oasis-etm 0.1.0

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Files changed (52) hide show
  1. checksums.yaml +7 -0
  2. data/.github/workflows/rake.yml +15 -0
  3. data/.github/workflows/release.yml +23 -0
  4. data/.gitignore +13 -0
  5. data/.rspec +3 -0
  6. data/.rubocop.yml +14 -0
  7. data/.rubocop_todo.yml +24 -0
  8. data/CODE_OF_CONDUCT.md +132 -0
  9. data/Gemfile +15 -0
  10. data/README.adoc +152 -0
  11. data/Rakefile +12 -0
  12. data/bin/console +11 -0
  13. data/bin/setup +8 -0
  14. data/lib/oasis/etm/colspec.rb +28 -0
  15. data/lib/oasis/etm/entry.rb +39 -0
  16. data/lib/oasis/etm/row.rb +22 -0
  17. data/lib/oasis/etm/table.rb +31 -0
  18. data/lib/oasis/etm/tbody.rb +20 -0
  19. data/lib/oasis/etm/tcol.rb +28 -0
  20. data/lib/oasis/etm/tgroup.rb +37 -0
  21. data/lib/oasis/etm/thead.rb +20 -0
  22. data/lib/oasis/etm/version.rb +7 -0
  23. data/lib/oasis/etm.rb +13 -0
  24. data/lib/oasis-etm.rb +1 -0
  25. data/oasis-etm.gemspec +35 -0
  26. data/oasis-etm_wrapped.txt +1910 -0
  27. data/sig/oasis/etm.rbs +6 -0
  28. data/spec/fixtures/isosts/isosts_tables.cals.01.xml +16 -0
  29. data/spec/fixtures/isosts/isosts_tables.cals.02.xml +45 -0
  30. data/spec/fixtures/isosts/isosts_tables.cals.03.xml +35 -0
  31. data/spec/fixtures/isosts/isosts_tables.cals.04.xml +34 -0
  32. data/spec/fixtures/isosts/isosts_tables.cals.05.xml +63 -0
  33. data/spec/fixtures/isosts/isosts_tables.cals.06.xml +52 -0
  34. data/spec/fixtures/isosts/isosts_tables.cals.07.xml +33 -0
  35. data/spec/fixtures/isosts/isosts_tables.cals.08.xml +37 -0
  36. data/spec/fixtures/isosts/isosts_tables.cals.09.xml +37 -0
  37. data/spec/fixtures/isosts/isosts_tables.cals.10.xml +44 -0
  38. data/spec/fixtures/isosts/isosts_tables.cals.11.xml +43 -0
  39. data/spec/fixtures/isosts/isosts_tables.cals.12.xml +22 -0
  40. data/spec/fixtures/native/docbook_example.xml +47 -0
  41. data/spec/fixtures/niso-jats/niso-jats-table-wrap.xml +78 -0
  42. data/spec/oasis/etm/colspec_spec.rb +49 -0
  43. data/spec/oasis/etm/entry_spec.rb +103 -0
  44. data/spec/oasis/etm/row_spec.rb +43 -0
  45. data/spec/oasis/etm/table_spec.rb +94 -0
  46. data/spec/oasis/etm/tbody_spec.rb +48 -0
  47. data/spec/oasis/etm/tgroup_spec.rb +97 -0
  48. data/spec/oasis/etm/thead_spec.rb +48 -0
  49. data/spec/oasis/etm_spec.rb +81 -0
  50. data/spec/spec_helper.rb +31 -0
  51. data/spec/support/shared_examples/validation_examples.rb +20 -0
  52. metadata +110 -0
checksums.yaml ADDED
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@@ -0,0 +1,15 @@
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+ # Auto-generated by Cimas: Do not edit it manually!
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+ # See https://github.com/metanorma/cimas
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+ name: rake
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+
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+ on:
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+ push:
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+ branches: [ master, main ]
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+ tags: [ v* ]
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+ pull_request:
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+
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+ jobs:
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+ rake:
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+ uses: metanorma/ci/.github/workflows/generic-rake.yml@main
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+ secrets:
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+ pat_token: ${{ secrets.LUTAML_CI_PAT_TOKEN }}
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+ # Auto-generated by Cimas: Do not edit it manually!
