oddb2xml 2.5.0 → 2.5.1
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- checksums.yaml +4 -4
- data/.travis.yml +1 -1
- data/Elexis_Artikelstamm_v003.xsd +387 -0
- data/Elexis_Artikelstamm_v5.xsd +513 -0
- data/Gemfile +2 -6
- data/History.txt +11 -0
- data/README.md +35 -27
- data/artikelstamm.md +68 -0
- data/bin/compare_v5 +41 -0
- data/bin/oddb2xml +3 -15
- data/data/article_overrides.yaml +51859 -0
- data/data/gtin2ignore.yaml +30510 -0
- data/data/product_overrides.yaml +4 -0
- data/lib/oddb2xml/builder.rb +543 -192
- data/lib/oddb2xml/cli.rb +82 -62
- data/lib/oddb2xml/compare.rb +189 -0
- data/lib/oddb2xml/compressor.rb +6 -3
- data/lib/oddb2xml/downloader.rb +79 -64
- data/lib/oddb2xml/extractor.rb +67 -40
- data/lib/oddb2xml/options.rb +76 -77
- data/lib/oddb2xml/parslet_compositions.rb +18 -1
- data/lib/oddb2xml/util.rb +25 -3
- data/lib/oddb2xml/version.rb +1 -1
- data/oddb2xml.gemspec +8 -5
- data/oddb2xml.xsd +1 -0
- data/spec/artikelstamm_spec.rb +383 -0
- data/spec/builder_spec.rb +147 -118
- data/spec/calc_spec.rb +3 -15
- data/spec/cli_spec.rb +24 -35
- data/spec/compare_spec.rb +24 -0
- data/spec/compressor_spec.rb +1 -3
- data/spec/data/Elexis_Artikelstamm_v5.xsd +513 -0
- data/spec/data/Preparations.xml +2200 -0
- data/spec/data/Publications.xls +0 -0
- data/spec/data/artikelstamm_N_010917.xml +39 -0
- data/spec/data/artikelstamm_N_011217.xml +17 -0
- data/spec/data/artikelstamm_P_010917.xml +86 -0
- data/spec/data/artikelstamm_P_011217.xml +63 -0
- data/spec/data/oddb2xml_files_lppv.txt +2 -0
- data/spec/data/refdata_NonPharma.xml +38 -0
- data/spec/data/refdata_Pharma.xml +220 -0
- data/spec/data/swissmedic_orphan.xlsx +0 -0
- data/spec/data/swissmedic_package.xlsx +0 -0
- data/spec/data/transfer.dat +59 -19
- data/spec/data/v5_first.xml +102 -0
- data/spec/data/v5_second.xml +184 -0
- data/spec/data_helper.rb +72 -0
- data/spec/downloader_spec.rb +19 -27
- data/spec/extractor_spec.rb +27 -33
- data/spec/fixtures/vcr_cassettes/artikelstamm.json +1 -0
- data/spec/options_spec.rb +73 -66
- data/spec/spec_helper.rb +73 -24
- data/test_options.rb +4 -2
- metadata +100 -21
- data/spec/data/XMLPublications.zip +0 -0
- data/spec/data/compressor/oddb_article.xml +0 -0
- data/spec/data/compressor/oddb_fi.xml +0 -0
- data/spec/data/compressor/oddb_fi_product.xml +0 -0
- data/spec/data/compressor/oddb_limitation.xml +0 -0
- data/spec/data/compressor/oddb_product.xml +0 -0
- data/spec/data/compressor/oddb_substance.xml +0 -0
data/spec/spec_helper.rb
CHANGED
@@ -8,11 +8,9 @@
|
|
8
8
|
$:.unshift File.join(File.dirname(__FILE__), '..', 'lib')
|
9
9
|
$:.unshift File.dirname(__FILE__)
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10
