oddb2xml 2.3.0 → 2.3.1

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 1ab40ef8c4f53f94608a1e9fc3b0b7a374ef5792
-  data.tar.gz: 6d9f87677f27a84001f543383a39a1eff8d67590
+  metadata.gz: 3049b7997045bc7986340211b3611456ac10e68f
+  data.tar.gz: 11ade3b7d58f6b6de89f06ef51feaae35e69d2bb
 SHA512:
-  metadata.gz: 626a02b6dab71eda2290cd3dc8197f622e5cd6ad1884e113b4f4aa0bb252f3e480bc20b9cb9be6dd202b7dff0313aaf7e68171e359c91279572b531dd31b36ce
-  data.tar.gz: 0239307754df9f22d634e814da89bfe8430c6aa14b33774c0cbeaa61f2f09e2469b2999cf8e19e3722f39ec8ab3e40fad8ee0e8ca0534d8492cc6ce19a3db000
+  metadata.gz: e788309b1dc86015dabdf1a0f1ed6b3afd4322d38171c4ac9074657af65f73c2695ee0cd8e95b1aaaf3725e0095bc84df1d68d9eecad1842225c8bad79da679b
+  data.tar.gz: 901264169a14365065320c630886d631edad15adb8334708ad69073c01b599b470f85a1f849cef44dd6dbad23ceb710a03215f3809976d74e8c9558141e0ade6

data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    oddb2xml (2.3.0)
+    oddb2xml (2.3.1)
       archive-tar-minitar
       httpi (>= 2.4.1)
       mechanize
@@ -105,8 +105,8 @@ GEM
       wasabi (~> 3.4)
     sax-machine (1.3.2)
     slop (3.6.0)
-    spreadsheet (1.1.1)
-      ruby-ole (~> 1.0)
+    spreadsheet (1.1.0)
+      ruby-ole (>= 1.0)
     timecop (0.8.0)
     unf (0.1.4)
       unf_ext
@@ -138,4 +138,4 @@ DEPENDENCIES
   webmock
 
 BUNDLED WITH
-   1.10.6
+   1.11.2

data/History.txt

@@ -1,3 +1,9 @@
+=== 2.3.1 /15.12.2015
+
+* Deactivate (Pseudo-)Migel. Updated corresponding tests
+* Don't emit PEXF for drugs not listed with a GTIN in BAG Preparations.xml
+* revert Gemfile.lock to use spreadsheet.1.1.0, as 1.1.1 is not yet released
+
 === 2.3.0 /15.12.2015
 
 * emit correct NBR_RECORD in oddb*.xml

data/lib/oddb2xml/builder.rb

@@ -89,7 +89,7 @@ module Oddb2xml
           if migel = @migel[ean13]
             # delete duplicates
             @migel[ean13] = nil
-          end
+          end unless SkipMigelDownloader
           if seq = @items[obj[:ean]]
             obj[:seq] = seq
           end
@@ -110,9 +110,9 @@ module Oddb2xml
             :company_ean     => migel[:company_ean],
             :company_name    => migel[:company_name],
             :migel           => true,
-          }
+            }
           @articles << entry
-        end
+        end unless SkipMigelDownloader
         nrAdded = 0
         if @options[:extended]
           Oddb2xml.log("prepare_articles extended prepare_local_index having already #{@articles.size} articles")

data/lib/oddb2xml/cli.rb

@@ -213,7 +213,7 @@ module Oddb2xml
             Oddb2xml.log("MigelExtractor added #{@migel.size} migel items")
             @migel
           end
-        end
+        end unless SkipMigelDownloader
       when :package
         begin # instead of Thread.new do
           downloader = SwissmedicDownloader.new(:package, @options)
@@ -336,9 +336,13 @@ module Oddb2xml
           if @refdata_types[type]
             indices = @refdata_types[type].values.flatten.length
             if type == :nonpharma
-              migel_xls  = @migel.values.compact.select{|m| !m[:pharmacode]}.map{|m| m[:pharmacode] }
               nonpharmas = @refdata_types[type].keys
-              indices += (migel_xls - nonpharmas).length # ignore duplicates, null
+              if SkipMigelDownloader
+                indices + nonpharmas.length
+              else
+                migel_xls  = @migel.values.compact.select{|m| !m[:pharmacode]}.map{|m| m[:pharmacode] }
+                indices += (migel_xls - nonpharmas).length # ignore duplicates, null
+              end
               lines << sprintf("\tNonPharma products: %i", indices)
             else
               lines << sprintf("\tPharma products: %i", indices)

