oddb2xml 2.0.5 → 2.0.6
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- checksums.yaml +13 -5
- data/Gemfile.lock +26 -19
- data/History.txt +5 -0
- data/dokumentation_calc.textile +50 -0
- data/lib/oddb2xml/builder.rb +9 -4
- data/lib/oddb2xml/calc.rb +1 -1
- data/lib/oddb2xml/cli.rb +1 -0
- data/lib/oddb2xml/compositions_syntax.rb +368 -0
- data/lib/oddb2xml/extractor.rb +13 -4
- data/lib/oddb2xml/parslet_compositions.rb +598 -0
- data/lib/oddb2xml/version.rb +1 -1
- data/oddb2xml.gemspec +1 -0
- data/spec/builder_spec.rb +1 -1
- data/spec/calc_spec.rb +102 -121
- data/spec/composition_syntax_spec.rb +502 -0
- data/spec/data/compositions.txt +8937 -0
- data/spec/data/swissmedic_package-galenic.xlsx +0 -0
- data/spec/data/zurrose_transfer.dat +5 -0
- data/spec/extractor_spec.rb +40 -0
- data/spec/parslet_spec.rb +1268 -0
- data/spec/spec_helper.rb +8 -0
- metadata +56 -34
- data/lib/oddb2xml/parse_compositions.rb +0 -106
@@ -0,0 +1,1268 @@
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# encoding: utf-8
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begin
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require 'pry'
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rescue LoadError
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end
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require 'pp'
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require 'spec_helper'
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require "#{Dir.pwd}/lib/oddb2xml/parslet_compositions"
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require 'parslet/rig/rspec'
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hostname = Socket.gethostbyname(Socket.gethostname).first
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RunAllCompositionsTests = /travis|localhost/i.match(hostname) != nil # takes about five minutes to run!
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puts "hostname is #{hostname} RunAllCompositionsTests #{RunAllCompositionsTests}"
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# Testing whether 8937 composition lines can be parsed. Found 380 errors in 293 seconds
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# 520 examples, 20 failures, 1 pending
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RunCompositionExamples = true
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RunSubstanceExamples = true
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RunFailingSpec = false
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RunExcipiensTest = true
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RunSpecificTests = true
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RunMostImportantParserTests = true
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describe ParseComposition do
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to_add = %(
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VERBOSE_MESSAGES = true
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pp composition; binding.pry
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)
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end
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describe ParseComposition do
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context "should handle missing arom.: before excipiens" do
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string = "nicotinum 4 mg ut nicotini resinas, aromatica, antiox.: E 321, arom.: excipiens pro praeparatione"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.source).to eq string}
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specify { expect( composition.substances.size).to eq 3 }
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specify { expect( composition.substances.first.name).to eq "Nicotinum" } # TODO: is not Benzocainum
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end
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context "should handle missing Label A:) in pollinis allergeni extractu" do
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string = '"pollinis allergeni extractum (alnus glutinosa, betula alba, corylus avellana) 300 U.: excipiens ad solutionem pro 1 ml'
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composition = ParseComposition.from_string(string)
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specify { expect(composition.source).to eq string}
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specify { expect( composition.substances.size).to eq 0 }
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specify { expect( composition.label).to eq 'A' }
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specify { expect( composition.composition.label_description).to eq 'pollinis allergeni extractum (alnus glutinosa, betula alba, corylus avellana) 300 U.' }
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end
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context "should handle dose with /" do
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string = 'poly(dl-lactidum-co-glycolidum) 75/25'
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composition = ParseComposition.from_string(string)
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specify { expect(composition.source).to eq string}
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specify { expect( composition.substances.first.name).to eq "Poly(dl-lactidum-co-glycolidum)" }
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specify { expect( composition.substances.first.dose.to_s).to eq '75/25' }
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end
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context "should handle per centum" do
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string = 'acidum nitricum 70 per centum 537 mg, acidum aceticum glaciale 20.4 mg, acidum oxalicum dihydricum 58.6 mg, zinci nitras hexahydricus 6 mg, excipiens ad solutionem pro 1 ml'
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composition = ParseComposition.from_string(string)
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specify { expect(composition.source).to eq string}
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specify { expect( composition.substances.first.name).to eq "Acidum Nitricum 70 Per Centum)" }
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end
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context "should handle Praeparatio sicca and polysorbatum" do
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string = 'Praeparatio sicca cum solvens: praeparatio sicca: albiglutidum 66.95 mg, trehalosum dihydricum, mannitolum, dinatrii phosphas anhydricus, natrii dihydrogenophosphas monohydricus, polysorbatum 80, solvens: aqua ad iniectabilia 0.65 ml pro vitro'
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composition = ParseComposition.from_string(string)
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specify { expect(composition.source).to eq string}
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specify { expect( composition.substances.first.name).to eq "Albiglutidum)" }
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specify { expect( composition.label).to eq "Praeparatio sicca cum solvens: praeparatio sicca:" }
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end
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context "should handle dose with +/-" do
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string = 'enzephalitidis japanensis virus antigenum (Stamm: SA-14-2) 6.0 +/-1.2 µg, aluminium ut aluminii oxidum hydricum, kalii dihydrogenophosphas, dinatrii phosphas anhydricus, natrii chloridum, aqua q.s. ad solutionem pro 0.5 ml'
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composition = ParseComposition.from_string(string)
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specify { expect(composition.source).to eq string}
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specify { expect( composition.substances.first.name).to eq "Enzephalitidis Japanensis Virus Antigenum (stamm: Sa-14-2)" }
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specify { expect( composition.substances.first.dose.to_s).to eq '6.0 +/-1.2 µg/0.5 ml' }
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end
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context "should handle label Praeparatio cryodesiccata (Thrombin)" do
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string = 'Praeparatio cryodesiccata (Thrombin): thrombinum humanum 500 U.I., natrii chloridum, natrii citras dihydricus, pro vitro'
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composition = ParseComposition.from_string(string)
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specify { expect(composition.source).to eq string}
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specify { expect( composition.substances.first.name).to eq "Thrombinum Humanum" }
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specify { expect( composition.label).to eq "Praeparatio cryodesiccata (Thrombin):" }
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end
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context "should handle '150 U.I. hFSH et 150 U.I. hLH'" do
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string =
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'Tela cum praeparatione (Panel 1): niccoli sulfas 0.16 mg, alcoholes adipis lanae 0.81 mg, neomycini sulfas 0.49 mg, kalii dichromas 44 µg, Cain-mix: benzocainum 0.364 mg, cinchocaini hydrochloridum 73 µg, tetracaini hydrochloridum 73 µg, Parfum-Mix: amylcinnamaldehydum 15 µg, isoeugenolum 15 µg, cinnamaldehydum 34 µg, eugenolum 34 µg, alcohol cinnamylicus 54 µg, hydroxycitronellalum 54 µg, geraniolum 70 µg, evernia prunastri 70 µg, colophonium 0.97 mg, E 320, E 321, Paraben-Mix: E 218 0.16 mg, E 214 0.16 mg, E 216 0.16 mg, butylis parahydroxybenzoas 0.16 mg, benzylis parahydroxybenzoas 0.16 mg, Negativ-Kontrolle, balsamum peruvianum 0.65 mg, ethylendiamini dihydrochloridum 41 µg, cobalti dichloridum 16 µg, excipiens pro praeparatione'
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composition = ParseComposition.from_string(string)
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specify { expect(composition.source).to eq string}
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context "wrong name Benzocainum" do
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specify { expect( composition.substances.first.name).to eq "Niccoli Sulfas" } # TODO: is not Benzocainum
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end
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specify { expect( composition.label).to eq "Tela cum praeparatione (Panel 1):" }
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end
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context "should handle '150 U.I. hFSH et 150 U.I. hLH'" do
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string = 'Praeparatio cryodesiccata: menotropinum 150 U.I. hFSH et 150 U.I. hLH, gonadotropinum chorionicum 7-21 U.I. hCG, lactosum monohydricum, pro vitro'
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composition = ParseComposition.from_string(string)
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specify { expect(composition.source).to eq string}
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specify { expect( composition.substances.first.name).to eq "Menotropinum" }
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specify { expect( composition.substances.first.dose.to_s).to eq "150 U.I. hFSH et 150 U.I. hLH" }
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end
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context "should handle '&' and 'deklr.'" do
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string = 'TM: cardiospermum halicacabum 100 mg, cetearyl octanoat & isopropylmyristat deklar., alcohol benzylicus, aqua q.s. ad unguentum pro'
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composition = ParseComposition.from_string(string)
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composition = ParseComposition.from_string('macrogoli 9 aether laurilicus 5 mg, ethanolum 50 mg')
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specify { expect( composition.substances.first.name).to eq "Tm: Cardiospermum Halicacabum" }
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end
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context "should handle 'potenziert mit: excipiens pro compresso'" do
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string = 'ambra grisea D6 30 mg, conium maculatum D3 30 mg, anamirta cocculus D4 210 mg, petroleum rectificatum D8 30 mg, potenziert mit: excipiens pro compresso'
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composition = ParseComposition.from_string(string)
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specify { expect(composition.source).to eq string}
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specify { expect(composition.label).to eq nil }
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specify { expect(composition.label_description).to eq nil }
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specify { expect(composition.galenic_form).to eq nil }
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specify { expect(composition.route_of_administration).to eq nil }
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specify { expect( composition.substances.first.name).to eq "Terra Silicea Spec." }
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end
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context "allow substancename with 'ethanol.'" do
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string = "mandragora ethanol. decoctum D1 30 mg"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.size).to eq 1 }
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specify { expect(composition.substances.first.name).to eq "Mandragora Ethanol. Decoctum D1" }
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specify { expect(composition.substances.first.dose.to_s).to eq "30 mg" }
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end
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context "allow substance complicated, calculated dose '6.0 +/-1.2 µg'" do
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string =
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"piscis oleum 500 mg corresp. acida carboxylica omega-3 oligoinsaturata 150 mg ut acidum eicosapentaenoicum 90 mg et acidum docosahexaenoicum 60 mg, excipiens pro capsula"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.first.name).to eq 'Magnesii Aspartas Dihydricus' } # TODO:
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specify { expect(composition.substances.first.chemical_substance.name).to eq 'Magnesium' } # TODO:
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specify { expect(composition.substances.size).to eq 5 }
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end
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context "allow substance complicated, calculated dose '6.0 +/-1.2 µg'" do
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string =