10
|
|
11
|
-
require 'bundler/setup'
|
12
|
-
Bundler.require
|
13
|
-
|
14
11
|
require 'rspec'
|
15
12
|
require 'webmock/rspec'
|
13
|
+
require 'flexmock/rspec'
|
16
14
|
require 'pp'
|
17
15
|
|
18
16
|
begin # load pry if is available
|
@@ -47,8 +45,8 @@ module Oddb2xml
|
|
47
45
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'7680532900196', # Insulin, gentechnik
|
48
46
|
'7680555610041', # Diaphin 10 g i.v. drug
|
49
47
|
]
|
50
|
-
FRIDGE_GTIN = '
|
51
|
-
ORPHAN_GTIN = '
|
48
|
+
FRIDGE_GTIN = '7680002770014' # fridge drug 7680002770014 Coeur-Vaisseaux Sérocytol, suppositoire
|
49
|
+
ORPHAN_GTIN = '7680587340015' # orphan drug IKSNR 62132: Adcetris, Pulver zur Herstellung einer Infusionslösung
|
52
50
|
GTINS_DRUGS = [ '733905577161', # 1-DAY ACUVUE Moist Tag -2.00dpt BC 8.5
|
53
51
|
FRIDGE_GTIN,
|
54
52
|
ORPHAN_GTIN,
|
@@ -72,44 +70,47 @@ module Oddb2xml
|
|
72
70
|
'7680555580054', # ZYVOXID
|
73
71
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'7680620690084', # LEVETIRACETAM DESITIN Mini Filmtab 250 mg needed for extractor_spec.rb
|
74
72
|
] + GTINS_CALC
|
75
|
-
FERRO_GRADUMET_GTIN = 7680316440115
|
76
|
-
|
77
|
-
|
78
|
-
LANSOYL_GTIN = 7680324750190
|
73
|
+
FERRO_GRADUMET_GTIN = '7680316440115'
|
74
|
+
HIRUDOID_GTIN = '7680161050583'
|
75
|
+
LANSOYL_GTIN = '7680324750190'
|
79
76
|
LANSOYL_PRICE_RESELLER_PUB = 18.95
|
80
77
|
LANSOYL_PRICE_ZURROSE = 10.54
|
81
78
|
LANSOYL_PRICE_ZURROSEPUB = 16.25
|
82
|
-
LEVETIRACETAM_GTIN = 7680620690084
|
79
|
+
LEVETIRACETAM_GTIN = '7680620690084'
|
83
80
|
LEVETIRACETAM_PRICE_PPUB = 27.8
|
84
81
|
LEVETIRACETAM_PRICE_ZURROSE = 13.49
|
85
82
|
LEVETIRACETAM_PRICE_RESELLER_PUB = 24.3
|
86
|
-
SOFRADEX_GTIN = 7680316950157
|
83
|
+
SOFRADEX_GTIN = '7680316950157'
|
87
84
|
SOFRADEX_PRICE_RESELLER_PUB = 12.9
|
88
85
|
SOFRADEX_PRICE_ZURROSE = 7.18
|
89
86
|
SOFRADEX_PRICE_ZURROSEPUB = 15.45
|
90
|
-
THREE_TC_GTIN = 7680536620137
|
91
|
-
ZYVOXID_GTIN = 7680555580054
|
87
|
+
THREE_TC_GTIN = '7680536620137'
|
88
|
+
ZYVOXID_GTIN = '7680555580054'
|
92
89
|
|
93
90
|
GTINS_MEDREG = [
|
94
|
-
7601001380028, # Glarus
|
95
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-
7601002017145, # Kantonsspital Glarus AG
|
96
|
-
7601001395145, # Kantonstierärztlicher Dienst
|
97
|
-
7601001396043, # St. Fridolin Pharma AG
|
98
|
-
7601000159199, # Davatz Ursula
|
99
|
-
7601000159199, # Davatz Ursula
|
100
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-
7601000254344, # Pfister Daniel 8753 Mollis
|
101
|
-
7601000254207, # Züst Peter 8753 Mollis
|
102
|
-
7601000752314, # Züst Yvonne 8753 Mollis
|
91
|
+
'7601001380028', # Glarus
|
92
|
+