data/lib/oddb2xml/downloader.rb

@@ -6,6 +6,8 @@ require 'mechanize'
 require 'zip'
 require 'savon'
 
+SkipMigelDownloader = true  # https://github.com/zdavatz/oddb2xml_files/raw/master/NON-Pharma.xls
+
 module Oddb2xml
   module DownloadMethod
     private
@@ -125,7 +127,7 @@ module Oddb2xml
       @url ||= 'https://github.com/zdavatz/oddb2xml_files/raw/master/NON-Pharma.xls'
       download_as('oddb2xml_files_nonpharma.xls', 'rb')
     end
-  end
+  end unless SkipMigelDownloader
   class EphaDownloader < Downloader
     include DownloadMethod
     def download

data/lib/oddb2xml/extractor.rb

@@ -1,5 +1,4 @@
 # encoding: utf-8
-
 require 'nokogiri'
 require 'spreadsheet'
 require 'stringio'
@@ -69,12 +68,11 @@ module Oddb2xml
         item[:pharmacodes] = []
         item[:packages]    = {} # pharmacode => package
         seq.Packs.Pack.each do |pac|
-          phar = pac.Pharmacode.to_i
+          unless pac.GTIN
+            puts "BagXmlExtractor: Skipping as missing GTIN in SwissmedicNo8 #{pac.SwissmedicNo8}  BagDossierNo #{pac.BagDossierNo} PackId #{pac.PackId}. Skipping"
+            next
+          end
           ean = pac.GTIN.to_i
-          # search_key = phar.to_i != 0 ? phar : ean
-          search_key = ean != 0 ? ean : phar
-          # as common key with RefData Pharma/NonPharma data
-          item[:pharmacodes] << phar
           # packages
           exf = {:price => '', :valid_date => '', :price_code => ''}
           if pac.Prices and pac.Prices.ExFactoryPrice
@@ -88,15 +86,14 @@ module Oddb2xml
             pub[:valid_date] =  pac.Prices.PublicPrice.ValidFromDate if pac.Prices.PublicPrice.ValidFromDate
             pub[:price_code] =  pac.Prices.PublicPrice.PriceTypeCode if pac.Prices.PublicPrice.PriceTypeCode
           end
-          item[:packages][search_key] = {
-            :pharmacode          => phar,
-            :ean                 => (ean) ? ean : '',
+          item[:packages][ean] = {
+            :ean                 => ean,
             :swissmedic_category => (cat = pac.SwissmedicCategory) ? cat : '',
             :swissmedic_number8  => (num = pac.SwissmedicNo8)      ? num.rjust(8, '0') : '',
             :prices              => { :exf_price => exf, :pub_price => pub },
           }
           # related all limitations
-          item[:packages][search_key][:limitations] = []
+          item[:packages][ean][:limitations] = []
           limitations = Hash.new{|h,k| h[k] = [] }
           if seq.Limitations
             limitations[:seq] = seq.Limitations.Limitation.collect { |x| x }
@@ -125,11 +122,7 @@ module Oddb2xml
               id  = item[key].to_s
             when :pac
               key = :swissmedic_number8
-              id  = item[:packages][search_key][key].to_s
-            end
-            if id.empty? or id == '0'
-              key = :pharmacode
-              id  = phar.to_i
+              id  = item[:packages][ean][key].to_s
             end
             lims.each do |lim|
               limitation = {
@@ -153,13 +146,13 @@ module Oddb2xml
                 end
               end
               limitation[:del] = deleted
-              item[:packages][search_key][:limitations] << limitation
+              item[:packages][ean][:limitations] << limitation
             end if lims
           end
           # limitation points
           pts = pac.PointLimitations.PointLimitation.first # only first points
-          item[:packages][search_key][:limitation_points] = pts ? pts.Points : ''
-          data[search_key] = item
+          item[:packages][ean][:limitation_points] = pts ? pts.Points : ''
+          data[ean] = item
         end
       end
       data
@@ -328,6 +321,7 @@ module Oddb2xml
       @sheet.each_with_index do |row, i|
         next if i.zero?
         phar = row[1].to_i
+        next if phar == 0
         ean = row[0].to_i
         ean = phar unless ean.to_s.length == 13
         data[ean] = {