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+ # See https://github.com/metanorma/cimas
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+ name: release
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+
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+ on:
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+ workflow_dispatch:
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+ inputs:
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+ next_version:
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+ description: |
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+ Next release version. Possible values: x.y.z, major, minor, patch or pre|rc|etc
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+ required: true
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+ default: 'skip'
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+ repository_dispatch:
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+ types: [ do-release ]
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+
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+ jobs:
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+ release:
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+ uses: metanorma/ci/.github/workflows/rubygems-release.yml@main
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+ with:
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+ next_version: ${{ github.event.inputs.next_version }}
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+ secrets:
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+ rubygems-api-key: ${{ secrets.LUTAML_CI_RUBYGEMS_API_KEY }}
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+ pat_token: ${{ secrets.LUTAML_CI_PAT_TOKEN }}
data/.gitignore ADDED
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+ .rubocop-https---*
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+
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+ /.bundle/
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+ /.yardoc
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+ /_yardoc/
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+ /coverage/
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+ /doc/
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+ /pkg/
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+ /spec/reports/
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+ /tmp/
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+
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+ # rspec failure tracking
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+ .rspec_status
data/.rspec ADDED
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+ --format documentation
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+ --color
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+ --require spec_helper
data/.rubocop.yml ADDED
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+ inherit_from:
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+ - https://raw.githubusercontent.com/riboseinc/oss-guides/master/ci/rubocop.yml
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+ - .rubocop_todo.yml
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+
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+ require:
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+ - rubocop-performance
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+ - rubocop-rake
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+ - rubocop-rspec
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+
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+ AllCops:
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+ TargetRubyVersion: 3.0
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+ NewCops: enable
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+ Exclude:
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+ - 'vendor/**/*'
data/.rubocop_todo.yml ADDED
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+ # This configuration was generated by
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+ # `rubocop --auto-gen-config`
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+ # on 2024-11-01 07:12:25 UTC using RuboCop version 1.68.0.
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+ # The point is for the user to remove these configuration records
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+ # one by one as the offenses are removed from the code base.
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+ # Note that changes in the inspected code, or installation of new
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+ # versions of RuboCop, may require this file to be generated again.
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+
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+ # Offense count: 2
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+ # This cop supports safe autocorrection (--autocorrect).
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+ # Configuration parameters: Max, AllowHeredoc, AllowURI, URISchemes, IgnoreCopDirectives, AllowedPatterns.
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+ # URISchemes: http, https
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+ Layout/LineLength:
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+ Exclude:
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+ - 'spec/oasis/etm/entry_spec.rb'
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+
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+ # Offense count: 6
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+ # Configuration parameters: CountAsOne.
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+ RSpec/ExampleLength:
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+ Max: 10
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+
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+ # Offense count: 12
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+ RSpec/MultipleExpectations:
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+ Max: 10
@@ -0,0 +1,132 @@
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+ # Contributor Covenant Code of Conduct
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+
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+ ## Our Pledge
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+
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+ We as members, contributors, and leaders pledge to make participation in our
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+ community a harassment-free experience for everyone, regardless of age, body
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+ size, visible or invisible disability, ethnicity, sex characteristics, gender
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+ identity and expression, level of experience, education, socio-economic status,
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+ nationality, personal appearance, race, caste, color, religion, or sexual
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+ identity and orientation.
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+
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+ We pledge to act and interact in ways that contribute to an open, welcoming,
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+ diverse, inclusive, and healthy community.
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+
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+ ## Our Standards
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+ Examples of behavior that contributes to a positive environment for our
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+ community include:
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+ * Demonstrating empathy and kindness toward other people
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+ * Being respectful of differing opinions, viewpoints, and experiences
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+ * Other conduct which could reasonably be considered inappropriate in a
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+ professional setting
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+ ## Enforcement Responsibilities
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+ Community leaders are responsible for clarifying and enforcing our standards of
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+ acceptable behavior and will take appropriate and fair corrective action in
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+ response to any behavior that they deem inappropriate, threatening, offensive,
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+ comments, commits, code, wiki edits, issues, and other contributions that are
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+ not aligned to this Code of Conduct, and will communicate reasons for moderation
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+ Examples of representing our community include using an official email address,
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+ ## Enforcement
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+ ## Enforcement Guidelines
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+ Community leaders will follow these Community Impact Guidelines in determining
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+ the consequences for any action they deem in violation of this Code of Conduct:
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+ ### 1. Correction
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+ **Community Impact**: Use of inappropriate language or other behavior deemed
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+ unprofessional or unwelcome in the community.
