oddb2xml 2.1.6 → 2.1.7

checksums.yaml

@@ -1,7 +1,7 @@
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 SHA1:
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-  data.tar.gz: 296253b38b02e80c06874f12eae3c8cdc48a3fdc
+  metadata.gz: 899a0f8501e70e79d800f160bfd50b4fbf370100
+  data.tar.gz: 54f75e31226c4676ee2b7f1a4c7c893c104dba27
 SHA512:
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-  data.tar.gz: 68104c147630445ab5c2a1a493bacab6c1a53c8bfae15f8f3a3903a865026164bfce8f1704812959450869bb522eeb82cc89a89cb3c1c6408ced64babf50e134
+  metadata.gz: 56dd104a5a3363d62de7ba797a1d5a20634365cf5282331a1c8c061561cdf4e0dedef81081af7c0c408522a0cf321ac240087dbd4031540da9e51c1964609e03
+  data.tar.gz: 370cdc20ba9bea205d03f97a44898c05ca46394eba0ded6003444f91ab2d8803be664ae1e55d9f6026f9271415ca22c2b4aed4246585a319a777b37882bd449c

data/Gemfile.lock

@@ -1,10 +1,10 @@
 PATH
   remote: .
   specs:
-    oddb2xml (2.1.6)
+    oddb2xml (2.1.7)
       archive-tar-minitar (~> 0.5.2)
       mechanize (~> 2.5.1)
-      nokogiri (~> 1.5.10)
+      nokogiri
       parslet (~> 1.7.0)
       rubyXL (~> 3.3.1)
       rubyzip (~> 1.1.3)
@@ -51,9 +51,11 @@ GEM
       webrobots (~> 0.0, >= 0.0.9)
     method_source (0.8.2)
     mime-types (1.25.1)
+    mini_portile (0.6.2)
     net-http-digest_auth (1.4)
     net-http-persistent (2.9.4)
-    nokogiri (1.5.11)
+    nokogiri (1.6.6.2)
+      mini_portile (~> 0.6.0)
     nori (2.3.0)
     ntlm-http (0.1.1)
     parslet (1.7.0)

data/History.txt

@@ -1,3 +1,9 @@
+=== 2.1.7 / 15.06.2015
+
+* Fixed option -o which did not produce any meaningful oddb_fi.xml
+* Added KOMPENDIUM_PRODUCT to xsd file
+* Added style for each KOMPENDIUM_PRODUCT
+
 === 2.1.6 / 10.06.2015
 
 * Avoid error when Packungen.xlsx does not contain a name for a product (upstream error, missing Combizym, Dragées)

data/lib/oddb2xml/builder.rb

@@ -965,13 +965,14 @@ module Oddb2xml
                 'DT'      => ''
               ) {
                 unless info[:name].empty?
-                  xml.name  { xml.p(info[:name]) }
+                  xml.name info[:name]
                 end
                 unless info[:owner].empty?
-                  xml.owner { xml.p(info[:owner]) }
+                  xml.owner info[:owner]
                 end
                 xml.monid     info[:monid]                    unless info[:monid].empty?
-                xml.paragraph { xml.cdata(info[:paragraph]) } unless info[:paragraph].empty?
+                xml.style { xml.cdata(info[:style]) } if info[:style]
+                xml.paragraph { xml.cdata(Nokogiri::HTML.fragment(info[:paragraph].to_html).to_html(:encoding => 'UTF-8')) } if info[:paragraph]
               }
             end
           end
@@ -997,21 +998,27 @@ module Oddb2xml
             @infos[lang].each_with_index do |info, i|
               info_index[info[:monid]] = i
             end
-          end
-          @products.group_by{|obj| obj[:ean] 
-          }.each_pair do |monid, products|
-            if info_index[monid]
-              xml.KP('DT' => '') {
-                xml.MONID monid
-                products.each do |obj|
-                  xml.GTIN obj[:ean]
-                  length += 1
-                end
-                # as orphans ?
-                xml.DEL(@orphans.include?(monid) ? true : false)
-              }
+            # prod
+            @products.each do |prod|
+              next unless  prod[:seq] and prod[:seq][:packages]
+              seq = prod[:seq]
+              prod[:seq][:packages].each {
+                                          |phar, package|
+                                         next unless package[:swissmedic_number8]
+                                         m  = /(\d{5})(\d{3})/.match(package[:swissmedic_number8])
+                                         next unless m
+                                         number = m[1].to_s
+                                         idx = info_index[number]
+                                         next unless idx
+                                         xml.KP('DT' => '') {
+                                          xml.MONID @infos[lang][idx][:monid]
+                                          xml.PRDNO seq[:product_key] unless seq[:product_key].empty?
+                                          # as orphans ?
+                                          xml.DEL   @orphans.include?(number) ? true : false
+                                        }
+                  }
+              end
             end
-          end
           xml.RESULT {
             xml.OK_ERROR   'OK'
             xml.NBR_RECORD length