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"enzephalitidis japanensis virus antigenum (Stamm: SA-14-2) 6.0 +/-1.2 µg, aluminium ut aluminii oxidum hydricum, kalii dihydrogenophosphas, dinatrii phosphas anhydricus, natrii chloridum, aqua q.s. ad solutionem pro 0.5 ml"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.first.name).to eq 'Magnesii Aspartas Dihydricus' }
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specify { expect(composition.substances.first.chemical_substance.name).to eq 'Magnesium' }
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specify { expect(composition.substances.size).to eq 5 }
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end
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end if RunFailingSpec
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describe ParseComposition do
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context "allow 2,2'-methylen-bis(6-tert.-butyl-4-methyl-phenolum)" do
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string = "2,2'-methylen-bis(6-tert.-butyl-4-methyl-phenolum)"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.first.name).to eq "2,2'-methylen-bis(6-tert.-butyl-4-methyl-phenolum)" }
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specify { expect(composition.substances.size).to eq 1 }
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end
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context "allow substancename with 90 % " do
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string =
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"acidum nitricum 70 per centum 580.66 mg, acidum aceticum glaciale 41.08 mg, acidum oxalicum dihydricum 57.32 mg, acidum lacticum 90 % 4.55 mg, cupri(II) nitras trihydricus 0.048 mg, excipiens ad solutionem pro 1 ml"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.size).to eq 5 }
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substance = composition.substances.find{ |x| /lacticum/i.match(x.name) }
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specify { expect(composition.substances.first.name).to eq "Acidum Nitricum 70 Per Centum" }
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specify { expect(composition.substances.first.dose.to_s).to eq "580.66 mg/ml" }
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specify { expect(substance.name).to eq 'Acidum Lacticum 90 %' }
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specify { expect(substance.dose.to_s).to eq '4.55 mg/ml' }
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end
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context "allow substance with two corresp" do
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string = "magnesii aspartas dihydricus 3.895 g corresp. magnesium 292 mg corresp. 12 mmol, arom.: bergamottae aetheroleum et alia, natrii cyclamas, saccharinum natricum, excipiens ad granulatum pro charta"
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composition = ParseComposition.from_string(string)
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context "with correct names" do
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specify { expect(composition.substances.first.name).to eq 'Magnesii Aspartas Dihydricus' }
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specify { expect(composition.substances.first.chemical_substance.name).to eq 'Magnesium' }
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end
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specify { expect(composition.substances.size).to eq 5 }
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end
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context "allow substances containing ut, corresp, arom," do
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string =
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"calcii carbonas 3 g corresp. calcium 1.2 g, cholecalciferolum 800 U.I. ut cholecalciferoli pulvis corresp. arom.: saccharinum, natrii cyclamas et alia, excipiens pro compresso"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.size).to eq 5 }
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end
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context "allow substances containing 'A + '" do
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string = "sennosida 20 mg corresp. sennosida A + B calcica 12 mg, excipiens pro compresso obducto"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.size).to eq 1 }
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specify { expect(composition.substances.first.name).to eq 'Sennosida' }
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specify { expect(composition.substances.first.chemical_substance.name).to eq 'Sennosida A + B Calcica' }
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end
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context "allow substances separted by ', et'" do
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string = "extractum spissum ex: echinaceae purpureae herbae recentis tinctura 1140 mg, ratio: 1:12, et echinaceae purpureae radicis recentis tinctura 60 mg, ratio: 1:11, excipiens pro compresso"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.size).to eq 2 }
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end
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context 'find kalium 40 mmol/l' do
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string = "kalium 40 mmol/l, chloridum 194 mmol/l, natrium 154 mmol/l, aqua ad iniectabilia q.s. ad solutionem pro 1000 ml"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.size).to eq 3 }
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specify { expect(composition.substances.first.name).to eq 'Kalium' }
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specify { expect(composition.substances.first.dose.to_s).to eq "40 mmol/l/1000 ml" }
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end
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context 'find corresp doses pro vase.' do
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string = "farfarae folii recentis succus ratio: 1:0.68-0.95"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.size).to eq 1 }
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specify { expect(composition.substances.last.name).to eq 'Farfarae Folii Recentis Succus' }
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specify { expect(composition.substances.last.more_info).to eq "ratio: 1:0.68-0.95" }
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end
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context 'find corresp doses pro vase.' do
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string = "doses pro vase 30/60"
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composition = ParseComposition.from_string(string)
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specify { expect( composition.substances.size).to eq 0 }
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# specify { expect( composition.substances.first.name).to eq 'Doses pro Vase' } # TODO: must be found somewher eles
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# specify { expect( composition.substances.first.dose.to_s).to eq '30/60' }
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end
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context 'find corresp. ca.' do
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string = "sal ems 100 % m/m, corresp. ca., natrium 308.7 mg/g"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.size).to eq 1 }
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specify { expect(composition.substances.last.name).to eq 'Sal Ems' }
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end
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context 'find correct result Solvens (i.m.)' do
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string = "Solvens (i.v.): aqua ad iniectabilia 5 ml, corresp. 20 mg, pro 5 ml"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.first).to eq nil }
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end
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240
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241
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context 'find correct result for dose 1 Mio U.I.' do
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string = "phenoxymethylpenicillinum kalicum 1 Mio U.I., conserv.: E 200, excipiens pro compresso obducto"
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composition = ParseComposition.from_string(string)
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specify { expect(composition.substances.size).to eq 2 }
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specify { expect(composition.substances.first.name).to eq 'Phenoxymethylpenicillinum Kalicum' }
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specify { expect(composition.substances.first.dose.to_s).to eq '1 Mio U.I.' }
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specify { expect(composition.substances.last.name).to eq 'E 200' }
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end
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context 'find dose with max.' do
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+
string = "residui: formaldehydum max. 100 µg"
|
252
|
+
composition = ParseComposition.from_string(string)
|
253
|
+
specify { expect(composition.substances.size).to eq 1 }
|
254
|
+
specify { expect(composition.substances.last.name).to eq 'Formaldehydum' }
|
255
|
+
end
|
256
|
+
|
257
|
+
context 'handle Corresp. 4000 kJ.' do
|
258
|
+
composition = ParseComposition.from_string('Corresp. 4000 kJ.')
|
259
|
+
specify { expect(composition.substances.size).to eq 0 }
|
260
|
+
specify { expect(composition.corresp).to eq '4000 kJ' }
|
261
|
+
end
|
262
|
+
|
263
|
+
context 'handle dose dose with g/dm²' do
|
264
|
+
string = 'Tela cum unguento 14 g/dm²'
|
265
|
+
composition = ParseComposition.from_string(string)
|
266
|
+
specify { expect(composition.substances.size).to eq 1 }
|
267
|
+
specify { expect(composition.substances.first.dose.to_s).to eq '14 g/dm²' }
|
268
|
+
specify { expect(composition.substances.first.name).to eq 'Tela Cum Unguento' }
|
269
|
+
end
|
270
|
+
|
271
|
+
context 'handle dose 2*10^9 CFU,' do
|
272
|
+
string = 'saccharomyces boulardii cryodesiccatus 250 mg corresp. cellulae vivae 2*10^9 CFU, excipiens pro capsula'
|
273
|
+
composition = ParseComposition.from_string(string)
|
274
|
+
specify { expect(composition.substances.size).to eq 1 }
|
275
|
+
specify { expect(composition.substances.first.chemical_substance.dose.to_s).to eq '2*10^9 CFU' }
|
276
|
+
specify { expect(composition.substances.first.name).to eq 'Saccharomyces Boulardii Cryodesiccatus' }
|
277
|
+
end
|
278
|
+
|
279
|
+
context 'handle dose followed by ratio' do
|
280
|
+
# 43996 1 Keppur, Salbe
|
281
|
+
string = "symphyti radicis recentis extractum ethanolicum liquidum 280 mg ratio: 1:3-4"
|
282
|
+
composition = ParseComposition.from_string(string)
|
283
|
+
specify { expect(composition.substances.size).to eq 1 }
|
284
|
+
specify { expect(composition.substances.first.name).to eq 'Symphyti Radicis Recentis Extractum Ethanolicum Liquidum' }
|
285
|
+
end
|
286
|
+
|
287
|
+
context 'find correct result Überzug: E 132' do
|
288
|
+
# 16863 1 Salvia Wild, Tropfen
|
289
|
+
string = "olanzapinum 15 mg, Überzug: E 132, excipiens pro compresso obducto."
|
290
|
+
composition = ParseComposition.from_string(string)
|
291
|
+
specify { expect(composition.substances.size).to eq 2 }
|
292
|
+
specify { expect(composition.substances.first.name).to eq 'Olanzapinum' }
|
293
|
+
specify { expect(composition.substances.last.name).to eq 'E 132' }
|
294
|
+
specify { expect(composition.substances.last.more_info).to eq 'Überzug' }
|
295
|
+
end
|
296
|
+
|
297
|
+
context "should handle ut followed by corresp. " do
|
298
|
+
# 65302 1 Exviera 250 mg, Filmtabletten
|
299
|
+
string = 'dasabuvirum 250 mg ut dasabuvirum natricum corresp. dasabuvirum natricum monohydricum 270.26 mg, excipiens pro compresso obducto'
|
300
|
+
composition = ParseComposition.from_string(string)
|
301
|
+
specify { expect(composition.label).to eq nil }
|
302
|
+
specify { expect(composition.label_description).to eq nil }
|
303
|
+
specify { expect(composition.substances.size).to eq 1 }
|
304
|
+
specify { expect(composition.substances.first.name).to eq 'Dasabuvirum' }
|
305
|
+
specify { expect(composition.substances.first.salts.size).to eq 1 }
|
306
|
+
specify { expect(composition.substances.first.salts.first.name).to eq 'Dasabuvirum Natricum Monohydricum' }
|
307
|
+
end
|
308
|
+
|
309
|
+
context 'find correct result for ut excipiens' do
|
310
|
+
# 16863 1 Salvia Wild, Tropfen
|
311
|
+
string = "drospirenonum 3 mg, ethinylestradiolum 20 µg ut excipiens pro compresso obducto"
|
312
|
+
composition = ParseComposition.from_string(string)
|
313
|
+
specify { expect(composition.substances.size).to eq 2 }
|
314
|
+
specify { expect(composition.substances.last.name).to eq 'Ethinylestradiolum' }
|
315
|
+
end
|
316
|
+
|
317
|
+
context 'find correct result compositions for DER: followed by corresp.' do
|
318
|
+
# 16863 1 Salvia Wild, Tropfen
|
319
|
+
string = "salviae extractum ethanolicum liquidum, DER: 1:4.2-5.0 corresp. ethanolum 40 % V/V"
|
320
|
+
composition = ParseComposition.from_string(string)
|
321
|
+
specify { expect(composition.substances.size).to eq 2 }
|
322
|
+
specify { expect(composition.substances.last.name).to eq 'DER: 1:4.2-5.0' }
|
323
|
+
end
|
324
|
+
|
325
|
+
context 'find correct result compositions for 00613 Pentavac' do
|
326
|
+
line_1 = "I) DTPa-IPV-Komponente (Suspension): toxoidum diphtheriae 30 U.I., toxoidum tetani 40 U.I., toxoidum pertussis 25 µg et haemagglutininum filamentosum 25 µg, virus poliomyelitis typus 1 inactivatum (D-Antigen) 40 U., virus poliomyelitis typus 2 inactivatum (D-Antigen) 8 U., virus poliomyelitis typus 3 inactivatum (D-Antigen) 32 U., aluminium ut aluminii hydroxidum hydricum ad adsorptionem, formaldehydum 10 µg, conserv.: phenoxyethanolum 2.5 µl, residui: neomycinum, streptomycinum, polymyxini B sulfas, medium199, aqua q.s. ad suspensionem pro 0.5 ml."
|
327
|
+
line_2 = "II) Hib-Komponente (Lyophilisat): haemophilus influenzae Typ B polysaccharida T-conjugatum 10 µg, trometamolum, saccharum, pro praeparatione."
|
328
|
+
txt = "#{line_1}\n#{line_2}"
|
329
|
+
composition = ParseComposition.from_string(line_1)
|
330
|
+
composition = ParseComposition.from_string(line_2)
|
331
|
+
info = ParseUtil.parse_compositions(txt)
|
332
|
+
|
333
|
+
specify { expect(info.first.label).to eq 'I' }
|
334
|
+
specify { expect(info.size).to eq 2 }
|
335
|
+
specify { expect(info.first.substances.size).to eq 14 }
|
336
|
+
toxoidum = info.first.substances.find{ |x| x.name.match(/Toxoidum Diphtheriae/i) }
|
337
|
+
specify { expect(toxoidum.class).to eq Struct::ParseSubstance }
|
338
|
+
if toxoidum
|
339
|
+
specify { expect(toxoidum.name).to eq 'Toxoidum Diphtheriae' }
|
340
|
+
specify { expect(toxoidum.qty.to_f).to eq 30.0 }
|
341
|
+
specify { expect(toxoidum.unit).to eq 'U.I./0.5 ml' }
|
342
|
+
end
|
343
|
+
end
|
344
|
+
|
345
|
+
context 'find correct result compositions for fluticasoni with chemical_dose' do
|
346
|
+
string = 'fluticasoni-17 propionas 100 µg, lactosum monohydricum q.s. ad pulverem pro 25 mg.'
