nyaplot 0.1.6 → 0.2.0.rc1

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Files changed (34) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +1 -0
  3. data/.gitmodules +4 -3
  4. data/examples/notebook/3DPlot.ipynb +398 -455
  5. data/examples/notebook/Interaction_with_DataFrame.ipynb +572 -650
  6. data/examples/notebook/Introduction.ipynb +452 -525
  7. data/examples/notebook/Mapnya.ipynb +441 -212
  8. data/examples/notebook/Nyaplotv2.ipynb +307 -0
  9. data/lib/nyaplot.rb +7 -3
  10. data/lib/nyaplot/base.rb +80 -46
  11. data/lib/nyaplot/core.rb +45 -5
  12. data/lib/nyaplot/data.rb +220 -172
  13. data/lib/nyaplot/glyph.rb +227 -0
  14. data/lib/nyaplot/interactive.rb +94 -0
  15. data/lib/nyaplot/pane.rb +43 -0
  16. data/lib/nyaplot/plot.rb +173 -124
  17. data/lib/nyaplot/position.rb +7 -0
  18. data/lib/nyaplot/scale.rb +19 -0
  19. data/lib/nyaplot/sheet.rb +83 -0
  20. data/lib/nyaplot/simple/stage.rb +29 -0
  21. data/lib/nyaplot/stage2d.rb +56 -0
  22. data/lib/nyaplot/templates/init.js.erb +1 -1
  23. data/lib/nyaplot/templates/init_interactive.js +77 -0
  24. data/lib/nyaplot/templates/iruby.erb +2 -9
  25. data/lib/nyaplot/version.rb +1 -1
  26. data/lib/nyaplot3d/core.rb +1 -1
  27. data/nyaplot.gemspec +1 -26
  28. metadata +29 -10
  29. data/lib/mapnya/datasets/geo-boundaries-world-110m/README.md +0 -3
  30. data/lib/mapnya/datasets/geo-boundaries-world-110m/countries.geojson +0 -360
  31. data/lib/mapnya/datasets/geo-boundaries-world-110m/datapackage.json +0 -35
  32. data/lib/nyaplot/database.rb +0 -22
  33. data/lib/nyaplot/diagram.rb +0 -341
  34. data/lib/nyaplot/frame.rb +0 -70
data/examples/notebook/Interaction_with_DataFrame.ipynb CHANGED
@@ -1,686 +1,608 @@
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  {
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- "cells": [
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- {
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- "cell_type": "markdown",
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- "metadata": {},
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- "source": [
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- "# Nyaplot Tutorial 2: Interaction with DataFrame"
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- ]
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- },
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- {
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- "cell_type": "markdown",
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- "metadata": {},
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- "source": [
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- "I have alreay explained about Nyaplot::DataFrame in tutorial 1, but it's not enough to tell the usefulness. This notebook consists of 2 use case using DataFrame."
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- ]
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- },
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+ "metadata": {
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+ "language": "ruby",
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+ "name": "",
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+ "signature": "sha256:f3b00ded06dda0b068ae890bed29a5316678bef352b278ef403656a75c65158a"
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+ },
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+ "nbformat": 3,
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+ "nbformat_minor": 0,
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+ "worksheets": [
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  {
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- "cell_type": "code",
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- "execution_count": 1,
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- "metadata": {
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- "collapsed": false
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- },
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- "outputs": [
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+ "cells": [
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  {
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- "data": {
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- "text/html": [
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- "<script type='text/javascript'>if(window['d3'] === undefined ||\n",
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- " window['Nyaplot'] === undefined){\n",
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- " var path = {\"d3\":\"http://d3js.org/d3.v3.min\",\"downloadable\":\"http://cdn.rawgit.com/domitry/d3-downloadable/master/d3-downloadable\"};\n",
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- "\n",
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- "\n",
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- "\n",
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- " var shim = {\"d3\":{\"exports\":\"d3\"},\"downloadable\":{\"exports\":\"downloadable\"}};\n",
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- "\n",
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- " require.config({paths: path, shim:shim});\n",
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- "\n",
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- "\n",
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- "require(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');require(['downloadable'], function(downloadable){window['downloadable']=downloadable;console.log('finished loading downloadable');\n",
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- "\n",
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- "\tvar script = d3.select(\"head\")\n",
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- "\t .append(\"script\")\n",
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- "\t .attr(\"src\", \"http://cdn.rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\")\n",
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- "\t .attr(\"async\", true);\n",
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- "\n",