data/lib/oddb2xml/extractor.rb

@@ -354,25 +354,21 @@ module Oddb2xml
         item[:refdata] = true,
         item[:name]  = (name = pac.title) ? name : ''
         item[:owner] = (ownr = pac.authHolder) ? ownr : ''
-        if content = /cdata/.match(pac.content)
-          html = Nokogiri::HTML(content.to_s)
-          # all HTML contents without MonTitle and ownerCompany
-          item[:paragraph] =  "<title><p>#{item[:name]}</p></title>" +
-             ((paragraph = html.xpath("///div[@class='paragraph']")) ? paragraph.to_s : '')
-          if text = html.xpath("///div[@id='Section7750']/p").text
-            # 1 ~ 3 swissmedic number
-            if text =~ /(\d{5})[,\s]*(\d{5})?|(\d{5})[,\s]*(\d{5})?[,\s]*(\d{5})?/
+        item[:style] =  Nokogiri::HTML.fragment(pac.style).to_html(:encoding => 'UTF-8')
+        html = Nokogiri::HTML.fragment(pac.content.force_encoding('UTF-8'))
+        item[:paragraph] = html
+        numbers =  /(\d{5})[,\s]*(\d{5})?|(\d{5})[,\s]*(\d{5})?[,\s]*(\d{5})?/.match(html)
+        if numbers
               [$1, $2, $3].compact.each do |n| # plural
                 item[:monid] = n
                 data[lang] << item
               end
-            end
-          end
         end
       end
       data
     end
   end
+
   class EphaExtractor < Extractor
     def initialize(str)
       @io = StringIO.new(str)

data/lib/oddb2xml/version.rb

@@ -1,3 +1,3 @@
 module Oddb2xml
-  VERSION = "2.1.6"
+  VERSION = "2.1.7"
 end

data/lib/oddb2xml/xml_definitions.rb

@@ -229,6 +229,7 @@ class MedicalInformationContent
   attribute :lang
   element :title
   element :authHolder
+  element :authNrs
   element :style
   element :content
 end

data/oddb2xml.gemspec

@@ -23,7 +23,7 @@ Gem::Specification.new do |spec|
   spec.add_dependency 'rubyzip', '~> 1.1.3'
   spec.add_dependency 'archive-tar-minitar', '~> 0.5.2'
   spec.add_dependency 'mechanize', '~> 2.5.1'
-  spec.add_dependency 'nokogiri', '~> 1.5.10'
+  spec.add_dependency 'nokogiri'
   spec.add_dependency 'savon', '~> 2.4.0'
   spec.add_dependency 'spreadsheet', '~> 1.0.0'
   spec.add_dependency 'rubyXL', '~> 3.3.1'