|
347
|
+
composition = ParseComposition.from_string(string)
|
348
|
+
specify { expect(composition.substances.size).to eq 2 }
|
349
|
+
fluticasoni = composition.substances.find{ |x| x.name.match(/Fluticasoni/i) }
|
350
|
+
specify { expect(fluticasoni.name).to eq 'Fluticasoni-17 Propionas' }
|
351
|
+
specify { expect(fluticasoni.qty.to_f).to eq 100.0 }
|
352
|
+
specify { expect(fluticasoni.unit).to eq 'µg/25 mg' }
|
353
|
+
specify { expect(fluticasoni.dose.to_s).to eq "100 µg/25 mg" }
|
354
|
+
lactosum = composition.substances.find{ |x| x.name.match(/Lactosum/i) }
|
355
|
+
specify { expect(lactosum.name).to eq "Lactosum Monohydricum" }
|
356
|
+
specify { expect(lactosum.dose.to_s).to eq "25 mg" }
|
357
|
+
end
|
358
|
+
|
359
|
+
context 'find correct result Solvens (i.m.)' do
|
360
|
+
string = "Solvens (i.m.): aqua ad iniectabilia 2 ml pro vitro"
|
361
|
+
composition = ParseComposition.from_string(string)
|
362
|
+
specify { expect(composition.substances.first.name).to eq 'aqua ad iniectabilia 2 Ml pro Vitro' }
|
363
|
+
end
|
364
|
+
|
365
|
+
context "should handle Iscador" do
|
366
|
+
# 56829 sequence 3 Iscador M
|
367
|
+
string = 'extractum aquosum liquidum fermentatum 0.05 mg ex viscum album (mali) recens 0.01 mg, natrii chloridum, aqua q.s. ad solutionem pro 1 ml.'
|
368
|
+
composition = ParseComposition.from_string(string)
|
369
|
+
viscum = composition.substances.find{ |x| x.name.match(/viscum/i) }
|
370
|
+
specify { expect(viscum.name).to eq 'Extractum Aquosum Liquidum Fermentatum 0.05 Mg Ex Viscum Album (mali) Recens' }
|
371
|
+
specify { expect(viscum.qty).to eq 0.01 } # 0.0001 mg/ml
|
372
|
+
specify { expect(viscum.unit).to eq 'mg/ml' } # 0.0001 mg/ml
|
373
|
+
specify { expect(viscum.dose.qty).to eq 0.01 } # 0.0001 mg/ml
|
374
|
+
specify { expect(viscum.dose.unit).to eq 'mg/ml' } # 0.0001 mg/ml
|
375
|
+
specify { expect(viscum.dose.to_s).to eq '0.01 mg/ml' } # 0.0001 mg/ml
|
376
|
+
specify { expect(composition.source).to eq string }
|
377
|
+
end
|
378
|
+
|
379
|
+
context 'find correct result compositions for poloxamerum' do
|
380
|
+
# 47657 1 Nanocoll, Markierungsbesteck
|
381
|
+
string = "I): albuminum humanum colloidale 0.5 mg, stanni(II) chloridum dihydricum 0.2 mg, glucosum anhydricum, dinatrii phosphas monohydricus, natrii fytas (9:1), poloxamerum 238, q.s. ad pulverem pro vitro."
|
382
|
+
composition = ParseComposition.from_string(string)
|
383
|
+
specify { expect(composition.substances.size).to eq 6 }
|
384
|
+
poloxamerum = composition.substances.find{ |x| x.name.match(/poloxamerum/i) }
|
385
|
+
skip { expect(poloxamerum.name).to eq 'Poloxamerum 238' }
|
386
|
+
skip { expect(poloxamerum.qty.to_f).to eq "" }
|
387
|
+
specify { expect(poloxamerum.unit).to eq nil }
|
388
|
+
end
|
389
|
+
|
390
|
+
context "should handle DER followed by corresp" do
|
391
|
+
# 54024 1 Nieren- und Blasendragées S
|
392
|
+
string = 'DER: 4-5:1, corresp. arbutinum 24-30 mg'
|
393
|
+
composition = ParseComposition.from_string(string)
|
394
|
+
specify { expect(composition.source).to eq string }
|
395
|
+
specify { expect(composition.label).to eq nil }
|
396
|
+
specify { expect(composition.label_description).to eq nil }
|
397
|
+
specify { expect(composition.substances.size).to eq 1 }
|
398
|
+
specify { expect(composition.substances.first.name).to eq 'DER: 4-5:1' }
|
399
|
+
specify { expect(composition.substances.first.chemical_substance.name).to eq 'Arbutinum' }
|
400
|
+
end
|
401
|
+
|
402
|
+
context "should handle 'A): macrogolum 3350 100 g'" do
|
403
|
+
# 57900 1 Moviprep, Pulver
|
404
|
+
string = 'A): macrogolum 3350 100 g, natrii sulfas anhydricus 7.5 g'
|
405
|
+
composition = ParseComposition.from_string(string)
|
406
|
+
specify { expect(composition.source).to eq string }
|
407
|
+
specify { expect(composition.label).to eq 'A' }
|
408
|
+
specify { expect(composition.label_description).to eq nil }
|
409
|
+
specify { expect(composition.substances.size).to eq 2 }
|
410
|
+
specify { expect(composition.substances.first.name).to eq 'Macrogolum 3350' }
|
411
|
+
specify { expect(composition.substances.first.qty).to eq 100 }
|
412
|
+
specify { expect(composition.substances.first.unit).to eq 'g' }
|
413
|
+
end
|
414
|
+
|
415
|
+
context "should able to handle a simple ratio" do
|
416
|
+
string = 'allii sativi maceratum oleosum 270 mg, ratio: 1:10, excipiens pro capsula.'
|
417
|
+
composition = ParseComposition.from_string(string)
|
418
|
+
specify { expect(composition.source).to eq string }
|
419
|
+
specify { expect(composition.substances.size).to eq 1 }
|
420
|
+
specify { expect(composition.substances.first.name).to eq 'Allii Sativi Maceratum Oleosum' }
|
421
|
+
specify { expect(composition.substances.first.more_info).to eq 'ratio: 1:10' }
|
422
|
+
end
|
423
|
+
|
424
|
+
context "should able to handle multiple ratio" do
|
425
|
+
# 25273 1 Schoenenberger naturreiner Heilpflanzensaft, Thymian
|
426
|
+
string = 'thymi herbae recentis extractum aquosum liquidum, ratio: 1:1.5-2.4.'
|
427
|
+
composition = ParseComposition.from_string(string)
|
428
|
+
specify { expect(composition.source).to eq string }
|
429
|
+
specify { expect(composition.substances.size).to eq 1 }
|
430
|
+
specify { expect(composition.substances.first.name).to eq 'Thymi Herbae Recentis Extractum Aquosum Liquidum' }
|
431
|
+
specify { expect(composition.substances.first.more_info).to eq 'ratio: 1:1.5-2.4' }
|
432
|
+
end
|
433
|
+
|
434
|
+
context "should handles lines containing V): mannitolum 40 mg pro dosi" do
|
435
|
+
string = 'V): mannitolum 40 mg pro dosi'
|
436
|
+
composition = ParseComposition.from_string(string)
|
437
|
+
specify { expect(composition.source).to eq string }
|
438
|
+
specify { expect(composition.label).to eq 'V' }
|
439
|
+
specify { expect(composition.substances.size).to eq 1 }
|
440
|
+
end
|
441
|
+
|
442
|
+
|
443
|
+
context "should skip lines containing I) et II)" do
|
444
|
+
skip { "should skip lines containing I) et II)"
|
445
|
+
string = 'I) et II) et III) corresp.: aminoacida 48 g/l, carbohydrata 150 g/l, materia crassa 50 g/l, in emulsione recenter mixta 1250 ml'
|
446
|
+
composition = ParseComposition.from_string(string)
|
447
|
+
specify { expect(composition.source).to eq string }
|
448
|
+
specify { expect(composition.substances.size).to eq 0 }
|
449
|
+
}
|
450
|
+
end
|
451
|
+
|
452
|
+
context "should treat correctly CFU units" do
|
453
|
+
# 56015 Perskindol Cool avec consoude, gel
|
454
|
+
string = 'lactobacillus acidophilus cryodesiccatus min. 10^9 CFU'
|
455
|
+
composition = ParseComposition.from_string(string)
|
456
|
+
specify { expect(composition.substances.first.name).to eq 'Lactobacillus Acidophilus Cryodesiccatus' }
|
457
|
+
specify { expect(composition.substances.first.qty).to eq '10^9' }
|
458
|
+
specify { expect(composition.substances.first.unit).to eq 'CFU' }
|
459
|
+
end
|
460
|
+
|
461
|
+
context "should pass several () inside a name" do
|
462
|
+
composition = nil
|
463
|
+
strings = [
|
464
|
+
'a(eine klammer) und nachher',
|
465
|
+
'(eine klammer) und nachher',
|
466
|
+
'haemagglutininum influenzae A (eine klammer)' ,
|
467
|
+
'haemagglutininum influenzae A (eine klammer) und nachher' ,
|
468
|
+
'haemagglutininum influenzae A (H1N1) (in Klammer)' ,
|
469
|
+
'haemagglutininum influenzae A (H1N1) or (H5N3) (in Klammer) more' ,
|
470
|
+
'haemagglutininum influenzae A (H1N1) eins (second) even more' ,
|
471
|
+
'ab (H1N1)-like: dummy',
|
472
|
+
'Virus-Stamm A/California/7/2009 (H1N1)-like: reassortant virus NYMC X-179A',
|
473
|
+
'haemagglutininum influenzae A (H1N1) (Virus-Stamm A/California/7/2009 (H1N1)-like: reassortant virus NYMC X-179A)',
|
474
|
+
].each { |string|
|
475
|
+
composition = ParseComposition.from_string(string)
|
476
|
+
}
|
477
|
+
composition = ParseComposition.from_string(strings.last + ' 15 µg')
|
478
|
+
specify { expect(composition.substances.first.name.downcase).to eq strings.last.downcase }
|
479
|
+
specify { expect(composition.substances.first.qty).to eq 15 }
|
480
|
+
specify { expect(composition.substances.first.unit).to eq 'µg' }
|
481
|
+
end
|
482
|
+
|
483
|
+
context "should emit correct unit when excipiens contains pro X ml" do
|
484
|
+
string = 'glatiramerum acetas 20 mg corresp. glatiramerum 18 mg, mannitolum, aqua ad iniectabilia q.s. ad solutionem pro 0.5 ml.'
