obo_parser 0.3.4 → 0.3.5

data/test/test_obo_parser.rb

@@ -99,7 +99,6 @@ class Test_Lexer < Test::Unit::TestCase
     assert_equal 2, foo.terms.first.relationships.size 
     assert_equal(['CL:0000272', 'CL:0000610'], foo.terms.first.relationships.collect{|r| r[1]}.sort)
     assert_equal(['is_a', 'is_a'], foo.terms.first.relationships.collect{|r| r[0]}.sort)
-
   end
 
   def test_parse_term
@@ -143,11 +142,8 @@ class Test_Lexer < Test::Unit::TestCase
     assert_equal 'part_of', t.relation
     assert_equal 'CL:0000333', t.related_term
     assert_equal 'Foo', t.comment
-
   end
 
-  
-
   def test_tagvaluepair
     lexer = OboParser::Lexer.new("id: PATO:0000179")
     assert lexer.pop(OboParser::Tokens::TagValuePair)
@@ -221,6 +217,44 @@ class Test_Parser < Test::Unit::TestCase
     assert_equal 2, foo.terms[9].relationships.size
   end
 
+  def test_complex_file_parsing2
+    assert of = File.read(File.expand_path(File.join(File.dirname(__FILE__), '../test/hao.obo')) )
+    foo = parse_obo_file(of)
+    assert_equal 'anatomical entity', foo.terms.first.name.value
+    assert_equal 'ventral mesofurco-profurcal muscle', foo.terms[1].name.value
+
+   #tmp = foo.terms[9].tags_named('synonym')
+   #assert_equal 2, tmp.size
+   #assert_equal 'xylem initial', tmp.first.value
+   #assert_equal 'xylem mother cell', tmp[1].value
+   #assert_equal([], tmp[1].xrefs)
+
+   #assert_equal 2, foo.terms[9].relationships.size
+  end
+
+  def test_complex_file_parsing3
+    assert of = File.read(File.expand_path(File.join(File.dirname(__FILE__), '../test/tgma.obo')) )
+    foo = parse_obo_file(of)
+   # assert_equal 'anatomical entity', foo.terms.first.name.value
+   # assert_equal 'ventral mesofurco-profurcal muscle', foo.terms[1].name.value
+
+   #tmp = foo.terms[9].tags_named('synonym')
+   #assert_equal 2, tmp.size
+   #assert_equal 'xylem initial', tmp.first.value
+   #assert_equal 'xylem mother cell', tmp[1].value
+   #assert_equal([], tmp[1].xrefs)
+
+   #assert_equal 2, foo.terms[9].relationships.size
+  end
+
+  def test_complex_file_parsing4
+   assert of = File.read(File.expand_path(File.join(File.dirname(__FILE__), '../test/go.obo')) )
+   foo = parse_obo_file(of)
+   assert_equal 'hemolymph', foo.terms.first.name.value
+   assert_equal 'hemocyte', foo.terms[1].name.value
+   assert_equal 1, foo.terms.first.relationships.size
+  end
+
   def test_file_completes_without_typedefs
     @of2 = File.read(File.expand_path(File.join(File.dirname(__FILE__), '../test/obo_1.0_test_wo_typedefs.txt')) )
     assert foo = parse_obo_file(@of2)