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+ **Consequence**: A private, written warning from community leaders, providing
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+ behavior was inappropriate. A public apology may be requested.
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+
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+ ### 2. Warning
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+ **Community Impact**: A violation through a single incident or series of
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+ actions.
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+ **Consequence**: A warning with consequences for continued behavior. No
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+ interaction with the people involved, including unsolicited interaction with
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+ those enforcing the Code of Conduct, for a specified period of time. This
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+ includes avoiding interactions in community spaces as well as external channels
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+ like social media. Violating these terms may lead to a temporary or permanent
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+ ban.
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+
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+ ### 3. Temporary Ban
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+ **Community Impact**: A serious violation of community standards, including
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+ sustained inappropriate behavior.
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+ **Consequence**: A temporary ban from any sort of interaction or public
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+ communication with the community for a specified period of time. No public or
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+ private interaction with the people involved, including unsolicited interaction
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+ with those enforcing the Code of Conduct, is allowed during this period.
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+ Violating these terms may lead to a permanent ban.
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+
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+ ### 4. Permanent Ban
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+
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+ **Community Impact**: Demonstrating a pattern of violation of community
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+ standards, including sustained inappropriate behavior, harassment of an
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+ individual, or aggression toward or disparagement of classes of individuals.
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+ **Consequence**: A permanent ban from any sort of public interaction within the
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+ community.
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+
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+ ## Attribution
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+
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+ This Code of Conduct is adapted from the [Contributor Covenant][homepage],
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+ version 2.1, available at
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+ [https://www.contributor-covenant.org/version/2/1/code_of_conduct.html][v2.1].
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+
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+ Community Impact Guidelines were inspired by
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+ [Mozilla's code of conduct enforcement ladder][Mozilla CoC].
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+
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+ For answers to common questions about this code of conduct, see the FAQ at
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+ [https://www.contributor-covenant.org/faq][FAQ]. Translations are available at
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+ [https://www.contributor-covenant.org/translations][translations].
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+
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+ [homepage]: https://www.contributor-covenant.org
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+ [v2.1]: https://www.contributor-covenant.org/version/2/1/code_of_conduct.html
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+ [Mozilla CoC]: https://github.com/mozilla/diversity
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+ [FAQ]: https://www.contributor-covenant.org/faq
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+ [translations]: https://www.contributor-covenant.org/translations
data/Gemfile ADDED
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+ # frozen_string_literal: true
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+
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+ source "https://rubygems.org"
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+
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+ # Specify your gem's dependencies in oasis-etm.gemspec
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+ gemspec
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+
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+ gem "nokogiri"
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+ gem "rake", "~> 13.0"
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+ gem "rspec", "~> 3.0"
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+ gem "rubocop", "~> 1.21"
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+ gem "rubocop-performance"
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+ gem "rubocop-rake"
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+ gem "rubocop-rspec"
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+ gem "xml-c14n"
data/README.adoc ADDED
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+ = OASIS Exchange Table Model (ETM) Parser
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+ :toc: macro
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+ :toclevels: 3
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+
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+ image:https://img.shields.io/gem/v/oasis-etm.svg[Gem Version, link=https://rubygems.org/gems/oasis-etm]
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+ image:https://github.com/yourusername/oasis-etm/actions/workflows/test.yml/badge.svg[Build Status, link=https://github.com/yourusername/oasis-etm/actions/workflows/test.yml]
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+ image:https://img.shields.io/github/license/yourusername/oasis-etm.svg[License, link=https://github.com/yourusername/oasis-etm/blob/main/LICENSE]
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+
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+ toc::[]
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+
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+ == Purpose
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+
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+ The OASIS ETM format is a simple XML format for representing tables for
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+ exchange. It is used in the DocBook and NISO JATS standards.
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+
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+ This library provides a Ruby implementation of the
17
+ https://www.oasis-open.org/specs/a503.htm[OASIS Technical Resolution TR 9503:1995].