|
485
|
+
composition = ParseComposition.from_string(string)
|
486
|
+
specify { expect(composition.substances.first.name).to eq 'Glatiramerum Acetas' }
|
487
|
+
specify { expect(composition.substances.first.qty).to eq 20 }
|
488
|
+
specify { expect(composition.substances.first.unit).to eq 'mg/0.5 ml' }
|
489
|
+
specify { expect(composition.substances.first.chemical_substance.unit).to eq 'mg/0.5 ml' }
|
490
|
+
specify { expect(composition.substances.first.chemical_substance.name).to eq 'Glatiramerum' }
|
491
|
+
specify { expect(composition.substances.first.chemical_substance.qty).to eq 18 }
|
492
|
+
specify { expect(composition.substances.first.chemical_substance.unit).to eq 'mg/0.5 ml' }
|
493
|
+
end
|
494
|
+
|
495
|
+
context "should handle substance with a range" do
|
496
|
+
string = 'glyceroli monostearas 40-55'
|
497
|
+
composition = ParseComposition.from_string(string)
|
498
|
+
specify { expect(composition.substances.size).to eq 1 }
|
499
|
+
specify { expect(composition.substances.first.name).to eq 'Glyceroli Monostearas' }
|
500
|
+
specify { expect(composition.substances.first.dose.to_s).to eq '40-55' }
|
501
|
+
end
|
502
|
+
|
503
|
+
context "should handle mineralia with alia" do
|
504
|
+
string = 'mineralia: calcium 160 ut alia: ginseng extractum 50 mg'
|
505
|
+
composition = ParseComposition.from_string(string)
|
506
|
+
specify { expect(composition.substances.size).to eq 2 }
|
507
|
+
specify { expect(composition.substances.first.salts.size).to eq 0 }
|
508
|
+
specify { expect(composition.substances.first.name).to eq 'Calcium' } # TODO:
|
509
|
+
specify { expect(composition.substances.last.name).to eq 'Ginseng Extractum' } # TODO:
|
510
|
+
# TODO: specify { expect(composition.substances.first.dose.to_s).to eq '9 g/L 5 ml' }
|
511
|
+
end
|
512
|
+
|
513
|
+
context "should handle mineralia" do
|
514
|
+
string = 'mineralia: calcium 160 mg ut magnesium 120 mg ut ferrum 5.6 mg ut cuprum 1 mg ut manganum 1.4 mg ut iodum 60 µg ut molybdenum 60 µg'
|
515
|
+
composition = ParseComposition.from_string(string)
|
516
|
+
specify { expect(composition.substances.size).to eq 1 }
|
517
|
+
specify { expect(composition.substances.first.more_info).to eq "mineralia" }
|
518
|
+
specify { expect(composition.substances.first.salts.size).to eq 6 }
|
519
|
+
specify { expect(composition.substances.first.salts.first.name).to eq 'Magnesium' }
|
520
|
+
specify { expect(composition.substances.first.salts.first.qty).to eq 120.0 }
|
521
|
+
specify { expect(composition.substances.first.salts.first.unit).to eq 'mg' }
|
522
|
+
specify { expect(composition.substances.first.name).to eq 'Calcium' } # TODO:
|
523
|
+
# TODO: specify { expect(composition.substances.first.dose.to_s).to eq '9 g/L 5 ml' }
|
524
|
+
end
|
525
|
+
|
526
|
+
context "should handle solvens" do
|
527
|
+
string = 'Solvens: natrii chloridi solutio 9 g/L 5 ml.'
|
528
|
+
composition = ParseComposition.from_string(string)
|
529
|
+
specify { expect(composition.substances.size).to eq 1 }
|
530
|
+
specify { expect(composition.substances.first.more_info).to eq "Solvens" }
|
531
|
+
specify { expect(composition.substances.first.name).to eq 'Natrii Chloridi Solutio 9 G/l 5 Ml' } # TODO:
|
532
|
+
# TODO: specify { expect(composition.substances.first.dose.to_s).to eq '9 g/L 5 ml' }
|
533
|
+
end
|
534
|
+
|
535
|
+
context "should parse a complex composition" do
|
536
|
+
string = 'globulina equina (immunisé avec coeur) 8 mg'
|
537
|
+
string = 'globulina equina (immunisé avec coeur, tissu pulmonaire, reins de porcins) 8 mg'
|
538
|
+
composition = ParseComposition.from_string(string)
|
539
|
+
specify { expect(composition.substances.size).to eq 1 }
|
540
|
+
globulina = composition.substances.find{ |x| /globulina/i.match(x.name) }
|
541
|
+
specify { expect(globulina.name).to eq 'Globulina Equina (immunisé Avec Coeur, Tissu Pulmonaire, Reins De Porcins)' }
|
542
|
+
end
|
543
|
+
|
544
|
+
context "should return correct composition for containing '(acarus siro)" do
|
545
|
+
string = "acari allergeni extractum (acarus siro) 50'000 U., conserv.: phenolum, excipiens ad solutionem pro 1 ml."
|
546
|
+
composition = ParseComposition.from_string(string)
|
547
|
+
specify { expect(composition.source).to eq string }
|
548
|
+
specify { expect(composition.substances.size).to eq ExcipiensIs_a_Substance ? 3 : 2 } # got only 1
|
549
|
+
specify { expect(composition.substances.first.more_info).to eq nil }
|
550
|
+
specify { expect(composition.substances.first.name).to eq 'Acari Allergeni Extractum (acarus Siro)' }
|
551
|
+
specify { expect(composition.substances.last.name).to eq 'Phenolum' } # was Acari Allergeni Extractum (acarus Siro)
|
552
|
+
specify { expect(composition.substances.last.more_info).to match 'conserv' }
|
553
|
+
end
|
554
|
+
|
555
|
+
context "should return correct composition for containing 'A): acari allergeni extractum 50 U' (IKSNR 60606)" do
|
556
|
+
# Novo-Helisen Depot D. farinae/D. pteronyssinus Kombipackung 1-3, Injektionssuspension
|
557
|
+
string =
|
558
|
+
'A): acari allergeni extractum 50 U.: dermatophagoides farinae 50 % et dermatophagoides pteronyssinus 50 %, aluminium ut aluminii hydroxidum hydricum ad adsorptionem, natrii chloridum, conserv.: phenolum 4.0 mg, aqua q.s. ad suspensionem pro 1 ml.'
|
559
|
+
composition = ParseComposition.from_string(string)
|
560
|
+
composition.label_description
|
561
|
+
specify { expect(composition.label).to eq "A" }
|
562
|
+
specify { expect(composition.label_description).to eq "acari allergeni extractum 50 U." }
|
563
|
+
specify { expect(composition.source).to eq string }
|
564
|
+
specify { expect(composition.substances.size).to eq 5 }
|
565
|
+
pteronyssinus = composition.substances.find{ |x| /pteronyssinus/i.match(x.name) }
|
566
|
+
specify { expect(composition.substances.first.name).to eq 'Dermatophagoides Farinae' }
|
567
|
+
specify { expect(pteronyssinus.name).to eq 'Dermatophagoides Pteronyssinus' }
|
568
|
+
specify { expect(pteronyssinus.more_info).to eq nil }
|
569
|
+
end
|
570
|
+
|
571
|
+
context "should return correct composition for containing 'virus rabiei inactivatum" do
|
572
|
+
string = 'Praeparatio cryodesiccata: virus rabiei inactivatum (Stamm: Wistar Rabies PM/WI 38-1503-3M) min. 2.5 U.I.'
|
573
|
+
composition = ParseComposition.from_string(string)
|
574
|
+
specify { expect(composition.source).to eq string }
|
575
|
+
specify { expect(composition.substances.size).to eq 1 }
|
576
|
+
specify { expect(composition.substances.first.name).to eq "Virus Rabiei Inactivatum (stamm: Wistar Rabies Pm/wi 38-1503-3m)" }
|
577
|
+
specify { expect(composition.substances.first.qty).to eq 2.5 }
|
578
|
+
specify { expect(composition.substances.first.unit).to eq 'U.I.' }
|
579
|
+
specify { expect(composition.label).to eq "Praeparatio cryodesiccata:" }
|
580
|
+
end
|
581
|
+
|
582
|
+
context "should return correct composition for containing Histamin Equivalent Pric. (e.g IKSNR 58566)" do
|
583
|
+
# 58566 1 Soluprick SQ Phleum pratense, Lösung
|
584
|
+
string = 'pollinis allergeni extractum (Phleum pratense) 10 U., natrii chloridum, phenolum, glycerolum, aqua ad iniectabilia q.s. ad solutionem pro 1 ml, U = Histamin Equivalent Prick.'
|
585
|
+
composition = ParseComposition.from_string(string)
|
586
|
+
specify { expect(composition.source).to eq string }
|
587
|
+
specify { expect(composition.substances.size).to eq ExcipiensIs_a_Substance ? 5 : 4 }
|
588
|
+
specify { expect(composition.substances.first.name).to eq 'Pollinis Allergeni Extractum (phleum Pratense)' }
|
589
|
+
end
|
590
|
+
|
591
|
+
if RunExcipiensTest
|
592
|
+
context "should handle aqua ad iniectabilia" do
|
593
|
+
string = "aqua ad iniectabilia q.s. ad solutionem pro 5 ml"
|
594
|
+
composition = ParseComposition.from_string(string)
|
595
|
+
substance = composition.substances.first
|
596
|
+
if ExcipiensIs_a_Substance
|
597
|
+
specify { expect(substance.name).to eq 'aqua ad iniectabilia q.s. ad solutionem' }
|
598
|
+
specify { expect(substance.chemical_substance).to eq nil }
|
599
|
+
specify { expect(substance.qty).to eq 5.0}
|
600
|
+
specify { expect(substance.unit).to eq 'ml' }
|
601
|
+
else
|
602
|
+
specify { expect(substance).to eq nil }
|
603
|
+
end
|
604
|
+
end
|
605
|
+
|
606
|
+
context "should return correct substance for 'excipiens ad solutionem pro 1 ml corresp. ethanolum 59.5 % V/V'" do
|
607
|
+
string = "excipiens ad solutionem pro 1 ml corresp. ethanolum 59.5 % V/V"
|
608
|
+
composition = ParseComposition.from_string(string)
|
609
|
+
substance = composition.substances.first
|
610
|
+
if ExcipiensIs_a_Substance
|
611
|
+
# TODO: what should we report here? dose = pro 1 ml or 59.5 % V/V, chemical_substance = ethanolum?
|
612
|
+
# or does it only make sense as part of a composition?
|
613
|
+
specify { expect(substance.name).to eq 'Ethanolum' }
|
614
|
+
specify { expect(substance.cdose).to eq nil }
|
615
|
+
specify { expect(substance.qty).to eq 59.5}
|
616
|
+
specify { expect(substance.unit).to eq '% V/V' }
|
617
|
+
else
|
618
|
+
specify { expect(substance).to eq nil }
|
619
|
+
end
|
620
|
+
end
|
621
|
+
|
622
|
+
context "should return correct composition for 'excipiens ad emulsionem'" do
|
623
|
+
string = 'excipiens ad emulsionem pro 1 g"'
|
624
|
+
composition = ParseComposition.from_string(string)
|
625
|
+
substance = composition.substances.first
|
626
|
+
if ExcipiensIs_a_Substance
|
627
|
+
specify { expect(composition.source).to eq string }
|
628
|
+
specify { expect(composition.substances.size).to eq 0 }
|
629
|
+
else
|
630
|
+
specify { expect(substance).to eq nil }
|
631
|
+
end
|
632
|
+
end
|
633
|
+
|
634
|
+
context "should return correct substance for 'excipiens ad solutionem pro 1 ml corresp. ethanolum 59.5 % V/V'" do
|
635
|
+
string = "excipiens ad solutionem pro 1 ml corresp. ethanolum 59.5 % V/V"
|
636
|
+
composition = ParseComposition.from_string(string)
|
637
|
+
substance = composition.substances.first
|
638
|
+
if ExcipiensIs_a_Substance
|
639
|
+
specify { expect(substance.name).to eq 'Excipiens' }
|
640
|
+
specify { expect(substance.chemical_substance.name).to eq 'Ethanolum' }
|
641
|
+
specify { expect(substance.cdose.to_s).to eq ParseDose.new('59.5', '% V/V').to_s }
|
642
|
+
specify { expect(substance.qty).to eq 1.0}
|
643
|
+
specify { expect(substance.unit).to eq 'ml' }
|
644
|
+
else
|
645
|
+
specify { expect(substance).to eq nil }
|
646
|
+
end
|
647
|
+
end
|
648
|
+
|
649
|
+
context "should return correct substance for 'aqua q.s. ad suspensionem pro 0.5 ml'" do
|
650
|
+
string = "aqua q.s. ad suspensionem pro 0.5 ml"
|
651
|
+
composition = ParseComposition.from_string(string)
|
652
|
+
if ExcipiensIs_a_Substance
|
653
|
+
substance = composition.substances.first
|
654
|
+
specify { expect(substance.name).to eq 'aqua q.s. ad suspensionem' }
|
655
|
+
specify { expect(substance.qty).to eq 0.5}
|
656
|
+
specify { expect(substance.unit).to eq 'ml' }
|
657
|
+
else
|
658
|
+
specify { expect(substance).to eq nil }
|
659
|
+
end
|
660
|
+
end
|
661
|
+
|
662
|
+
context "should return correct substance for 'excipiens ad solutionem pro 3 ml corresp. 50 µg'" do
|
663
|
+
string = "excipiens ad solutionem pro 3 ml corresp. 50 µg"
|
664
|
+
composition = ParseComposition.from_string(string)
|
665
|
+
substance = composition.substances.first
|
666
|
+
if ExcipiensIs_a_Substance
|
667
|
+
specify { expect(substance.name).to eq 'Excipiens' }
|
668
|
+
specify { expect(substance.qty).to eq 3.0}
|
669
|
+
specify { expect(substance.unit).to eq 'ml' }
|
670
|
+
specify { expect(substance.cdose.qty).to eq 50.0}
|
671
|
+
specify { expect(substance.cdose.unit).to eq 'µg' }
|
672
|
+
else
|
673
|
+
specify { expect(substance).to eq nil}
|
674
|
+
end
|
675
|
+
end
|
676
|
+
|
677
|
+
context "should return correct substance for 'excipiens ad pulverem pro 1000 mg'" do
|
678
|
+
string = "excipiens ad pulverem pro 1000 mg"
|
679
|
+
CompositionTransformer.clear_substances
|
680
|
+
composition = ParseComposition.from_string(string)
|
681
|
+
substance = composition.substances.first
|
682
|
+
if ExcipiensIs_a_Substance
|
683
|
+
specify { expect(substance.name).to eq 'Excipiens' }
|
684
|
+
specify { expect(substance.qty).to eq 1000.0 }
|
685
|
+
specify { expect(substance.unit).to eq 'mg' }
|
686
|
+
else
|
687
|
+
specify { expect(substance).to eq nil }
|
688
|
+
end
|
689
|
+
end
|
690
|
+
end
|
691
|
+
context "should pass with 'etinoli 7900 U.I'" do
|
692
|
+
string = "retinoli 7900 U.I."