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- "\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\n",
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- "\n",
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- "\n",
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- "\t var event = document.createEvent(\"HTMLEvents\");\n",
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- "\t event.initEvent(\"load_nyaplot\",false,false);\n",
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- "\t window.dispatchEvent(event);\n",
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- "\t console.log('Finished loading Nyaplotjs');\n",
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- "\n",
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- "\t};\n",
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- "\n",
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- "\n",
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- "});});\n",
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- "}\n",
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- "</script>"
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- ],
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- "text/plain": [
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- "\"if(window['d3'] === undefined ||\\n window['Nyaplot'] === undefined){\\n var path = {\\\"d3\\\":\\\"http://d3js.org/d3.v3.min\\\",\\\"downloadable\\\":\\\"http://cdn.rawgit.com/domitry/d3-downloadable/master/d3-downloadable\\\"};\\n\\n\\n\\n var shim = {\\\"d3\\\":{\\\"exports\\\":\\\"d3\\\"},\\\"downloadable\\\":{\\\"exports\\\":\\\"downloadable\\\"}};\\n\\n require.config({paths: path, shim:shim});\\n\\n\\nrequire(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');require(['downloadable'], function(downloadable){window['downloadable']=downloadable;console.log('finished loading downloadable');\\n\\n\\tvar script = d3.select(\\\"head\\\")\\n\\t .append(\\\"script\\\")\\n\\t .attr(\\\"src\\\", \\\"http://cdn.rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\\\")\\n\\t .attr(\\\"async\\\", true);\\n\\n\\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\\n\\n\\n\\t var event = document.createEvent(\\\"HTMLEvents\\\");\\n\\t event.initEvent(\\\"load_nyaplot\\\",false,false);\\n\\t window.dispatchEvent(event);\\n\\t console.log('Finished loading Nyaplotjs');\\n\\n\\t};\\n\\n\\n});});\\n}\\n\""
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- ]
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- },
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- "execution_count": 1,
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+ "cell_type": "heading",
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+ "level": 1,
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  "metadata": {},
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- "output_type": "execute_result"
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+ "source": [
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+ "Nyaplot Tutorial 2: Interaction with DataFrame"
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+ ]
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  },
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  {
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- "data": {
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- "text/plain": [
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- "true"
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- ]
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- },
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- "execution_count": 1,
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+ "cell_type": "markdown",
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  "metadata": {},
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- "output_type": "execute_result"
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- }
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- ],
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- "source": [
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- "gem 'nyaplot', '0.1.5'\n",
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- "require 'nyaplot'"
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- ]
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- },
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- {
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- "cell_type": "markdown",
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- "metadata": {},
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- "source": [
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- "## Case 1: Scatter with original tooltips"
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- ]
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- },
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- {
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- "cell_type": "markdown",
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- "metadata": {},
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- "source": [
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- "First, prepare sample data and put it into DataFrame. Then build a scatter plot based on it."
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- ]
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- },
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- {
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- "cell_type": "code",
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- "execution_count": 2,
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- "metadata": {
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- "collapsed": false
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- },
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- "outputs": [
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+ "source": [
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+ "I have alreay explained about Nyaplot::DataFrame in tutorial 1, but it's not enough to tell the usefulness. This notebook consists of 2 use case using DataFrame."