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+
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+
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+ == Installation
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+
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+ Add this line to your application's Gemfile:
23
+
24
+ [source,ruby]
25
+ ----
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+ gem 'oasis-etm'
27
+ ----
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+
29
+ And then execute:
30
+
31
+ [source,shell]
32
+ ----
33
+ bundle install
34
+ ----
35
+
36
+ Or install it yourself as:
37
+
38
+ [source,shell]
39
+ ----
40
+ gem install oasis-etm
41
+ ----
42
+
43
+
44
+ == Usage
45
+
46
+ === Basic example
47
+
48
+ [source,ruby]
49
+ ----
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+ require 'oasis-etm'
51
+
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+ # Parse an ETM XML file
53
+ table = Oasis::Etm::Table.from_xml(File.read('table.xml'))
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+
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+ # Access table attributes
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+ puts table.frame
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+ puts table.colsep
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+ puts table.rowsep
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+
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+ # Access table content
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+ table.tgroups.each do |tgroup|
62
+ tgroup.colspecs.each do |colspec|
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+ puts "Column #{colspec.colnum}: #{colspec.colwidth}"
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+ end
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+ end
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+
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+ # Create a new table
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+ table = Oasis::Etm::Table.new(
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+ frame: 'all',
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+ colsep: 1,
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+ rowsep: 1,
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+ tgroups: [
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+ Oasis::Etm::Tgroup.new(
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+ cols: 3,
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+ colspecs: [
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+ Oasis::Etm::Colspec.new(colnum: 1, colwidth: '1*'),
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+ Oasis::Etm::Colspec.new(colnum: 2, colwidth: '2*'),
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+ Oasis::Etm::Colspec.new(colnum: 3, colwidth: '1*')
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+ ]
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+ )
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+ ]
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+ )
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+
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+ # Convert to XML
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+ xml = table.to_xml
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+ ----
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+
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+ === XML schema
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+
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+ The OASIS ETM format follows this basic structure:
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+
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+ [source,xml]
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+ ----
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+ <table frame="all" colsep="1" rowsep="1">
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+ <title>Sample Table</title>
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+ <tgroup cols="3">
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+ <colspec colnum="1" colwidth="1*"/>
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+ <colspec colnum="2" colwidth="2*"/>
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+ <colspec colnum="3" colwidth="1*"/>
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+ <thead>
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+ <row>
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+ <entry>Header 1</entry>
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+ <entry>Header 2</entry>
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+ <entry>Header 3</entry>
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+ </row>
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+ </thead>
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+ <tbody>
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+ <row>
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+ <entry>Cell 1</entry>
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+ <entry>Cell 2</entry>
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+ <entry>Cell 3</entry>
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+ </row>
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+ </tbody>
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+ </tgroup>
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+ </table>
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+ ----
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+
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+ == Development
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+
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+ === Test files
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+
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+ `spec/fixtures/native/docbook_example.xml`::
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+ https://tdg.docbook.org/tdg/4.5/table
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+
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+ `spec/fixtures/niso-jats/niso-jats-table-wrap.xml`::
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+ https://jats.nlm.nih.gov/options/OASIS/tag-library/19990315/element/oasis-table.html
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+ This is to test the OASIS exchange table model when it is namespaced from
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+ another location.
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+
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+ `spec/fixtures/isosts/isosts_tables.cals.{nn}.xml`::
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+ Tables extracted from https://www.iso.org/schema/isosts/cals/test/isosts_tables.cals.xml.
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+ This is to test the OASIS exchange table model when it is namespaced from
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+ another location.
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+
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+
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+ == Contributing
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+
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+ Bug reports and pull requests are welcome. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the code of conduct.
139
+
140
+ . Fork it
141
+ . Create your feature branch (`git checkout -b my-new-feature`)
142
+ . Commit your changes (`git commit -am 'Add some feature'`)
143
+ . Push to the branch (`git push origin my-new-feature`)
144
+ . Create new Pull Request
145
+
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+
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+ == License and Copyright
148
+
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+ This project is licensed under the BSD 2-clause License.
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+ See the link:LICENSE.md[] file for details.
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+
152
+ Copyright Ribose.
data/Rakefile ADDED
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+ # frozen_string_literal: true
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+
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+ require "bundler/gem_tasks"
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+ require "rspec/core/rake_task"
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+
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+ RSpec::Core::RakeTask.new(:spec)
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+
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+ require "rubocop/rake_task"
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+
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+ RuboCop::RakeTask.new
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+
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+ task default: %i[spec rubocop]
data/bin/console ADDED
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+ #!/usr/bin/env ruby
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+ # frozen_string_literal: true
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+
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+ require "bundler/setup"
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+ require "oasis/etm"
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+
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+ # You can add fixtures and/or initialization code here to make experimenting
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+ # with your gem easier. You can also use a different console, if you like.