|
693
|
+
composition = ParseComposition.from_string(string)
|
694
|
+
specify { expect(composition.source).to eq string }
|
695
|
+
specify { expect(composition.substances.size).to eq 1 }
|
696
|
+
specify { expect(composition.substances.first.qty).to eq 7900.0 }
|
697
|
+
specify { expect(composition.substances.first.unit).to eq 'U.I.' }
|
698
|
+
specify { expect(composition.substances.first.name).to eq 'Retinoli' }
|
699
|
+
end
|
700
|
+
|
701
|
+
context "should return correct composition for containing 'absinthii herba 1.2 g pro charta" do
|
702
|
+
string = "absinthii herba 1.2 g pro charta"
|
703
|
+
composition = ParseComposition.from_string(string)
|
704
|
+
specify { expect(composition.source).to eq string }
|
705
|
+
specify { expect(composition.substances.size).to eq 1 }
|
706
|
+
specify { expect(composition.substances.first.name).to eq 'Absinthii Herba' }
|
707
|
+
end
|
708
|
+
|
709
|
+
context "should return correct composition for containing 'ad pulverem'" do
|
710
|
+
string = "pimpinellae radix 15 % ad pulverem"
|
711
|
+
composition = ParseComposition.from_string(string)
|
712
|
+
specify { expect(composition.source).to eq string }
|
713
|
+
specify { expect(composition.substances.size).to eq 1 }
|
714
|
+
specify { expect(composition.substances.first.name).to eq 'Pimpinellae Radix' }
|
715
|
+
end
|
716
|
+
|
717
|
+
context "should return correct composition for 'DER: 6:1'" do
|
718
|
+
string = "DER: 6:1"
|
719
|
+
composition = ParseComposition.from_string(string)
|
720
|
+
specify { expect(composition.source).to eq string }
|
721
|
+
specify { expect(composition.substances.size).to eq 1 }
|
722
|
+
specify { expect(composition.substances.first.name).to eq string }
|
723
|
+
end
|
724
|
+
|
725
|
+
context "should return correct composition for containing ' ut procaini hydrochloridum" do
|
726
|
+
string =
|
727
|
+
'procainum 10 mg ut procaini hydrochloridum'
|
728
|
+
composition = ParseComposition.from_string(string)
|
729
|
+
specify { expect(composition.source).to eq string }
|
730
|
+
specify { expect(composition.substances.size).to eq 1 }
|
731
|
+
specify { expect(composition.substances.first.name).to eq 'Procainum' }
|
732
|
+
specify { expect(composition.substances.first.salts.first.name).to eq 'Procaini Hydrochloridum' }
|
733
|
+
end
|
734
|
+
|
735
|
+
context "should return correct composition for containing 'ad pulverem'" do
|
736
|
+
string =
|
737
|
+
#"absinthii herba 15 %, anisi fructus 15 %, carvi fructus 15 %, foeniculi fructus 15 %, iuniperi pseudofructus 10 %, millefolii herba 15 %, pimpinellae radix 15 % ad pulverem.\n"
|
738
|
+
"pimpinellae radix 15 % ad pulverem.\n"
|
739
|
+
composition = ParseComposition.from_string(string)
|
740
|
+
specify { expect(composition.source).to eq string }
|
741
|
+
specify { expect(composition.substances.size).to eq 1 }
|
742
|
+
specify { expect(composition.substances.first.name).to eq 'Pimpinellae Radix' }
|
743
|
+
specify { expect(composition.substances.first.qty).to eq 15.0 }
|
744
|
+
specify { expect(composition.substances.first.unit).to eq '%' }
|
745
|
+
end
|
746
|
+
|
747
|
+
context "should return correct composition for containing 'excipiens ad globulos" do
|
748
|
+
string =
|
749
|
+
"abrus precatorius C6, aconitum napellus C6, atropa belladonna C6, calendula officinalis C6, chelidonium majus C6, viburnum opulus C6 ana partes, excipiens ad globulos.\n"
|
750
|
+
composition = ParseComposition.from_string(string)
|
751
|
+
specify { expect(composition.source).to eq string }
|
752
|
+
specify { expect(composition.substances.size).to eq 6 }
|
753
|
+
specify { expect(composition.substances.first.name).to eq 'Abrus Precatorius C6' }
|
754
|
+
end
|
755
|
+
|
756
|
+
context "should return correct composition for containing 'arom.: E 104'" do
|
757
|
+
string = 'gentianae radix 12 mg, primulae flos 36 mg, rumicis acetosae herba 36 mg, sambuci flos 36 mg, verbenae herba 36 mg, color.: E 104 et E 132, excipiens pro compresso obducto.'
|
758
|
+
composition = ParseComposition.from_string(string)
|
759
|
+
specify { expect(composition.source).to eq string }
|
760
|
+
specify { expect(composition.substances.size).to eq ExcipiensIs_a_Substance ? 8 : 7 }
|
761
|
+
e104 = composition.substances.find{ |x| x.name.eql?('E 104') }
|
762
|
+
|
763
|
+
specify { expect(e104.name).to eq 'E 104' }
|
764
|
+
specify { expect(composition.substances.first.name).to eq 'Gentianae Radix' }
|
765
|
+
end
|
766
|
+
|
767
|
+
context "should return correct composition for containing 'color.: E 160(a)'" do
|
768
|
+
string = 'color.: E 160(a), E 171'
|
769
|
+
composition = ParseComposition.from_string(string)
|
770
|
+
specify { expect(composition.source).to eq string }
|
771
|
+
specify { expect(composition.substances.size).to eq 2 }
|
772
|
+
specify { expect(composition.substances.first.name).to eq 'E 160(a)' }
|
773
|
+
specify { expect(composition.substances.last.name).to eq 'E 171' }
|
774
|
+
end
|
775
|
+
|
776
|
+
|
777
|
+
if RunMostImportantParserTests
|
778
|
+
|
779
|
+
context "should parse a Praeparatio with a label/galenic form?" do
|
780
|
+
string = "Praeparatio cryodesiccata: pollinis allergeni extractum 25'000 U.: urtica dioica"
|
781
|
+
composition = ParseComposition.from_string(string)
|
782
|
+
substance = composition.substances.first
|
783
|
+
# specify { expect(substance.name).to eq 'Urtica Dioica' } # TODO: is this okay?
|
784
|
+
specify { expect(composition.label).to eq 'Praeparatio cryodesiccata:' }
|
785
|
+
end
|
786
|
+
|
787
|
+
context "should return correct substance for equis F(ab')2" do
|
788
|
+
string = "viperis antitoxinum equis F(ab')2"
|
789
|
+
composition = ParseComposition.from_string(string)
|
790
|
+
substance = composition.substances.first
|
791
|
+
specify { expect(substance.name).to eq "Viperis Antitoxinum Equis F(ab')" }
|
792
|
+
end
|
793
|
+
|
794
|
+
context "should return correct substance for with two et substances corresp" do
|
795
|
+
string = "viperis antitoxinum equis F(ab')2 corresp. Vipera aspis > 1000 LD50 mus et Vipera berus > 500 LD50 mus et Vipera ammodytes > 1000 LD50 mus"
|
796
|
+
composition = ParseComposition.from_string(string)
|
797
|
+
substance = composition.substances.last
|
798
|
+
specify { expect(substance.name).to eq "Vipera Ammodytes > 1000 Ld50 Mus" }
|
799
|
+
end
|
800
|
+
|
801
|
+
context "should return correct substance for 'pyrazinamidum 500 mg'" do
|
802
|
+
string = "pyrazinamidum 500 mg"
|
803
|
+
CompositionTransformer.clear_substances
|
804
|
+
composition = ParseComposition.from_string(string)
|
805
|
+
substance = composition.substances.first
|
806
|
+
specify { expect(substance.name).to eq 'Pyrazinamidum' }
|
807
|
+
specify { expect(substance.qty).to eq 500.0 }
|
808
|
+
specify { expect(substance.unit).to eq 'mg' }
|
809
|
+
end
|
810
|
+
|
811
|
+
context "should return correct substance for given with et and corresp. (IKSNR 11879)" do
|
812
|
+
string = "calcii lactas pentahydricus 25 mg et calcii hydrogenophosphas anhydricus 300 mg corresp. calcium 100 mg"
|
813
|
+
|
814
|
+
composition = ParseComposition.from_string(string)
|
815
|
+
specify { expect(composition.substances.size).to eq 2 }
|
816
|
+
calcii = composition.substances.find{ |x| /calcii/i.match(x.name) }
|
817
|
+
pentahydricus = composition.substances.find{ |x| /pentahydricus/i.match(x.name) }
|
818
|
+
anhydricus = composition.substances.find{ |x| /anhydricus/i.match(x.name) }
|
819
|
+
specify { expect(pentahydricus.name).to eq 'Calcii Lactas Pentahydricus' }
|
820
|
+
specify { expect(pentahydricus.qty).to eq 25.0}
|
821
|
+
specify { expect(pentahydricus.unit).to eq 'mg' }
|
822
|
+
specify { expect(anhydricus.name).to eq 'Calcii Hydrogenophosphas Anhydricus' }
|
823
|
+
specify { expect(anhydricus.qty).to eq 300.0 }
|
824
|
+
specify { expect(anhydricus.unit).to eq 'mg' }
|
825
|
+
specify { expect(anhydricus.chemical_substance.name).to eq 'Calcium' }
|
826
|
+
specify { expect(anhydricus.chemical_substance.qty).to eq 100.0 }
|
827
|
+
specify { expect(anhydricus.chemical_substance.unit).to eq 'mg' }
|
828
|
+
end
|
829
|
+
|
830
|
+
context "should return correct substances for Nutriflex IKSNR 42847" do
|
831
|
+
string = "I) Glucoselösung: glucosum anhydricum 240 g ut glucosum monohydricum, calcii chloridum dihydricum 600 mg, acidum citricum monohydricum, aqua ad iniectabilia q.s. ad solutionem pro 500 ml.
|
832
|
+
.