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+ ]
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+ },
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  {
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- "data": {
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- "text/html": [
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- "<table><tr><th>x</th><th>y</th><th>name</th></tr><tr><td>0.3776941903756781</td><td>3.150631669472884</td><td>cat0</td></tr><tr><td>1.16523539526362</td><td>3.636084983829032</td><td>cat1</td></tr><tr><td>3.4024015690223557</td><td>1.5265781962652962</td><td>cat2</td></tr><tr><td>0.6478786205183784</td><td>4.697932060531303</td><td>cat3</td></tr><tr><td>1.502303692675978</td><td>0.23551205104727635</td><td>cat4</td></tr><tr><td>0.6186835562297704</td><td>1.5712039108775393</td><td>cat5</td></tr><tr><td>2.360417118852578</td><td>3.037560696785177</td><td>cat6</td></tr><tr><td>0.9958851328846746</td><td>3.3965329595925136</td><td>cat7</td></tr><tr><td>1.0207006596250006</td><td>0.020049783384994968</td><td>cat8</td></tr><tr><td>1.8874015058395726</td><td>2.973976083790996</td><td>cat9</td></tr></table>"
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- ],
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- "text/plain": [
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- "#<Nyaplot::DataFrame:0x000000011c0f60 @name=\"4415e395-2c04-483a-a794-91e437f82ff9\", @rows=[{:x=>0.3776941903756781, :y=>3.150631669472884, :name=>\"cat0\"}, {:x=>1.16523539526362, :y=>3.636084983829032, :name=>\"cat1\"}, {:x=>3.4024015690223557, :y=>1.5265781962652962, :name=>\"cat2\"}, {:x=>0.6478786205183784, :y=>4.697932060531303, :name=>\"cat3\"}, {:x=>1.502303692675978, :y=>0.23551205104727635, :name=>\"cat4\"}, {:x=>0.6186835562297704, :y=>1.5712039108775393, :name=>\"cat5\"}, {:x=>2.360417118852578, :y=>3.037560696785177, :name=>\"cat6\"}, {:x=>0.9958851328846746, :y=>3.3965329595925136, :name=>\"cat7\"}, {:x=>1.0207006596250006, :y=>0.020049783384994968, :name=>\"cat8\"}, {:x=>1.8874015058395726, :y=>2.973976083790996, :name=>\"cat9\"}]>"
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- ]
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- },
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- "execution_count": 2,
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+ "cell_type": "code",
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+ "collapsed": false,
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+ "input": [
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+ "require 'nyaplot'"
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+ ],
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+ "language": "python",
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  "metadata": {},
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- "output_type": "execute_result"
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- }
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- ],
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- "source": [
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- "samples = Array.new(10).map.with_index{|d,i| 'cat'+i.to_s}\n",
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- "x=[];y=[];home=[]\n",
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- "10.times do\n",
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- " x.push(5*rand)\n",
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- " y.push(5*rand)\n",
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- "end\n",
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- "df = Nyaplot::DataFrame.new({x:x,y:y,name:samples})\n",
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- "df"
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- ]
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- },
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- {
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- "cell_type": "code",
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- "execution_count": 3,
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- "metadata": {
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- "collapsed": false
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- },
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- "outputs": [
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+ "outputs": [
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+ {
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+ "html": [
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+ "<script type='text/javascript'>if(window['d3'] === undefined ||\n",
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+ " window['Nyaplot'] === undefined){\n",
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+ " var path = {\"d3\":\"http://d3js.org/d3.v3.min\"};\n",
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+ "\n",
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+ "\n",
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+ "\n",
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+ " var shim = {\"d3\":{\"exports\":\"d3\"}};\n",
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+ "\n",
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+ " require.config({paths: path, shim:shim});\n",
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+ "\n",
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+ "\n",
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+ "require(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');\n",
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+ "\n",
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+ "\tvar script = d3.select(\"head\")\n",
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+ "\t .append(\"script\")\n",
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+ "\t .attr(\"src\", \"http://cdn.rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\")\n",
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+ "\t .attr(\"async\", true);\n",
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+ "\n",
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+ "\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\n",
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+ "\n",
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+ "\n",
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+ "\t var event = document.createEvent(\"HTMLEvents\");\n",
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+ "\t event.initEvent(\"load_nyaplot\",false,false);\n",
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+ "\t window.dispatchEvent(event);\n",
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+ "\t console.log('Finished loading Nyaplotjs');\n",
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+ "\n",
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+ "\t};\n",
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+ "\n",
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+ "\n",
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+ "});\n",
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+ "}\n",
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+ "</script>"
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+ ],
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+ "metadata": {},
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+ "output_type": "pyout",
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+ "prompt_number": 1,
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+ "text": [