data/lib/oddb2xml/version.rb

@@ -1,3 +1,3 @@
 module Oddb2xml
-  VERSION = "2.3.0"
+  VERSION = "2.3.1"
 end

data/lib/oddb2xml/xml_definitions.rb

@@ -69,7 +69,6 @@ end
 class PackContent
   include SAXMachine
   attribute :ProductKey
-  attribute :Pharmacode
   attribute :PackId
   element :DescriptionDe
   element :DescriptionFr

data/spec/builder_spec.rb

@@ -271,8 +271,8 @@ def check_article_IGM_format(line, price_kendural=825, add_80_percents=false)
   if /7680353660163\d$/.match(line) # KENDURAL Depottabl 30 Stk
     puts "found_SL for #{line}" if $VERBOSE
     found_SL = true
-    expect(line[60..65]).to eq '000491'
-    expect(price_exf).to eq 491
+    expect(line[60..65]).to eq '000495'
+    expect(price_exf).to eq 495
     expect(ckzl).to eq '1'
     expect(price_public).to eq price_kendural     # this is a SL-product. Therefore we may not have a price increase
     expect(line[66..71]).to eq '000'+price_kendural.to_s  # the dat format requires leading zeroes and not point
@@ -452,7 +452,7 @@ def checkProductXml(nbr_record = -1)
 end
 
 describe Oddb2xml::Builder do
-  NrExtendedArticles = 90
+  NrExtendedArticles = 34
   NrSubstances = 14
   NrLimitations = 5
   NrInteractions = 5
@@ -762,8 +762,10 @@ if RUN_ALL
       checkItemForRefdata(doc, "1699947", 1) # 3TC Filmtabl 150 mg SMNO 53662013 IKSNR 53‘662, 53‘663
       checkItemForRefdata(doc, "0598003", 0) # SOFRADEX Gtt Auric 8 ml
       checkItemForRefdata(doc, "5366964", 1) # 1-DAY ACUVUE moist jour
-      novopen = checkItemForRefdata(doc, "3036984", 1) # NovoPen 4 Injektionsgerät blue In NonPharma (a MiGel product)
-      expect(novopen.elements['ARTBAR/BC'].text).to eq '0'
+      unless SkipMigelDownloader
+        novopen = checkItemForRefdata(doc, "3036984", 1) # NovoPen 4 Injektionsgerät blue In NonPharma (a MiGel product)
+        expect(novopen.elements['ARTBAR/BC'].text).to eq '0'
+      end
     end
 
     it 'should generate SALECD A for migel (NINCD 13)' do
@@ -801,7 +803,7 @@ if RUN_ALL
       expect(dscrds.size).to eq(NrExtendedArticles)
       expect(XPath.match( doc, "//PHAR" ).find_all{|x| x.text.match('1699947') }.size).to eq(1) # swissmedic_packages Cardio-Pulmo-Rénal Sérocytol, suppositoire
       expect(XPath.match( doc, "//PHAR" ).find_all{|x| x.text.match('2465312') }.size).to eq(1) # from refdata_pharma.xml"
-      expect(XPath.match( doc, "//PHAR" ).find_all{|x| x.text.match('0000000') }.size).to eq(1) # from refdata_pharma.xml
+      expect(XPath.match( doc, "//PHAR" ).find_all{|x| x.text.match('0000000') }.size).to eq(0) # 0 is not a valid pharmacode
     end
 
     it 'should have a correct NBR_RECORD in oddb_limitation.xml' do
@@ -876,6 +878,13 @@ if RUN_ALL
       checkPrices(true)
     end
 