|
833
|
+
II) Aminosäurelösung: aminoacida: isoleucinum 4.11 g, leucinum 5.48 g, lysinum anhydricum 3.98 g ut lysinum monohydricum, methioninum 3.42 g, phenylalaninum 6.15 g, threoninum 3.18 g, tryptophanum 1 g, valinum 4.54 g, argininum 4.73 g, histidinum 2.19 g ut histidini hydrochloridum monohydricum, alaninum 8.49 g, acidum asparticum 2.63 g, acidum glutamicum 6.14 g, glycinum 2.89 g, prolinum 5.95 g, serinum 5.25 g, mineralia: magnesii acetas tetrahydricus 1.08 g, natrii acetas trihydricus 1.63 g, kalii dihydrogenophosphas 2 g, kalii hydroxidum 620 mg, natrii hydroxidum 1.14 g, acidum citricum monohydricum, aqua ad iniectabilia q.s. ad solutionem pro 500 ml.
|
834
|
+
.
|
835
|
+
I) et II) corresp.: aminoacida 70 g, nitrogenia 10 g, natrium 40.5 mmol, kalium 25.7 mmol, calcium 4.1 mmol, magnesium 5 mmol, chloridum 49.5 mmol, phosphas 14.7 mmol, acetas 22 mmol, in solutione recenter reconstituta 1000 ml.
|
836
|
+
Corresp. 5190 kJ pro 1 l."
|
837
|
+
line_1 = "I) Glucoselösung: glucosum anhydricum 240 g ut glucosum monohydricum, calcii chloridum dihydricum 600 mg, acidum citricum monohydricum, aqua ad iniectabilia q.s. ad solutionem pro 500 ml."
|
838
|
+
line_2 = "."
|
839
|
+
line_3 = "II) Aminosäurelösung: aminoacida: isoleucinum 4.11 g, leucinum 5.48 g, lysinum anhydricum 3.98 g ut lysinum monohydricum, methioninum 3.42 g, phenylalaninum 6.15 g, threoninum 3.18 g, tryptophanum 1 g, valinum 4.54 g, argininum 4.73 g, histidinum 2.19 g ut histidini hydrochloridum monohydricum, alaninum 8.49 g, acidum asparticum 2.63 g, acidum glutamicum 6.14 g, glycinum 2.89 g, prolinum 5.95 g, serinum 5.25 g, mineralia: magnesii acetas tetrahydricus 1.08 g, natrii acetas trihydricus 1.63 g, kalii dihydrogenophosphas 2 g, kalii hydroxidum 620 mg, natrii hydroxidum 1.14 g, acidum citricum monohydricum, aqua ad iniectabilia q.s. ad solutionem pro 500 ml."
|
840
|
+
line_4 = "."
|
841
|
+
line_5 = "I) et II) corresp.: aminoacida 70 g, nitrogenia 10 g, natrium 40.5 mmol, kalium 25.7 mmol, calcium 4.1 mmol, magnesium 5 mmol, chloridum 49.5 mmol, phosphas 14.7 mmol, acetas 22 mmol, in solutione recenter reconstituta 1000 ml."
|
842
|
+
line_6 = "Corresp. 5190 kJ pro 1 l."
|
843
|
+
tst = 'glucosum anhydricum 240 g ut glucosum monohydricum, calcii chloridum dihydricum 600 mg, acidum citricum monohydricum'
|
844
|
+
tst2 = 'glucosum anhydricum 240 g ut glucosum monohydricum, calcii chloridum dihydricum 600 mg'
|
845
|
+
tst_ut = 'glucosum anhydricum 240 g ut glucosum monohydricum'
|
846
|
+
composition = ParseComposition.from_string(line_2)
|
847
|
+
line_3 = "II) Aminosäurelösung: aminoacida: isoleucinum 4.11 g, leucinum 5.48 g, lysinum anhydricum 3.98 g ut lysinum monohydricum, methioninum 3.42 g, phenylalaninum 6.15 g, threoninum 3.18 g, tryptophanum 1 g, valinum 4.54 g, argininum 4.73 g, histidinum 2.19 g ut histidini hydrochloridum monohydricum, alaninum 8.49 g, acidum asparticum 2.63 g, acidum glutamicum 6.14 g, glycinum 2.89 g, prolinum 5.95 g, serinum 5.25 g, mineralia: magnesii acetas tetrahydricus 1.08 g, natrii acetas trihydricus 1.63 g, kalii dihydrogenophosphas 2 g, kalii hydroxidum 620 mg, natrii hydroxidum 1.14 g, acidum citricum monohydricum, aqua ad iniectabilia q.s. ad solutionem pro 500 ml."
|
848
|
+
line_3 = "II) Aminosäurelösung: aminoacida: isoleucinum 4.11 g, leucinum 5.48 g"
|
849
|
+
line_3 = "aminoacida: isoleucinum 4.11 g, leucinum 5.48 g"
|
850
|
+
composition = ParseComposition.from_string(line_3)
|
851
|
+
composition = ParseComposition.from_string(line_1)
|
852
|
+
|
853
|
+
composition = ParseComposition.from_string(line_1)
|
854
|
+
specify { expect(composition.substances.size).to eq 3}
|
855
|
+
specify { expect(composition.label).to eq 'I' }
|
856
|
+
specify { expect(composition.label_description).to eq 'Glucoselösung' }
|
857
|
+
dihydricum = composition.substances.find{ |x| /dihydricum/i.match(x.name) }
|
858
|
+
monohydricum = composition.substances.find{ |x| /monohydricum/i.match(x.name) }
|
859
|
+
|
860
|
+
specify { expect(dihydricum.name).to eq 'Calcii Chloridum Dihydricum' }
|
861
|
+
specify { expect(dihydricum.chemical_substance).to eq nil }
|
862
|
+
specify { expect(dihydricum.qty).to eq 600.0}
|
863
|
+
specify { expect(dihydricum.unit).to eq 'mg/500 ml' }
|
864
|
+
|
865
|
+
specify { expect(monohydricum.name).to eq 'Acidum Citricum Monohydricum' }
|
866
|
+
specify { expect(monohydricum.chemical_substance).to eq nil }
|
867
|
+
specify { expect(monohydricum.cdose).to eq nil }
|
868
|
+
specify { expect(monohydricum.qty).to eq nil}
|
869
|
+
specify { expect(monohydricum.unit).to eq nil }
|
870
|
+
end
|
871
|
+
|
872
|
+
context "should return correct substance for 9,11-linolicum " do
|
873
|
+
substance = nil; composition = nil
|
874
|
+
[ "9,11-linolicum",
|
875
|
+
"9,11-linolicum 3.25 mg"
|
876
|
+
].each {
|
877
|
+
|string|
|
878
|
+
composition = ParseComposition.from_string(string)
|
879
|
+
substance = composition.substances.first
|
880
|
+
specify { expect(substance.name).to eq '9,11-linolicum' }
|
881
|
+
specify { expect(substance.chemical_substance).to eq nil }
|
882
|
+
CompositionTransformer.clear_substances
|
883
|
+
composition = ParseComposition.from_string(string)
|
884
|
+
}
|
885
|
+
|
886
|
+
specify { expect(substance.qty).to eq 3.25}
|
887
|
+
specify { expect(substance.unit).to eq 'mg' }
|
888
|
+
end
|
889
|
+
|
890
|
+
context "should return correct substance ut (IKSNR 44744)" do
|
891
|
+
string = "zuclopenthixolum 2 mg ut zuclopenthixoli dihydrochloridum, excipiens pro compresso obducto."
|
892
|
+
composition = ParseComposition.from_string(string)
|
893
|
+
specify { expect(composition.substances.size).to eq ExcipiensIs_a_Substance ? 2 : 1}
|
894
|
+
specify { expect(composition.substances.first.name).to eq 'Zuclopenthixolum' }
|
895
|
+
specify { expect(composition.substances.first.qty).to eq 2.0}
|
896
|
+
specify { expect(composition.substances.first.salts.size).to eq 1}
|
897
|
+
if composition.substances.first
|
898
|
+
salt = composition.substances.first.salts.first
|
899
|
+
specify { expect(salt.name).to eq 'Zuclopenthixoli Dihydrochloridum' }
|
900
|
+
specify { expect(salt.qty).to eq nil}
|
901
|
+
specify { expect(salt.unit).to eq nil }
|
902
|
+
end
|
903
|
+
end
|
904
|
+
|
905
|
+
context "should return correct substance for given with et (IKSNR 11879)" do
|
906
|
+
string = "calcii lactas pentahydricus 25 mg et calcii hydrogenophosphas anhydricus 300 mg"
|
907
|
+
composition = ParseComposition.from_string(string)
|
908
|
+
specify { expect(composition.substances.size).to eq 2 }
|
909
|
+
pentahydricus = composition.substances.find{ |x| /pentahydricus/i.match(x.name) }
|
910
|
+
anhydricus = composition.substances.find{ |x| /anhydricus/i.match(x.name) }
|
911
|
+
specify { expect(pentahydricus.name).to eq 'Calcii Lactas Pentahydricus' }
|
912
|
+
specify { expect(pentahydricus.qty).to eq 25.0}
|
913
|
+
specify { expect(pentahydricus.unit).to eq 'mg' }
|
914
|
+
specify { expect(anhydricus.name).to eq 'Calcii Hydrogenophosphas Anhydricus' }
|
915
|
+
specify { expect(anhydricus.qty).to eq 300.0 }
|
916
|
+
specify { expect(anhydricus.unit).to eq 'mg' }
|
917
|
+
end
|
918
|
+
|
919
|
+
context "should return correct substance for 'Xenonum(133-xe) 74 -740 Mb'" do
|
920
|
+
string = "Xenonum(133-Xe) 74 -740 MBq"
|
921
|
+
composition = ParseComposition.from_string(string)
|
922
|
+
substance = composition.substances.first
|
923
|
+
specify { expect(substance.name).to eq 'Xenonum(133-xe)' }
|
924
|
+
specify { expect(substance.qty).to eq '74-740' }
|
925
|
+
specify { expect(substance.unit).to eq 'MBq' }
|
926
|
+
end
|
927
|
+
|
928
|
+
context "should return correct substance for 'pyrazinamidum'" do
|
929
|
+
string = "pyrazinamidum"
|
930
|
+
composition = ParseComposition.from_string(string)
|
931
|
+
substance = composition.substances.first
|
932
|
+
specify { expect(substance.name).to eq 'Pyrazinamidum' }
|
933
|
+
specify { expect(substance.qty).to eq nil }
|
934
|
+
specify { expect(substance.unit).to eq nil }
|
935
|
+
end
|
936
|
+
|
937
|
+
context "should return correct substance for 'E 120'" do
|
938
|
+
string = "E 120"
|
939
|
+
composition = ParseComposition.from_string(string)
|
940
|
+
substance = composition.substances.first
|
941
|
+
specify { expect(substance.name).to eq string }
|
942
|
+
specify { expect(substance.qty).to eq nil }
|
943
|
+
specify { expect(substance.unit).to eq nil }
|
944
|
+
end
|
945
|
+
|
946
|
+
context "should return correct substance for 'retinoli palmitas 7900 U.I.'" do
|
947
|
+
string = "retinoli palmitas 7900 U.I."