'7601002017145', # Kantonsspital Glarus AG
|
93
|
+
'7601001395145', # Kantonstierärztlicher Dienst
|
94
|
+
'7601001396043', # St. Fridolin Pharma AG
|
95
|
+
'7601000159199', # Davatz Ursula
|
96
|
+
'7601000159199', # Davatz Ursula
|
97
|
+
'7601000254344', # Pfister Daniel 8753 Mollis
|
98
|
+
'7601000254207', # Züst Peter 8753 Mollis
|
99
|
+
'7601000752314', # Züst Yvonne 8753 Mollis
|
103
100
|
]
|
104
101
|
|
105
102
|
end
|
106
103
|
|
104
|
+
RSpec.configure do |config|
|
105
|
+
config.mock_with :flexmock
|
106
|
+
end
|
107
|
+
|
107
108
|
VCR.configure do |config|
|
108
109
|
config.cassette_library_dir = "spec/fixtures/vcr_cassettes"
|
109
110
|
config.hook_into :webmock
|
110
111
|
config.debug_logger = File.open(File.join(File.dirname(File.dirname(__FILE__)), 'vcr.log'), 'w+')
|
111
112
|
config.debug_logger.sync = true
|
112
|
-
config.default_cassette_options = { :record
|
113
|
+
config.default_cassette_options = { :record =>:once, # ARGV.join(' ').index('downloader_spec') ? :new_episodes : :once ,
|
113
114
|
:preserve_exact_body_bytes => true,
|
114
115
|
:allow_playback_repeats => true,
|
115
116
|
:serialize_with => :json,
|
@@ -133,6 +134,7 @@ require 'oddb2xml'
|
|
133
134
|
|
134
135
|
module Kernel
|
135
136
|
def buildr_capture(stream)
|
137
|
+
Pry.config.output = STDOUT
|
136
138
|
begin
|
137
139
|
stream = stream.to_s
|
138
140
|
eval "$#{stream} = StringIO.new"
|
@@ -161,8 +163,9 @@ module ServerMockHelper
|
|
161
163
|
dirs.each{ |dir| FileUtils.rm_rf(Dir.glob(File.join(dir, '*')), :verbose => false) }
|
162
164
|
dirs.each{ |dir| FileUtils.makedirs(dir, :verbose => false) }
|
163
165
|
cleanup_compressor
|
166
|
+
mock_downloads
|
164
167
|
end
|
165
|
-
|
168
|
+
|
166
169
|
def setup_server_mocks
|
167
170
|
puts "Skip setup_server_mocks as we want to use vcr"
|
168
171
|
end
|
@@ -218,3 +221,49 @@ RSpec.configure do |config|
|
|
218
221
|
# Helper
|
219
222
|
config.include(ServerMockHelper)
|
220
223
|
end
|
224
|
+
|
225
|
+
def validate_via_xsd(xsd_file, xml_file)
|
226
|
+
xsd =open(xsd_file).read
|
227
|
+
xsd_rtikelstamm_xml = Nokogiri::XML::Schema(xsd)
|
228
|
+
doc = Nokogiri::XML(File.read(xml_file))
|
229
|
+
xsd_rtikelstamm_xml.validate(doc).each do
|
230
|
+
|error|
|
231
|
+
if error.message
|
232
|
+
puts "Failed validating #{xml_file} with #{File.size(xml_file)} bytes using XSD from #{xsd_file}"
|
233
|
+
puts "CMD: xmllint --noout --schema #{xsd_file} #{xml_file}"
|
234
|
+
end
|
235
|
+
msg = "expected #{error.message} to be nil\nfor #{xml_file}"
|
236
|
+
puts msg
|
237
|
+
expect(error.message).to be_nil, msg
|
238
|
+
end
|
239
|
+
end
|
240
|
+
|
241
|
+
def mock_downloads
|
242
|
+
WebMock.enable!