data/oddb2xml.xsd

@@ -1113,4 +1113,51 @@
       </xs:restriction>
     </xs:simpleType>
   </xs:element>
+  <xs:element name="KP">
+    <xs:complexType>
+      <xs:sequence>
+        <xs:element name="MONID" type="xs:string" />
+        <xs:element name="PRDNO" type="xs:string" />
+        <xs:element name="DEL" type="xs:boolean" />
+      </xs:sequence>
+      <xs:attribute name="DT" use="required"/>
+    </xs:complexType>
+  </xs:element>
+  <xs:element name="KOMPENDIUM_PRODUCT">
+    <xs:complexType>
+      <xs:sequence>
+        <xs:element maxOccurs="unbounded" ref="ns1:KP"/>
+        <xs:element ref="ns1:RESULT"/>
+      </xs:sequence>
+      <xs:attribute name="CREATION_DATETIME" use="required"/>
+      <xs:attribute name="PROD_DATE" use="required"/>
+      <xs:attribute name="VALID_DATE" use="required"/>
+    </xs:complexType>
+  </xs:element>
+
+  <xs:element name="KMP">
+    <xs:complexType>
+      <xs:sequence>
+        <xs:element name="name" type="xs:string" />
+        <xs:element name="owner" type="xs:string" />
+        <xs:element name="monid" type="xs:string" />
+        <xs:element name="style" type="xs:string" />
+        <xs:element name="paragraph" type="xs:string" />
+      </xs:sequence>
+      <xs:attribute name="MONTYPE" use="required"/>
+      <xs:attribute name="LANG" use="required"/>
+      <xs:attribute name="DT" use="required"/>
+    </xs:complexType>
+  </xs:element>
+	<xs:element name="KOMPENDIUM">
+    <xs:complexType>
+      <xs:sequence>
+        <xs:element maxOccurs="unbounded" ref="ns1:KMP"/>
+        <xs:element ref="ns1:RESULT"/>
+      </xs:sequence>
+      <xs:attribute name="CREATION_DATETIME" use="required"/>
+      <xs:attribute name="PROD_DATE" use="required"/>
+      <xs:attribute name="VALID_DATE" use="required"/>
+    </xs:complexType>
+  </xs:element>
 </xs:schema>

data/spec/builder_spec.rb

@@ -32,7 +32,7 @@ def check_validation_via_xsd
   @oddb2xml_xsd = File.expand_path(File.join(File.dirname(__FILE__), '..', 'oddb2xml.xsd'))
   File.exists?(@oddb2xml_xsd).should eq true
   files = Dir.glob('*.xml')
-  xsd = Nokogiri::XML::Schema(File.read(@oddb2xml_xsd))                                        
+  xsd = Nokogiri::XML::Schema(File.read(@oddb2xml_xsd))
   files.each{
     |file|
     $stderr.puts "Validating file #{file} with #{File.size(file)} bytes" if $VERBOSE
@@ -55,6 +55,34 @@ describe Oddb2xml::Builder do
   after(:each) do
     Dir.chdir @savedDir if @savedDir and File.directory?(@savedDir)
   end
+  context 'fachinfo' do
+    let(:cli) do
+        opts = {}
+        @oddb_fi_xml  = File.expand_path(File.join(Oddb2xml::WorkDir, 'oddb_fi.xml'))
+        @oddb_fi_product_xml  = File.expand_path(File.join(Oddb2xml::WorkDir, 'oddb_fi_product.xml'))
+        options = Oddb2xml::Options.new
+        options.parser.parse!(['-o'])
+        Oddb2xml::Cli.new(options.opts)
+    end
+
+    it 'should return produce a correct oddb_fi.xml' do
+      # res = buildr_capture(:stdout){ cli.run }
+      cli.run
+      File.exists?(@oddb_fi_xml).should eq true
+      inhalt = IO.read(@oddb_fi_xml)
+      /<KMP/.match(inhalt.to_s).to_s.should eq '<KMP'
+      /<style><!\[CDATA\[p{margin-top/.match(inhalt.to_s).to_s.should eq '<style><![CDATA[p{margin-top'
+      m = /<paragraph><!\[CDATA\[(.+)\n(.*)/.match(inhalt.to_s)
+      m[1].should eq '<?xml version="1.0" encoding="utf-8"?><div xmlns="http://www.w3.org/1999/xhtml">'
+      expected = '<p class="s2"> </p>'
+      m[2].should eq '<p class="s2"> </p>'
+      File.exists?(@oddb_fi_product_xml).should eq true
+      inhalt = IO.read(@oddb_fi_product_xml)
+      skip "Niklaus does not know how to create a valid oddb_fi_product.xml"
+      check_validation_via_xsd
+    end
+  end
+
   context 'XSD-generation: ' do
     let(:cli) do
         opts = {}