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+
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+ require "irb"
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+ IRB.start(__FILE__)
data/bin/setup ADDED
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+ #!/usr/bin/env bash
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+ set -euo pipefail
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+ IFS=$'\n\t'
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+ set -vx
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+
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+ bundle install
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+
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+ # Do any other automated setup that you need to do here
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+ module Oasis
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+ module Etm
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+ class Colspec < Lutaml::Model::Serializable
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+ # Optional attributes
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+ attribute :colnum, :integer
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+ attribute :colname, :string
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+ attribute :colwidth, :string
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+ attribute :colsep, :integer, values: [0, 1]
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+ attribute :rowsep, :integer, values: [0, 1]
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+ attribute :align, :string, values: %w[left right center justify char]
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+ attribute :char, :string
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+ attribute :charoff, :string
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+
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+ xml do
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+ root "colspec"
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+
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+ map_attribute "colnum", to: :colnum
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+ map_attribute "colname", to: :colname
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+ map_attribute "colwidth", to: :colwidth
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+ map_attribute "colsep", to: :colsep
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+ map_attribute "rowsep", to: :rowsep
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+ map_attribute "align", to: :align
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+ map_attribute "char", to: :char
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+ map_attribute "charoff", to: :charoff
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+ end
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+ end
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+ end
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+ end
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+ module Oasis
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+ module Etm
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+ class Entry < Lutaml::Model::Serializable
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+ # Optional attributes
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+ attribute :colname, :string
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+ attribute :namest, :string
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+ attribute :nameend, :string
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+ attribute :morerows, :integer
9
+ attribute :colsep, :integer, values: [0, 1]
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+ attribute :rowsep, :integer, values: [0, 1]
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+ attribute :align, :string, values: %w[left right center justify char]
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+ attribute :char, :string
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+ attribute :charoff, :string
14
+ attribute :valign, :string, values: %w[top middle bottom]
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+
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+ # Content
17
+ attribute :content, :string
18
+
19
+ xml do
20
+ root "entry"
21
+
22
+ # Attribute mappings
23
+ map_attribute "colname", to: :colname
24
+ map_attribute "namest", to: :namest
25
+ map_attribute "nameend", to: :nameend
26
+ map_attribute "morerows", to: :morerows