+    it 'should generate an article for EPIMINERAL' do
+      expect(File.exists?(oddb_article_xml)).to eq true
+      doc = REXML::Document.new IO.read(oddb_article_xml)
+      article = XPath.match( doc, "//ART[PHAR=5822801]").first
+      article.elements['DSCRD'].text.should match /EPIMINERAL/i
+    end
+
     it 'should generate a correct oddb_product.xml' do
       checkProductXml(NrProducts)
     end
@@ -932,7 +941,7 @@ if RUN_ALL
       expect(File.exists?(dat_filename)).to eq true
       oddb_dat = IO.read(dat_filename)
       oddb_dat_lines = IO.readlines(dat_filename)
-      IO.readlines(dat_filename).each{ |line| check_article_IGM_format(line, 883, true) }
+      IO.readlines(dat_filename).each{ |line| check_article_IGM_format(line, 891, true) }
     end
   end
 end

data/spec/calc_spec.rb

@@ -611,7 +611,7 @@ Die HILFSSTOFFE sind Aqua ad iniectabilia und Natrii chloridum.
 end
 
 describe Oddb2xml::Calc do
-  @@oddb_calc_xml = File.join(Oddb2xml::WorkDir, 'oddb_calc.xml')
+  Oddb_calc_xml = File.join(Oddb2xml::WorkDir, 'oddb_calc.xml')
 
   before(:all) do
     @savedDir = Dir.pwd
@@ -623,9 +623,9 @@ describe Oddb2xml::Calc do
     @options = Oddb2xml::Options.new
     @options.parser.parse!(@run_time_options.split(' '))
     @res = buildr_capture(:stdout){ Oddb2xml::Cli.new(@options.opts).run }
-    expect(File.exists?(@@oddb_calc_xml)).to eq true
-    @doc = REXML::Document.new File.read(@@oddb_calc_xml)
-    @nokogiri = Nokogiri::XML(File.read(@@oddb_calc_xml))
+    expect(File.exists?(Oddb_calc_xml)).to eq true
+    @doc = REXML::Document.new File.read(Oddb_calc_xml)
+    @nokogiri = Nokogiri::XML(File.read(Oddb_calc_xml))
   end
 
   after(:all) do
@@ -640,7 +640,7 @@ describe Oddb2xml::Calc do
       ['ARTICLES/ARTICLE', 'SHA256', /[a-f0-9]{32}/],
       ]
 
-    check_attributes(@@oddb_calc_xml, attribute_tests)
+    check_attributes(Oddb_calc_xml, attribute_tests)
 
     element_tests =    [
       ['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/EXCIPIENS', /.*pro Vitro.*/],
@@ -686,14 +686,14 @@ describe Oddb2xml::Calc do
       ['ARTICLES/ARTICLE/SELLING_UNITS', '60'],
       ['ARTICLES/ARTICLE/SELLING_UNITS', 'unbekannt'],
       ]
-    check_elements(@@oddb_calc_xml, element_tests)
+    check_elements(Oddb_calc_xml, element_tests)
   end
   context "when passing #{@run_time_options}" do
     it 'should contain the new fields as per July 2015' do
       #         xml.GEN_PRODUCTION    gen_production
       #          xml.INSULIN_CATEGORY  insulin_category
       #          xml.DRUG_INDEX        drug_index
-      expect(File.exists?(@@oddb_calc_xml)).to eq true
+      expect(File.exists?(Oddb_calc_xml)).to eq true
     end
 