data/spec/extractor_spec.rb

@@ -62,10 +62,32 @@ describe Oddb2xml::MigelExtractor do
 end
 
 describe Oddb2xml::SwissmedicInfoExtractor do
+  include ServerMockHelper
   before(:each) do
-    setup_epha_atc_csv_mock
+    setup_swissmedic_info_server_mock
+    @downloader = Oddb2xml::SwissmedicInfoDownloader.new
   end
+  context 'builds fachfinfo' do
+    it {
+        xml = @downloader.download
+        @infos = Oddb2xml::SwissmedicInfoExtractor.new(xml).to_hash
+        expect(@infos.size).to eq(1)
+        erbiumcitrat = nil
+        @infos['de'].each{|info|
+                    erbiumcitrat = info if /Erbiumcitrat/.match(info[:name])
+                   }
+        expect(erbiumcitrat[:owner]).to eq('CBI Medical Products Vertriebs GmbH')
+        expect(erbiumcitrat[:paragraph].to_s).to match(/Packungen/)
+        expect(erbiumcitrat[:paragraph].to_s).to match(/Stand der Information/)
+        expect(erbiumcitrat[:paragraph].to_s).to match(/Zulassungsinhaberin/)
+      }
+  end
+end
 
+describe Oddb2xml::SwissmedicExtractor do
+  before(:each) do
+    setup_epha_atc_csv_mock
+  end
   context 'when transfer.dat is empty' do
     subject { Oddb2xml::SwissmedicInfoExtractor.new("") }
     it { expect(subject.to_hash).to be_empty }
@@ -123,7 +145,6 @@ describe Oddb2xml::MedregbmExtractor do
 end
 
 describe Oddb2xml::ZurroseExtractor do
-if false
   context 'when transfer.dat is empty' do
     subject { Oddb2xml::ZurroseExtractor.new("") }
     it { expect(subject.to_hash).to be_empty }
@@ -200,11 +221,10 @@ if false
       DAT
       Oddb2xml::ZurroseExtractor.new(dat, true)
     end
-    #it { expect(subject.to_hash.keys.first).to eq("7680316950157") }
+    it { expect(subject.to_hash.keys.first).to eq("0000008807890") }
     it "should set the correct SALECD cmut code" do expect(subject.to_hash.values.first[:cmut]).to eq("2") end
-    it "should set the correct SALECD description" do expect(subject.to_hash.values.first[:description]).to eq("Ethacridin lactat 1‰ 100ml") end
-  end if false
-end
+    it "should set the correct SALECD description" do expect(subject.to_hash.values.first[:description]).to match(/Ethacridin lactat 1.+ 100ml/) end
+  end
   context 'when parsing examples' do
     subject do
       filename = File.expand_path(File.join(__FILE__, '..', 'data', 'zurrose_transfer.dat'))
@@ -228,6 +248,4 @@ end
 
   end
 
-
-
 end

data/test_options.rb

@@ -56,6 +56,7 @@ unless 'localhost.localdomain'.eql?(Socket.gethostbyname(Socket.gethostname).fir
   test_one_call('oddb2xml --append')
 end
 test_one_call('oddb2xml -t md -c tar.gz')
+test_one_call('oddb2xml -o')
 test_one_call('oddb2xml -f xml')
 test_one_call('oddb2xml -f dat')
 test_one_call('oddb2xml -t md')

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: oddb2xml
 version: !ruby/object:Gem::Version
-  version: 2.1.6
+  version: 2.1.7
 platform: ruby
 authors:
 - Yasuhiro Asaka, Zeno R.R. Davatz
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-06-10 00:00:00.000000000 Z
+date: 2015-06-16 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rubyzip
@@ -56,16 +56,16 @@ dependencies:
   name: nokogiri
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
-        version: 1.5.10
+        version: '0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
-        version: 1.5.10
+        version: '0'
 - !ruby/object:Gem::Dependency
   name: savon
   requirement: !ruby/object:Gem::Requirement