|
243
|
+
{ 'transfer.zip' => ['transfer.dat'],
|
244
|
+
'XMLPublications.zip' => ['Preparations.xml', 'ItCodes.xml', 'GL_Diff_SB.xml']
|
245
|
+
}.each do |zip, entries|
|
246
|
+
zip_file = File.join(Oddb2xml::SpecData,zip)
|
247
|
+
files = entries.collect{|entry| File.join(Oddb2xml::SpecData, entry)}
|
248
|
+
FileUtils.rm(zip_file, :verbose => false) if File.exist?(zip_file)
|
249
|
+
cmd = "zip --quiet --junk-paths #{zip_file} #{files.join(' ')}"
|
250
|
+
system(cmd)
|
251
|
+
end
|
252
|
+
{ 'https://download.epha.ch/cleaned/matrix.csv' => 'epha_interactions.csv',
|
253
|
+
'https://www.swissmedic.ch/dam/swissmedic/de/dokumente/listen/humanarzneimittel.orphan.xlsx.download.xlsx/humanarzneimittel.xlsx' => 'swissmedic_orphan.xlsx',
|
254
|
+
'https://www.swissmedic.ch/dam/swissmedic/de/dokumente/listen/excel-version_zugelasseneverpackungen.xlsx.download.xlsx/excel-version_zugelasseneverpackungen.xlsx' => 'swissmedic_package.xlsx',
|
255
|
+
'http://pillbox.oddb.org/TRANSFER.ZIP' => 'transfer.zip',
|
256
|
+
'https://raw.githubusercontent.com/epha/robot/master/data/manual/swissmedic/atc.csv' => 'atc.csv',
|
257
|
+
'https://raw.githubusercontent.com/zdavatz/oddb2xml_files/master/LPPV.txt' => 'oddb2xml_files_lppv.txt',
|
258
|
+
'http://bag.e-mediat.net/SL2007.Web.External/File.axd?file=XMLPublications.zip' => 'XMLPublications.zip',
|
259
|
+
# 'http://refdatabase.refdata.ch/Service/Article.asmx?WSDL' => 'refdata_Pharma.xml',
|
260
|
+
}.each do |url, file|
|
261
|
+
inhalt = File.read(File.join(Oddb2xml::SpecData, file))
|
262
|
+
m = flexmock('open-uri')
|
263
|
+
m.should_receive(:open).with(url).and_return(inhalt)
|
264
|
+
stub_request(:any,url).to_return(body: inhalt)
|
265
|
+
stub_request(:get,url).to_return(body: inhalt)
|
266
|
+
stub_request(:open,url).to_return(body: inhalt)
|
267
|
+
end
|
268
|
+
VCR.eject_cassette; VCR.insert_cassette('oddb2xml')
|
269
|
+
end
|
data/test_options.rb
CHANGED
@@ -8,6 +8,7 @@
|
|
8
8
|
|
9
9
|
require 'fileutils'
|
10
10
|
require 'socket'
|
11
|
+
require 'oddb2xml/version'
|
11
12
|
|
12
13
|
def test_one_call(cmd)
|
13
14
|
dest = File.join(Ausgabe, cmd.gsub(/[ -]/, '_'))
|
@@ -46,7 +47,7 @@ def prepare_for_gem_test
|
|
46
47
|
}
|
47
48
|
end
|
48
49
|
|
49
|
-
Ausgabe = File.join(Dir.pwd, 'ausgabe', Time.now.strftime('%Y.%m.%d
|
50
|
+
Ausgabe = File.join(Dir.pwd, 'ausgabe', "#{Oddb2xml::VERSION}-#{Time.now.strftime('%Y.%m.%d')}")
|
50
51
|
puts "FQDN hostname #{Socket.gethostbyname(Socket.gethostname).inspect}"
|
51
52
|
FileUtils.makedirs(Ausgabe)
|
52
53
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prepare_for_gem_test
|
@@ -54,6 +55,7 @@ prepare_for_gem_test
|
|
54
55
|
# unfortunately it returns a very common name
|
55
56
|
unless 'localhost.localdomain'.eql?(Socket.gethostbyname(Socket.gethostname).first)
|
56
57
|
test_one_call('oddb2xml -e')
|
58
|
+
test_one_call('oddb2xml --artikelstamm')
|
57
59
|
test_one_call('oddb2xml -e -I80')
|
58
60
|
test_one_call('oddb2xml -f dat --append -I 80')
|
59
61
|
test_one_call('oddb2xml -f dat --append')
|
@@ -65,4 +67,4 @@ test_one_call('oddb2xml -o')
|
|
65
67
|
test_one_call('oddb2xml -f xml')
|
66
68
|
test_one_call('oddb2xml -f dat')
|
67
69
|
test_one_call('oddb2xml -t md')
|
68
|
-
test_one_call('oddb2xml -x address')
|
70
|
+
# test_one_call('oddb2xml -x address')
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: oddb2xml
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 2.5.