|
948
|
+
composition = ParseComposition.from_string(string)
|
949
|
+
substance = composition.substances.first
|
950
|
+
specify { expect(substance.name).to eq 'Retinoli Palmitas' }
|
951
|
+
specify { expect(substance.qty).to eq 7900.0}
|
952
|
+
specify { expect(substance.unit).to eq 'U.I.' }
|
953
|
+
end
|
954
|
+
|
955
|
+
context "should return correct substance for 'toxoidum pertussis 8 µg'" do
|
956
|
+
string = "toxoidum pertussis 8 µg"
|
957
|
+
composition = ParseComposition.from_string(string)
|
958
|
+
substance = composition.substances.first
|
959
|
+
specify { expect(substance.name).to eq 'Toxoidum Pertussis' }
|
960
|
+
specify { expect(substance.qty).to eq 8.0}
|
961
|
+
specify { expect(substance.unit).to eq 'µg' }
|
962
|
+
end
|
963
|
+
|
964
|
+
end
|
965
|
+
|
966
|
+
context "should return correct substance Rote Filmtablett 54819 Beriplast" do
|
967
|
+
string = "A) Rote Filmtablette: estradiolum 1 mg ut estradiolum hemihydricum, excipiens pro compresso obducto"
|
968
|
+
string = "estradiolum 1 mg ut estradiolum hemihydricum, excipiens pro compresso obducto"
|
969
|
+
composition = ParseComposition.from_string(string)
|
970
|
+
substance = composition.substances.first
|
971
|
+
specify { expect(composition.substances.size).to eq 1 }
|
972
|
+
# specify { expect(composition.substances.last.name).to eq 'Obducto' }
|
973
|
+
specify { expect(substance.name).to eq 'Estradiolum' }
|
974
|
+
specify { expect(composition.substances.first.salts.first.name).to eq 'Estradiolum Hemihydricum' }
|
975
|
+
specify { expect(substance.cdose.to_s).to eq "" }
|
976
|
+
specify { expect(substance.qty).to eq 1.0}
|
977
|
+
specify { expect(substance.unit).to eq 'mg' }
|
978
|
+
end
|
979
|
+
|
980
|
+
context "should return correct composition for containing ut IKSNR 613" do
|
981
|
+
string = 'aluminium ut aluminii hydroxidum hydricum ad adsorptionem'
|
982
|
+
composition = ParseComposition.from_string(string)
|
983
|
+
specify { expect(composition.source).to eq string }
|
984
|
+
specify { expect(composition.label).to eq nil }
|
985
|
+
specify { expect(composition.substances.size).to eq 1 }
|
986
|
+
specify { expect(composition.substances.first.name).to eq 'Aluminium' }
|
987
|
+
specify { expect(composition.substances.first.salts.first.name).to eq 'Aluminii Hydroxidum Hydricum Ad Adsorptionem' }
|
988
|
+
end
|
989
|
+
|
990
|
+
context "should return correct substance for 'toxoidum pertussis 25 µg et haemagglutininum filamentosum 25 µg'" do
|
991
|
+
string = "toxoidum pertussis 25 µg et haemagglutininum filamentosum 15 µg"
|
992
|
+
composition = ParseComposition.from_string(string)
|
993
|
+
toxoidum = composition.substances.first
|
994
|
+
specify { expect(toxoidum.name).to eq 'Toxoidum Pertussis' }
|
995
|
+
specify { expect(toxoidum.qty).to eq 25.0}
|
996
|
+
specify { expect(toxoidum.unit).to eq 'µg' }
|
997
|
+
specify { expect(toxoidum.chemical_substance).to eq nil }
|
998
|
+
haemagglutininum = composition.substances.last
|
999
|
+
specify { expect(haemagglutininum.name).to eq 'Haemagglutininum Filamentosum' }
|
1000
|
+
specify { expect(haemagglutininum.qty).to eq 15.0}
|
1001
|
+
specify { expect(haemagglutininum.unit).to eq 'µg' }
|
1002
|
+
end
|
1003
|
+
|
1004
|
+
if RunSpecificTests
|
1005
|
+
context "should return correct composition for containing parenthesis in substance name abd 40 U. (e.g IKSNR 613)" do
|
1006
|
+
string = 'virus poliomyelitis typus 1 inactivatum (D-Antigen) 40 U.'
|
1007
|
+
composition = ParseComposition.from_string(string)
|
1008
|
+
specify { expect(composition.source).to eq string }
|
1009
|
+
specify { expect(composition.substances.size).to eq 1 }
|
1010
|
+
specify { expect(composition.substances.first.name).to eq 'Virus Poliomyelitis Typus 1 Inactivatum (d-antigen)' }
|
1011
|
+
end
|
1012
|
+
|
1013
|
+
context "should return correct composition for containing parenthesis in substance name (e.g IKSNR 613)" do
|
1014
|
+
string = 'virus poliomyelitis typus inactivatum (D-Antigen)'
|
1015
|
+
string = 'virus poliomyelitis typus 1 inactivatum (d-antigen)'
|
1016
|
+
composition = ParseComposition.from_string(string)
|
1017
|
+
specify { expect(composition.source).to eq string }
|
1018
|
+
specify { expect(composition.substances.size).to eq 1 }
|
1019
|
+
specify { expect(composition.substances.first.name).to eq 'Virus Poliomyelitis Typus 1 Inactivatum (d-antigen)' }
|
1020
|
+
end
|
1021
|
+
|
1022
|
+
context "should return correct composition for containing residui (e.g IKSNR 613)" do
|
1023
|
+
string = 'residui: neomycinum, streptomycinum'
|
1024
|
+
composition = ParseComposition.from_string(string)
|
1025
|
+
specify { expect(composition.source).to eq string }
|
1026
|
+
specify { expect(composition.substances.size).to eq 2 }
|
1027
|
+
specify { expect(composition.substances.first.more_info).to eq 'residui' }
|
1028
|
+
specify { expect(composition.substances.first.name).to eq 'Neomycinum' }
|
1029
|
+
specify { expect(composition.substances.last.name).to eq 'Streptomycinum' }
|
1030
|
+
end
|
1031
|
+
|
1032
|
+
context "should return correct composition for 'conserv.: E 217, E 219' IKSNR 613" do
|
1033
|
+
# string = 'I) DTPa-IPV-Komponente (Suspension): toxoidum diphtheriae 30 U.I., toxoidum tetani 40 U.I., toxoidum pertussis 25 µg et haemagglutininum filamentosum 25 µg, virus poliomyelitis typus 1 inactivatum (D-Antigen) 40 U., virus poliomyelitis typus 2 inactivatum (D-Antigen) 8 U., virus poliomyelitis typus 3 inactivatum (D-Antigen) 32 U., aluminium ut aluminii hydroxidum hydricum ad adsorptionem, formaldehydum 10 µg, conserv.: phenoxyethanolum 2.5 µl, residui: neomycinum, streptomycinum, polymyxini B sulfas, medium199, aqua q.s. ad suspensionem pro 0.5 ml.'
|
1034
|
+
string =
|
1035
|
+
'I) DTPa-IPV-Komponente (Suspension): toxoidum diphtheriae 30 U.I., toxoidum tetani 40 U.I., toxoidum pertussis 25 µg et haemagglutininum filamentosum 25 µg, virus poliomyelitis typus 1 inactivatum (D-Antigen) 40 U., virus poliomyelitis typus 2 inactivatum (D-Antigen) 8 U., virus poliomyelitis typus 3 inactivatum (D-Antigen) 32 U., aluminium ut aluminii hydroxidum hydricum ad adsorptionem, formaldehydum 10 µg, conserv.: phenoxyethanolum 2.5 µl, residui: neomycinum, streptomycinum, polymyxini B sulfas, medium199, aqua q.s. ad suspensionem pro 0.5 ml.'
|
1036
|
+
composition = ParseComposition.from_string(string)
|
1037
|
+
specify { expect(composition.source).to eq string }
|
1038
|
+
specify { expect(composition.label).to eq 'I' }
|
1039
|
+
end
|
1040
|
+
|
1041
|
+
context "should return correct composition for 'conserv.: E 217, E 219'" do
|
1042
|
+
string = 'conserv.: E 217, E 219'
|
1043
|
+
composition = ParseComposition.from_string(string)
|
1044
|
+
specify { expect(composition.source).to eq string }
|
1045
|
+
specify { expect(composition.label).to eq nil }
|
1046
|
+
end
|
1047
|
+
|
1048
|
+
context "should parse more complicated example" do
|
1049
|
+
string =
|
1050
|
+
"I) DTPa-IPV-Komponente (Suspension): toxoidum diphtheriae 30 U.I., toxoidum pertussis 25 µg et haemagglutininum filamentosum 25 µg"
|
1051
|
+
composition = ParseComposition.from_string(string)
|
1052
|
+
specify { expect(composition.source).to eq string }
|
1053
|
+
|
1054
|
+
specify { expect(composition.label).to eq 'I' }
|
1055
|
+
specify { expect(composition.label_description).to eq 'DTPa-IPV-Komponente (Suspension)' }
|
1056
|
+
|
1057
|
+
specify { expect(composition.galenic_form).to eq nil }
|
1058
|
+
specify { expect(composition.route_of_administration).to eq nil }
|
1059
|
+
|
1060
|
+
toxoidum = composition.substances.find{|x| /toxoidum diphther/i.match(x.name)}
|
1061
|
+
specify { expect(toxoidum.name).to eq 'Toxoidum Diphtheriae' }
|
1062
|
+
specify { expect(toxoidum.qty).to eq 30 }
|
1063
|
+
specify { expect(toxoidum.unit).to eq 'U.I.' }
|
1064
|
+
|
1065
|
+
haema = composition.substances.find{|x| /Haemagglutininum/i.match(x.name)}
|
1066
|
+
specify { expect(haema.name).to eq 'Haemagglutininum Filamentosum' }
|
1067
|
+
specify { expect(haema.qty).to eq 25 }
|
1068
|
+
specify { expect(haema.unit).to eq 'µg' }
|
1069
|
+
end
|
1070
|
+
|
1071
|
+
context "should return correct composition for 'minoxidilum'" do
|
1072
|
+
string = 'minoxidilum 2.5 mg, pyrazinamidum 500 mg'
|
1073
|
+
composition = ParseComposition.from_string(string)
|
1074
|
+
specify { expect(composition.source).to eq string }
|
1075
|
+
specify { expect(composition.label).to eq nil }
|
1076
|
+
specify { expect(composition.label_description).to eq nil }
|
1077
|
+
specify { expect(composition.galenic_form).to eq nil }
|
1078
|
+
specify { expect(composition.route_of_administration).to eq nil }
|
1079
|
+
substance = composition.substances.first
|
1080
|
+
specify { expect(substance.name).to eq 'Minoxidilum' }
|
1081
|
+
specify { expect(substance.qty).to eq 2.5 }
|
1082
|
+
specify { expect(substance.unit).to eq 'mg' }
|
1083
|
+
end
|
1084
|
+
|
1085
|
+
context "should return correct composition for 'terra'" do
|
1086
|
+
string = 'terra'
|
1087
|
+
composition = ParseComposition.from_string(string)
|
1088
|
+
specify { expect(composition.source).to eq string }
|
1089
|
+
specify { expect(composition.label).to eq nil }
|
1090
|
+
specify { expect(composition.label_description).to eq nil }
|
1091
|
+
specify { expect(composition.galenic_form).to eq nil }
|
1092
|
+
specify { expect(composition.route_of_administration).to eq nil }
|
1093
|
+
specify { expect( composition.substances.first.name).to eq "Terra" }
|
1094
|
+
end
|
1095
|
+
|
1096
|
+
context "should return correct composition for 'terra silicea spec..'" do
|
1097
|
+
string = 'terra silicea spec. 810 mg, excipiens pro compresso'
|
1098
|
+
composition = ParseComposition.from_string(string)
|
1099
|
+
specify { expect(composition.source).to eq string}
|
1100
|
+
specify { expect(composition.label).to eq nil }
|
1101
|
+
specify { expect(composition.label_description).to eq nil }
|
1102
|
+
specify { expect(composition.galenic_form).to eq nil }
|
1103
|
+
specify { expect(composition.route_of_administration).to eq nil }
|
1104
|
+
specify { expect( composition.substances.first.name).to eq "Terra Silicea Spec." }
|
1105
|
+
end
|
1106
|
+
|
1107
|
+
context "should return correct composition for 'minoxidilum'" do
|
1108
|
+
string = 'minoxidilum 2.5 mg'
|
1109
|
+
composition = ParseComposition.from_string(string)
|
1110
|
+
specify { expect(composition.source).to eq string }
|
1111
|
+
specify { expect(composition.label).to eq nil }
|
1112
|
+
specify { expect(composition.label_description).to eq nil }
|
1113
|
+
specify { expect(composition.galenic_form).to eq nil }
|
1114
|
+
specify { expect(composition.route_of_administration).to eq nil }
|
1115
|
+
substance = composition.substances.first
|
1116
|
+
specify { expect(substance.name).to eq 'Minoxidilum' }
|
1117
|
+
specify { expect(substance.qty).to eq 2.5 }
|
1118
|
+
specify { expect(substance.unit).to eq 'mg' }
|
1119
|
+
end
|
1120
|
+
|
1121
|
+
context "should return correct composition for 'minoxidilum'" do
|
1122
|
+
string = 'minoxidilum'
|
1123
|
+
composition = ParseComposition.from_string(string)
|
1124
|
+
specify { expect(composition.source).to eq string }
|
1125
|
+
specify { expect(composition.label).to eq nil }
|
1126
|
+
specify { expect(composition.label_description).to eq nil }
|
1127
|
+
specify { expect(composition.galenic_form).to eq nil }
|
1128
|
+
specify { expect(composition.route_of_administration).to eq nil }
|
1129
|
+
substance = composition.substances.first
|
1130
|
+
specify { expect(substance.name).to eq 'Minoxidilum' }
|
1131
|
+
specify { expect(substance.qty).to eq nil }
|
1132
|
+
specify { expect(substance.unit).to eq nil }
|
1133
|
+
end
|
1134
|
+
|
1135
|
+
context "should return correct composition for 'minoxidilum excipiens'" do
|
1136
|
+
string = 'minoxidilum 2.5 mg, excipiens pro compresso.'
