zeitpunkt der Verabreichung erfolgen.\nFolgender Indikationscode ist an den Krankenversicherer zu übermitteln: 20403.02"}}}}}]}
|
data/spec/fhir_spec.rb
ADDED
|
@@ -0,0 +1,53 @@
|
|
|
1
|
+
require "spec_helper"
|
|
2
|
+
require "oddb2xml/downloader"
|
|
3
|
+
require "oddb2xml/extractor"
|
|
4
|
+
require "oddb2xml/fhir_support"
|
|
5
|
+
|
|
6
|
+
describe "FHIR Indikationscode support" do
|
|
7
|
+
let(:cyramza_fixture) { File.join(Oddb2xml::SpecData, "fhir", "cyramza.ndjson") }
|
|
8
|
+
|
|
9
|
+
describe Oddb2xml::FHIR::ClinicalUseDefinition do
|
|
10
|
+
it "extracts the .NN suffix from id" do
|
|
11
|
+
cud = described_class.new("id" => "CYRAMZA.02", "type" => "indication")
|
|
12
|
+
expect(cud.nn_suffix).to eq("02")
|
|
13
|
+
expect(cud.indication?).to be true
|
|
14
|
+
end
|
|
15
|
+
|
|
16
|
+
it "returns nil suffix for non-conforming ids" do
|
|
17
|
+
cud = described_class.new("id" => "CYRAMZA")
|
|
18
|
+
expect(cud.nn_suffix).to be_nil
|
|
19
|
+
end
|
|
20
|
+
end
|
|
21
|
+
|
|
22
|
+
describe Oddb2xml::FHIR::Bundle do
|
|
23
|
+
it "collects ClinicalUseDefinition entries" do
|
|
24
|
+
line = File.read(cyramza_fixture).lines.first
|
|
25
|
+
bundle = described_class.new(line)
|
|
26
|
+
expect(bundle.clinical_use_definitions).not_to be_empty
|
|
27
|
+
expect(bundle.clinical_use_definitions.map(&:id)).to include("CYRAMZA.01", "CYRAMZA.02")
|
|
28
|
+
end
|
|
29
|
+
end
|
|
30
|
+
|
|
31
|
+
describe Oddb2xml::FHIR::PreparationsParser do
|
|
32
|
+
it "constructs XXXXX.NN indication codes from FOPHDossierNumber + CUD suffix" do
|
|
33
|
+
parser = described_class.new(cyramza_fixture)
|
|
34
|
+
prep = parser.preparations.first
|
|
35
|
+
codes = prep.IndicationCodes.map(&:code)
|
|
36
|
+
expect(codes).to include("20403.01", "20403.02")
|
|
37
|
+
end
|
|
38
|
+
end
|
|
39
|
+
|
|
40
|
+
describe Oddb2xml::FhirExtractor do
|
|
41
|
+
it "exposes indication_codes on each item and package" do
|
|
42
|
+
data = described_class.new(cyramza_fixture).to_hash
|
|
43
|
+
expect(data).not_to be_empty
|
|
44
|
+
|
|
45
|
+
item = data.values.first
|
|
46
|
+
codes = item[:indication_codes].map { |ic| ic[:code] }
|
|
47
|
+
expect(codes).to include("20403.01", "20403.02")
|
|
48
|
+
|
|
49
|
+
pkg = item[:packages].values.first
|
|
50
|
+
expect(pkg[:indication_codes]).to eq(item[:indication_codes])
|
|
51
|
+
end
|
|
52
|
+
end
|
|
53
|
+
end
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: oddb2xml
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 3.0.
|
|
4
|
+
version: 3.0.6
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Yasuhiro Asaka, Zeno R.R. Davatz, Niklaus Giger
|
|
@@ -261,6 +261,20 @@ dependencies:
|
|
|
261
261
|
- - ">="
|
|
262
262
|
- !ruby/object:Gem::Version
|
|
263
263
|
version: 3.3.9
|
|
264
|
+
- !ruby/object:Gem::Dependency
|
|
265
|
+
name: csv
|
|
266
|
+
requirement: !ruby/object:Gem::Requirement
|
|
267
|
+
requirements:
|
|
268
|
+
- - ">="
|
|
269
|
+
- !ruby/object:Gem::Version
|
|
270
|
+
version: '0'
|
|
271
|
+
type: :runtime
|
|
272
|
+
prerelease: false
|
|
273
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
274
|
+
requirements:
|
|
275
|
+
- - ">="
|
|
276
|
+
- !ruby/object:Gem::Version
|
|
277
|
+
version: '0'
|
|
264
278
|
- !ruby/object:Gem::Dependency
|
|
265
279
|
name: standardrb
|
|
266
280
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -512,6 +526,7 @@ files:
|
|
|
512
526
|
- spec/data/compressor/oddb2xml_files_lppv.txt
|
|
513
527
|
- spec/data/compressor/oddb2xml_files_nonpharma.xls
|
|
514
528
|
- spec/data/epha_interactions.csv
|
|
529
|
+
- spec/data/fhir/cyramza.ndjson
|
|
515
530
|
- spec/data/listen_neu.html
|
|
516
531
|
- spec/data/medregbm_betrieb.txt
|
|
517
532
|
- spec/data/medregbm_person.txt
|
|
@@ -539,6 +554,7 @@ files:
|
|
|
539
554
|
- spec/data_helper.rb
|
|
540
555
|
- spec/downloader_spec.rb
|
|
541
556
|
- spec/extractor_spec.rb
|
|
557
|
+
- spec/fhir_spec.rb
|
|
542
558
|
- spec/fixtures/vcr_cassettes/artikelstamm.json
|
|
543
559
|
- spec/fixtures/vcr_cassettes/oddb2xml.json
|
|
544
560
|
- spec/galenic_spec.rb
|
|
@@ -607,6 +623,7 @@ test_files:
|
|
|
607
623
|
- spec/data/compressor/oddb2xml_files_lppv.txt
|
|
608
624
|
- spec/data/compressor/oddb2xml_files_nonpharma.xls
|
|
609
625
|
- spec/data/epha_interactions.csv
|
|
626
|
+
- spec/data/fhir/cyramza.ndjson
|
|
610
627
|
- spec/data/listen_neu.html
|
|
611
628
|
- spec/data/medregbm_betrieb.txt
|
|
612
629
|
- spec/data/medregbm_person.txt
|
|
@@ -634,6 +651,7 @@ test_files:
|
|
|
634
651
|
- spec/data_helper.rb
|
|
635
652
|
- spec/downloader_spec.rb
|
|
636
653
|
- spec/extractor_spec.rb
|
|
654
|
+
- spec/fhir_spec.rb
|
|
637
655
|
- spec/fixtures/vcr_cassettes/artikelstamm.json
|
|
638
656
|
- spec/fixtures/vcr_cassettes/oddb2xml.json
|
|
639
657
|
- spec/galenic_spec.rb
|