|
4
|
+
version: 2.5.1
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Yasuhiro Asaka, Zeno R.R. Davatz, Niklaus Giger
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2018-02-
|
11
|
+
date: 2018-02-09 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rubyzip
|
@@ -25,7 +25,7 @@ dependencies:
|
|
25
25
|
- !ruby/object:Gem::Version
|
26
26
|
version: '0'
|
27
27
|
- !ruby/object:Gem::Dependency
|
28
|
-
name:
|
28
|
+
name: minitar
|
29
29
|
requirement: !ruby/object:Gem::Requirement
|
30
30
|
requirements:
|
31
31
|
- - ">="
|
@@ -58,14 +58,14 @@ dependencies:
|
|
58
58
|
requirements:
|
59
59
|
- - ">="
|
60
60
|
- !ruby/object:Gem::Version
|
61
|
-
version:
|
61
|
+
version: 1.8.2
|
62
62
|
type: :runtime
|
63
63
|
prerelease: false
|
64
64
|
version_requirements: !ruby/object:Gem::Requirement
|
65
65
|
requirements:
|
66
66
|
- - ">="
|
67
67
|
- !ruby/object:Gem::Version
|
68
|
-
version:
|
68
|
+
version: 1.8.2
|
69
69
|
- !ruby/object:Gem::Dependency
|
70
70
|
name: savon
|
71
71
|
requirement: !ruby/object:Gem::Requirement
|
@@ -164,20 +164,62 @@ dependencies:
|
|
164
164
|
- - ">="
|
165
165
|
- !ruby/object:Gem::Version
|
166
166
|
version: '0'
|
167
|
+
- !ruby/object:Gem::Dependency
|
168
|
+
name: rack
|
169
|
+
requirement: !ruby/object:Gem::Requirement
|
170
|
+
requirements:
|
171
|
+
- - "<"
|
172
|
+
- !ruby/object:Gem::Version
|
173
|
+
version: '2.0'
|
174
|
+
type: :runtime
|
175
|
+
prerelease: false
|
176
|
+
version_requirements: !ruby/object:Gem::Requirement
|
177
|
+
requirements:
|
178
|
+
- - "<"
|
179
|
+
- !ruby/object:Gem::Version
|
180
|
+
version: '2.0'
|
167
181
|
- !ruby/object:Gem::Dependency
|
168
182
|
name: httpi
|
169
183
|
requirement: !ruby/object:Gem::Requirement
|
170
184
|
requirements:
|
171
185
|
- - ">="
|
172
186
|
- !ruby/object:Gem::Version
|
173
|
-
version:
|
187
|
+
version: '0'
|
188
|
+
type: :runtime
|
189
|
+
prerelease: false
|
190
|
+
version_requirements: !ruby/object:Gem::Requirement
|
191
|
+
requirements:
|
192
|
+
- - ">="
|
193
|
+
- !ruby/object:Gem::Version
|
194
|
+
version: '0'
|
195
|
+
- !ruby/object:Gem::Dependency
|
196
|
+
name: trollop
|
197
|
+
requirement: !ruby/object:Gem::Requirement
|
198
|
+
requirements:
|
199
|
+
- - ">="
|
200
|
+
- !ruby/object:Gem::Version
|
201
|
+
version: '0'
|
202
|
+
type: :runtime
|
203
|
+
prerelease: false
|
204
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+
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description: oddb2xml creates xml files using swissINDEX, BAG-XML and Swissmedic.
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email: yasaka@ywesee.com, zdavatz@ywesee.com, ngiger@ywesee.com
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
@@ -423,6 +496,8 @@ test_files:
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
@@ -431,12 +506,16 @@ test_files:
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
439
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|
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|
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|
+
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|
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|
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|
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|
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|
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|
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|