27
+ map_attribute "colsep", to: :colsep
28
+ map_attribute "rowsep", to: :rowsep
29
+ map_attribute "align", to: :align
30
+ map_attribute "char", to: :char
31
+ map_attribute "charoff", to: :charoff
32
+ map_attribute "valign", to: :valign
33
+
34
+ # Content mapping
35
+ map_content to: :content
36
+ end
37
+ end
38
+ end
39
+ end
@@ -0,0 +1,22 @@
1
+ require_relative "entry"
2
+
3
+ module Oasis
4
+ module Etm
5
+ class Row < Lutaml::Model::Serializable
6
+ # Optional attributes
7
+ attribute :rowsep, :integer, values: [0, 1]
8
+ attribute :valign, :string, values: %w[top middle bottom]
9
+
10
+ # Content
11
+ attribute :entries, Entry, collection: true
12
+
13
+ xml do
14
+ root "row"
15
+
16
+ map_attribute "rowsep", to: :rowsep
17
+ map_attribute "valign", to: :valign
18
+ map_element "entry", to: :entries
19
+ end
20
+ end
21
+ end
22
+ end
@@ -0,0 +1,31 @@
1
+ require_relative "tgroup"
2
+
3
+ module Oasis
4
+ module Etm
5
+ class Table < Lutaml::Model::Serializable
6
+ # Table attributes
7
+ attribute :frame, :string, values: %w[top bottom topbot all sides none]
8
+ attribute :colsep, :integer, values: [0, 1]
9
+ attribute :rowsep, :integer, values: [0, 1]
10
+ attribute :pgwide, :integer, values: [0, 1]
11
+
12
+ # Table content
13
+ attribute :title, :string
14
+ attribute :tgroups, Tgroup, collection: true
15
+
16
+ xml do
17
+ root "table"
18
+
19
+ # Frame mappings
20
+ map_attribute "frame", to: :frame
21
+ map_attribute "colsep", to: :colsep
22
+ map_attribute "rowsep", to: :rowsep
23
+ map_attribute "pgwide", to: :pgwide
24
+
25
+ # Content mappings
26
+ map_element "title", to: :title
27
+ map_element "tgroup", to: :tgroups
28
+ end
29
+ end
30
+ end
31
+ end
@@ -0,0 +1,20 @@
1
+ require_relative "row"
2
+
3
+ module Oasis
4
+ module Etm
5
+ class Tbody < Lutaml::Model::Serializable
6
+ # Optional attributes
7
+ attribute :valign, :string, values: %w[top middle bottom]
8
+
9
+ # Content
10
+ attribute :rows, Row, collection: true
11
+
12
+ xml do
13
+ root "tbody"
14
+
15
+ map_attribute "valign", to: :valign
16
+ map_element "row", to: :rows
17
+ end
18
+ end
19
+ end
20
+ end
@@ -0,0 +1,28 @@
1
+ module Oasis
2
+ module Etm
3
+ class Colspec < Lutaml::Model::Serializable
4
+ # Optional attributes
5
+ attribute :colnum, :integer
6
+ attribute :colname, :string
7
+ attribute :colwidth, :string
8
+ attribute :colsep, :integer, values: [0, 1]
9
+ attribute :rowsep, :integer, values: [0, 1]
10
+ attribute :align, :string, values: %w[left right center justify char]
11
+ attribute :char, :string
12
+ attribute :charoff, :string
13
+
14
+ xml do
15
+ root "colspec"
16
+
17
+ map_attribute "colnum", to: :colnum
18
+ map_attribute "colname", to: :colname
19
+ map_attribute "colwidth", to: :colwidth
20
+ map_attribute "colsep", to: :colsep
21
+ map_attribute "rowsep", to: :rowsep
22
+ map_attribute "align", to: :align
23
+ map_attribute "char", to: :char
24
+ map_attribute "charoff", to: :charoff
25
+ end
26
+ end
27
+ end
28
+ end
@@ -0,0 +1,37 @@
1
+ require_relative "colspec"
2
+ require_relative "thead"
3
+ require_relative "tbody"
4
+
5
+ module Oasis
6
+ module Etm
7
+ class Tgroup < Lutaml::Model::Serializable
8
+ # Required attributes
9
+ attribute :cols, :integer
10
+
11
+ # Optional attributes
12
+ attribute :colsep, :integer, values: [0, 1]
13
+ attribute :rowsep, :integer, values: [0, 1]
14
+ attribute :align, :string, values: %w[left right center justify char]
15
+
16
+ # Content
17
+ attribute :colspecs, Colspec, collection: true
18
+ attribute :thead, Thead
19
+ attribute :tbody, Tbody
20
+
21
+ xml do
22
+ root "tgroup"
23
+
24
+ # Attribute mappings
25
+ map_attribute "cols", to: :cols
26
+ map_attribute "colsep", to: :colsep
27
+ map_attribute "rowsep", to: :rowsep
28
+ map_attribute "align", to: :align
29
+
30
+ # Content mappings
31
+ map_element "colspec", to: :colspecs
32
+ map_element "thead", to: :thead
33
+ map_element "tbody", to: :tbody
34
+ end
35
+ end
36
+ end
37
+ end
@@ -0,0 +1,20 @@
1
+ require_relative "row"
2
+
3
+ module Oasis
4
+ module Etm
5
+ class Thead < Lutaml::Model::Serializable
6
+ # Optional attributes
7
+ attribute :valign, :string, values: %w[top middle bottom]
8
+
9
+ # Content
10
+ attribute :rows, Row, collection: true
11
+
12
+ xml do
13
+ root "thead"
14
+
15
+ map_attribute "valign", to: :valign
16
+ map_element "row", to: :rows
17
+ end
18
+ end
19
+ end
20
+ end
@@ -0,0 +1,7 @@
1
+ # frozen_string_literal: true
2
+
3
+ module Oasis
4
+ module Etm
5
+ VERSION = "0.1.0"
6
+ end
7
+ end