     it 'should create a correct xml and a csv file' do

data/spec/data/Preparations.xml

@@ -309,7 +309,7 @@
     <CommentIt />
     <VatInEXF>N</VatInEXF>
     <Packs>
-      <Pack ProductKey="8620" Pharmacode="1699947" PackId="12442">
+      <Pack ProductKey="8620" PackId="12442">
         <DescriptionDe>60 Stk</DescriptionDe>
         <DescriptionFr>60 pce</DescriptionFr>
         <DescriptionIt>60 pce</DescriptionIt>

data/spec/data/zurrose_transfer.dat

@@ -1,3 +1,5 @@
+1125822801EPIMINERAL Paste 20 g                             0043200060004000000000000000000000001
+1125830700EPIMINERAL Wundgranulat 6 g                       0043200060004000000000000000000000001
 1122465312ZYVOXID Filmtabl 600 mg 10 Stk                    096114108275100A080190076805555800542
 1120020209ERYTRHOCIN I.V. Trockensub Fl 1g                  001518002010300B080160000000000000002
 1120020244FERRO-GRADUMET Depottabl 30 Stk                   000895001090300C060710076803164401152

data/spec/downloader_spec.rb

@@ -446,7 +446,7 @@ describe Oddb2xml::MigelDownloader do
       expect(File.exist?('oddb2xml_files_nonpharma.txt')).to eq(false)
     end
   end
-end
+end unless SkipMigelDownloader
 
 describe Oddb2xml::ZurroseDownloader do
   include ServerMockHelper
@@ -458,7 +458,7 @@ describe Oddb2xml::ZurroseDownloader do
           puts "#{Time.now}: #{__LINE__}: URI was #{i.request.uri}"
           lines = i.response.body.clone.split("\n")
           to_add = lines[0..5]
-          Oddb2xml::GTINS_DRUGS.each{ |ean| to_add << lines.find{ |x| x.index(ean.to_s) } }
+          Oddb2xml::GTINS_DRUGS.each{ |ean| to_add << lines.find{ |line| line.index(ean.to_s) || /EPIMINERAL/i.match(line) } }
           i.response.body = to_add.compact.join("\n")
           i.response.headers['Content-Length'] = i.response.body.size
         end

data/spec/extractor_spec.rb

@@ -44,9 +44,10 @@ describe Oddb2xml::MigelExtractor do
     expect(@items.find{|k,v| 3248410 == v[:pharmacode] }).not_to be_nil
     expect(@items.find{|k,v| /Novopen/i.match(v[:desc_de]) }).not_to be_nil
     expect(@items.find{|k,v| 3036984 == v[:pharmacode] }).not_to be_nil
-    expect(@items.find{|k,v| /Epimineral/i.match(v[:desc_de]) }).not_to be_nil
+    # Epimineral without pharmacode nor GTIN should not appear
+    expect(@items.find{|k,v| /Epimineral/i.match(v[:desc_de]) }).to be_nil
   end
-end
+end unless SkipMigelDownloader
 
 describe Oddb2xml::RefdataExtractor do
   before(:all) { common_before }
@@ -115,17 +116,16 @@ describe Oddb2xml::BagXmlExtractor do
       dat = File.read(File.join(Oddb2xml::SpecData, 'Preparations.xml'))
       Oddb2xml::BagXmlExtractor.new(dat).to_hash
     end
-    it "should handle pub_price for 1699947 correctly" do
+    it "should handle pub_price for 3TC correctly" do
       @items = subject.to_hash
       with_pharma = @items[Oddb2xml::THREE_TC_GTIN]
       expect(with_pharma).not_to be_nil
       expect(with_pharma[:name_de]).to eq '3TC'
       expect(with_pharma[:atc_code]).not_to be_nil
-      expect(with_pharma[:pharmacodes]).to eq [1699947]
       expect(with_pharma[:packages].size).to eq(1)
       expect(with_pharma[:packages].first[0]).to eq(Oddb2xml::THREE_TC_GTIN)
       expect(with_pharma[:packages].first[1][:prices][:pub_price][:price]).to eq('205.3')
-      expect(@items.size).to eq(5)
+      expect(@items.size).to eq(4)
     end
     it "should handle pub_price for 7680620690084 correctly" do
       @items = subject.to_hash
@@ -343,6 +343,12 @@ describe Oddb2xml::ZurroseExtractor do
       filename = File.expand_path(File.join(__FILE__, '..', 'data', 'zurrose_transfer.dat'))
       Oddb2xml::ZurroseExtractor.new(filename, true)
     end
+
+    it "should extract EPIMINERAL" do
+        ethacridin = subject.to_hash.values.find{ |x| /EPIMINERAL/i.match(x[:description])}
+        expect(ethacridin[:description]).to eq("EPIMINERAL Paste 20 g")
+    end
+
     it "should set the correct Ethacridin description" do
         ethacridin = subject.to_hash.values.find{ |x| /Ethacridin/i.match(x[:description])}
         expect(ethacridin[:description]).to eq("Ethacridin lactat 1‰ 100ml")