|
1137
|
+
composition = ParseComposition.from_string(string)
|
1138
|
+
specify { expect(composition.source).to eq string }
|
1139
|
+
specify { expect(composition.label).to eq nil }
|
1140
|
+
specify { expect(composition.label_description).to eq nil }
|
1141
|
+
specify { expect(composition.galenic_form).to eq nil }
|
1142
|
+
specify { expect(composition.route_of_administration).to eq nil }
|
1143
|
+
|
1144
|
+
substance = composition.substances.first
|
1145
|
+
specify { expect(substance.name).to eq 'Minoxidilum' }
|
1146
|
+
specify { expect(substance.qty).to eq 2.5 }
|
1147
|
+
specify { expect(substance.unit).to eq 'mg' }
|
1148
|
+
skip 'what is the correct name for excipiens?'# { expect(composition.substances.last.name).to eq 'Excipiens Pro Compresso' }
|
1149
|
+
end
|
1150
|
+
|
1151
|
+
context 'find correct result compositions for nutriflex' do
|
1152
|
+
line_1 = 'I) Glucoselösung: glucosum anhydricum 150 g ut glucosum monohydricum, natrii dihydrogenophosphas dihydricus 2.34 g, zinci acetas dihydricus 6.58 mg, aqua ad iniectabilia q.s. ad solutionem pro 500 ml.'
|
1153
|
+
line_2 = 'II) Fettemulsion: sojae oleum 25 g, triglycerida saturata media 25 g, lecithinum ex ovo 3 g, glycerolum, natrii oleas, aqua q.s. ad emulsionem pro 250 ml.'
|
1154
|
+
line_3 = 'III) Aminosäurenlösung: isoleucinum 2.34 g, leucinum 3.13 g, lysinum anhydricum 2.26 g ut lysini hydrochloridum, methioninum 1.96 g, aqua ad iniectabilia q.s. ad solutionem pro 400 ml.'
|
1155
|
+
line_4 = 'I) et II) et III) corresp.: aminoacida 32 g/l, acetas 32 mmol/l, acidum citricum monohydricum, in emulsione recenter mixta 1250 ml.'
|
1156
|
+
line_5 = 'Corresp. 4000 kJ.'
|
1157
|
+
text = "#{line_1}\n#{line_2}\n#{line_3}\n#{line_4}\n#{line_5}"
|
1158
|
+
compositions = ParseUtil.parse_compositions(text, 'glucosum anhydricum, zinci acetas dihydricus, isoleucinum, leucinum')
|
1159
|
+
specify { expect(compositions.first.substances.first.name).to eq 'Glucosum Anhydricum'}
|
1160
|
+
specify { expect(compositions.first.substances.first.salts.first.name).to eq 'Glucosum Monohydricum'}
|
1161
|
+
specify { expect(compositions.size).to eq 5}
|
1162
|
+
specify { expect(compositions.first.substances.first.qty.to_f).to eq 150.0}
|
1163
|
+
specify { expect(compositions.first.substances.first.unit).to eq 'g/500 ml'}
|
1164
|
+
|
1165
|
+
specify { expect(compositions[0].source).to eq line_1}
|
1166
|
+
specify { expect(compositions[0].label).to eq 'I'}
|
1167
|
+
specify { expect(compositions[0].label_description).to eq 'Glucoselösung'}
|
1168
|
+
specify { expect(compositions[1].label).to eq 'II' }
|
1169
|
+
specify { expect(compositions[2].label).to eq 'III' }
|
1170
|
+
glucosum = compositions.first.substances.first
|
1171
|
+
specify { expect(glucosum.name).to eq 'Glucosum Anhydricum' }
|
1172
|
+
specify { expect(glucosum.qty.to_f).to eq 150.0}
|
1173
|
+
specify { expect(glucosum.unit).to eq 'g/500 ml'}
|
1174
|
+
specify { expect(compositions[0].substances.size).to eq ExcipiensIs_a_Substance ? 4 : 3 }
|
1175
|
+
specify { expect(compositions[1].substances.size).to eq ExcipiensIs_a_Substance ? 6 : 5 } # should have glycerolum, natrii oleas, aqua
|
1176
|
+
specify { expect(compositions[2].substances.size).to eq ExcipiensIs_a_Substance ? 5 : 4 }
|
1177
|
+
specify { expect(compositions[1].source).to eq line_2}
|
1178
|
+
specify { expect(compositions[2].source).to eq line_3}
|
1179
|
+
specify { expect(compositions[3].source).to eq line_4}
|
1180
|
+
specify { expect(compositions[3].corresp).to eq line_4.sub(/\.$/, '') }
|
1181
|
+
specify { expect(compositions[4].source).to eq line_5}
|
1182
|
+
specify { expect(compositions[4].corresp).to eq '4000 kJ'}
|
1183
|
+
|
1184
|
+
# from II)
|
1185
|
+
if compositions and compositions[1] and compositions[1].substances
|
1186
|
+
lecithinum = compositions[1].substances.find{ |x| x.name.match(/lecithinum/i) }
|
1187
|
+
specify { expect(lecithinum).not_to eq nil}
|
1188
|
+
if lecithinum
|
1189
|
+
specify { expect(lecithinum.name).to eq 'Lecithinum Ex Ovo' }
|
1190
|
+
specify { expect(lecithinum.qty.to_f).to eq 3.0}
|
1191
|
+
specify { expect(lecithinum.unit).to eq 'g/250 ml'}
|
1192
|
+
end
|
1193
|
+
|
1194
|
+
# From III
|
1195
|
+
leucinum = compositions[2].substances.find{ |x| x.name.eql?('Leucinum') }
|
1196
|
+
specify { expect(leucinum).not_to eq nil}
|
1197
|
+
if leucinum
|
1198
|
+
specify { expect(leucinum.name).to eq 'Leucinum' }
|
1199
|
+
specify { expect(leucinum.qty.to_f).to eq 3.13}
|
1200
|
+
specify { expect(leucinum.unit).to eq 'g/400 ml'}
|
1201
|
+
end
|
1202
|
+
leucinum_I = compositions[0].substances.find{ |x| x.name.eql?('Leucinum') }
|
1203
|
+
specify { expect(leucinum_I).to eq nil}
|
1204
|
+
leucinum_II = compositions[1].substances.find{ |x| x.name.eql?('Leucinum') }
|
1205
|
+
specify { expect(leucinum_II).to eq nil}
|
1206
|
+
# aqua = compositions[2].substances.find{ |x| /aqua ad/i.match(x.name) }
|
1207
|
+
# specify { expect(aqua.name).to eq "Aqua Ad Iniectabilia Q.s. Ad Solutionem Pro"}
|
1208
|
+
end
|
1209
|
+
|
1210
|
+
end
|
1211
|
+
|
1212
|
+
end
|
1213
|
+
|
1214
|
+
describe ParseUtil::HandleSwissmedicErrors do
|
1215
|
+
context 'should handle fixes' do
|
1216
|
+
replacement = '\1, \2'
|
1217
|
+
pattern_replacement = { /(sulfuris D6\s[^\s]+\smg)\s([^,]+)/ => replacement }
|
1218
|
+
test_string = 'sulfuris D6 2,2 mg hypericum perforatum D2 0,66'
|
1219
|
+
expected = 'sulfuris D6 2,2 mg, hypericum perforatum D2 0,66'
|
1220
|
+
handler = ParseUtil::HandleSwissmedicErrors.new(pattern_replacement )
|
1221
|
+
result = handler.apply_fixes(test_string)
|
1222
|
+
specify { expect(result).to eq expected }
|
1223
|
+
specify { expect(handler.report.size).to eq 2 }
|
1224
|
+
specify { expect(/report/i.match(handler.report[0]).class).to eq MatchData }
|
1225
|
+
specify { expect(handler.report[1].index(replacement).class).to eq Fixnum }
|
1226
|
+
end
|
1227
|
+
|
1228
|
+
context 'should be used when calling ParseComposition' do
|
1229
|
+
replacement = '\1, \2'
|
1230
|
+
test_string = 'sulfuris D6 2,2 mg hypericum perforatum D2 0,66'
|
1231
|
+
report = ParseComposition.reset
|
1232
|
+
composition = ParseComposition.from_string(test_string).clone
|
1233
|
+
report = ParseComposition.report
|
1234
|
+
specify { expect(composition.substances.size).to eq 2 }
|
1235
|
+
specify { expect(composition.substances.first.name).to eq 'Sulfuris D6' }
|
1236
|
+
specify { expect(composition.substances.last.name).to eq 'Hypericum Perforatum D2' }
|
1237
|
+
specify { expect(/report/i.match(report[0]).class).to eq MatchData }
|
1238
|
+
specify { expect(report[1].index(replacement).class).to eq Fixnum }
|
1239
|
+
end
|
1240
|
+
|
1241
|
+
end
|
1242
|
+
end if RunSpecificTests
|
1243
|
+
|
1244
|
+
describe ParseComposition do
|
1245
|
+
context "should parse a complex composition" do
|
1246
|
+
start_time = Time.now
|
1247
|
+
specify { expect( File.exists?(AllCompositionLines)).to eq true }
|
1248
|
+
inhalt = IO.readlines(AllCompositionLines)
|
1249
|
+
nr = 0
|
1250
|
+
@nrErrors = 0
|
1251
|
+
inhalt.each{
|
1252
|
+
|line|
|
1253
|
+
nr += 1
|
1254
|
+
next if line.length < 5
|
1255
|
+
puts "#{File.basename(AllCompositionLines)}:#{nr} #{@nrErrors} errors: #{line}" if VERBOSE_MESSAGES
|
1256
|
+
begin
|
1257
|
+
composition = ParseComposition.from_string line
|
1258
|
+
rescue Parslet::ParseFailed
|
1259
|
+
@nrErrors += 1
|
1260
|
+
puts "#{File.basename(AllCompositionLines)}:#{nr} parse_error #{@nrErrors} in: #{line}"
|
1261
|
+
# binding.pry
|
1262
|
+
# binding.pry if nr > 300
|
1263
|
+
end
|
1264
|
+
}
|
1265
|
+
at_exit { puts "Testing whether #{nr} composition lines can be parsed. Found #{@nrErrors} errors in #{(Time.now - start_time).to_i} seconds" }
|
1266
|
+
|
1267
|
+
end if RunAllCompositionsTests
|
1268
|
+
end
|