data/spec/fixtures/vcr_cassettes/oddb2xml.json

@@ -1173,80 +1173,6 @@
                 }
             }
         },
-        {
-            "recorded_at": "Tue, 24 Nov 2015 15:16:57 GMT",
-            "request": {
-                "body": {
-                    "base64_string": "",
-                    "encoding": "US-ASCII"
-                },
-                "headers": {
-                    "Accept": [
-                        "*/*"
-                    ],
-                    "Accept-Charset": [
-                        "ISO-8859-1,utf-8;q=0.7,*;q=0.7"
-                    ],
-                    "Accept-Encoding": [
-                        "gzip,deflate,identity"
-                    ],
-                    "Accept-Language": [
-                        "en-us,en;q=0.5"
-                    ],
-                    "Connection": [
-                        "keep-alive"
-                    ],
-                    "Host": [
-                        "zurrose.com"
-                    ],
-                    "Keep-Alive": [
-                        300
-                    ],
-                    "User-Agent": [
-                        "Mozilla/5.0 (X11; Linux x86_64; rv:16.0) Gecko/20100101 Firefox/16.0"
-                    ]
-                },
-                "method": "get",
-                "uri": "http://zurrose.com/fileadmin/main/lib/download.php?file=/fileadmin/user_upload/downloads/ProduktUpdate/IGM11_mit_MwSt/Vollstamm/transfer.dat"
-            },
-            "response": {
-                "body": {
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-                    "Content-Type": [
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-                    "Date": [
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-                "http_version": null,
-                "status": {
-                    "code": 200,
-                    "message": "OK"
-                }
-            }
-        },
         {
             "recorded_at": "Tue, 24 Nov 2015 15:17:08 GMT",
             "request": {
@@ -1864,6 +1790,78 @@
                     "message": "OK"
                 }
             }
+        },
+        {
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+                "body": {
+                    "base64_string": "",
+                    "encoding": "US-ASCII"
+                },
+                "headers": {
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+                        "*/*"
+                    ],
+                    "Accept-Charset": [
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+                        "gzip,deflate,identity"
+                    ],
+                    "Accept-Language": [
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+                    "Connection": [
+                        "keep-alive"
+                    ],
+                    "Host": [
+                        "zurrose.com"
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+                    "Keep-Alive": [
+                        300
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+                    "User-Agent": [
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+                "uri": "http://zurrose.com/fileadmin/main/lib/download.php?file=/fileadmin/user_upload/downloads/ProduktUpdate/IGM11_mit_MwSt/Vollstamm/transfer.dat"
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+                    "Content-Disposition": [
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+                    ],
+                    "Content-Length": 4058,
+                    "Content-Type": [
+                        "application/octet-stream"
+                    ],
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+                },
+                "http_version": null,
+                "status": {
+                    "code": 200,
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metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: oddb2xml
 version: !ruby/object:Gem::Version
-  version: 2.3.0
+  version: 2.3.1
 platform: ruby
 authors:
 - Yasuhiro Asaka, Zeno R.R. Davatz, Niklaus Giger