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+ "\"if(window['d3'] === undefined ||\\n window['Nyaplot'] === undefined){\\n var path = {\\\"d3\\\":\\\"http://d3js.org/d3.v3.min\\\"};\\n\\n\\n\\n var shim = {\\\"d3\\\":{\\\"exports\\\":\\\"d3\\\"}};\\n\\n require.config({paths: path, shim:shim});\\n\\n\\nrequire(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');\\n\\n\\tvar script = d3.select(\\\"head\\\")\\n\\t .append(\\\"script\\\")\\n\\t .attr(\\\"src\\\", \\\"http://cdn.rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\\\")\\n\\t .attr(\\\"async\\\", true);\\n\\n\\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\\n\\n\\n\\t var event = document.createEvent(\\\"HTMLEvents\\\");\\n\\t event.initEvent(\\\"load_nyaplot\\\",false,false);\\n\\t window.dispatchEvent(event);\\n\\t console.log('Finished loading Nyaplotjs');\\n\\n\\t};\\n\\n\\n});\\n}\\n\""
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+ ]
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+ },
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+ {
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+ "metadata": {},
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+ "output_type": "pyout",
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+ "prompt_number": 1,
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+ "text": [
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+ "true"
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+ }
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+ ],
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+ "prompt_number": 1
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+ },
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  {
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- "data": {
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- "text/plain": [
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- "#<Nyaplot::Diagram:0x000000011704e8 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y}, :data=>\"4415e395-2c04-483a-a794-91e437f82ff9\"}, @xrange=[0.3776941903756781, 3.4024015690223557], @yrange=[0.020049783384994968, 4.697932060531303]>"
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- ]
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- },
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- "execution_count": 3,
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+ "cell_type": "heading",
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+ "level": 2,
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- "output_type": "execute_result"
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- }
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- ],
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- "source": [
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- "plot = Nyaplot::Plot.new\n",
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- "plot.x_label(\"weight [kg]\")\n",
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- "plot.y_label(\"height [m]\")\n",
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- "sc = plot.add_with_df(df, :scatter, :x, :y)"
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- ]
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- },
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- {
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- "cell_type": "code",
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- "execution_count": 4,
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- "metadata": {
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- "collapsed": false
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- },
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- "outputs": [
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+ "source": [
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+ "Case 1: Scatter with original tooltips"
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+ ]
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+ },
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  {
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- "data": {
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- "text/html": [
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- "<div id='vis-947cd552-665a-4da7-82cd-ebca494fac14'></div>\n",
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- "<script>\n",
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- "(function(){\n",
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- " var render = function(){\n",
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- " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\"},\"data\":\"4415e395-2c04-483a-a794-91e437f82ff9\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.3776941903756781,3.4024015690223557],\"yrange\":[0.020049783384994968,4.697932060531303]}}],\"data\":{\"4415e395-2c04-483a-a794-91e437f82ff9\":[{\"x\":0.3776941903756781,\"y\":3.150631669472884,\"name\":\"cat0\"},{\"x\":1.16523539526362,\"y\":3.636084983829032,\"name\":\"cat1\"},{\"x\":3.4024015690223557,\"y\":1.5265781962652962,\"name\":\"cat2\"},{\"x\":0.6478786205183784,\"y\":4.697932060531303,\"name\":\"cat3\"},{\"x\":1.502303692675978,\"y\":0.23551205104727635,\"name\":\"cat4\"},{\"x\":0.6186835562297704,\"y\":1.5712039108775393,\"name\":\"cat5\"},{\"x\":2.360417118852578,\"y\":3.037560696785177,\"name\":\"cat6\"},{\"x\":0.9958851328846746,\"y\":3.3965329595925136,\"name\":\"cat7\"},{\"x\":1.0207006596250006,\"y\":0.020049783384994968,\"name\":\"cat8\"},{\"x\":1.8874015058395726,\"y\":2.973976083790996,\"name\":\"cat9\"}]},\"extension\":[]}\n",
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- " var id_name = '#vis-947cd552-665a-4da7-82cd-ebca494fac14';\n",
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- " Nyaplot.core.parse(model, id_name);\n",
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- "\n",
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- " require(['downloadable'], function(downloadable){\n",
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- " var svg = d3.select(id_name).select(\"svg\");\n",
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- "\t if(!svg.empty())\n",
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- "\t svg.call(downloadable().filename('fig'));\n",
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- "\t});\n",
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- " };\n",
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- " if(window['Nyaplot']==undefined){\n",
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- " window.addEventListener('load_nyaplot', render, false);\n",
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- "\treturn;\n",
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- " } else {\n",
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- " render();\n",
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- " }\n",
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- "})();\n",
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- "</script>\n"
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- ],
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- "text/plain": [
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- "#<Nyaplot::Frame:0x000000010b7128 @properties={:panes=>[#<Nyaplot::Plot:0x00000001170858 @properties={:diagrams=>[#<Nyaplot::Diagram:0x000000011704e8 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y}, :data=>\"4415e395-2c04-483a-a794-91e437f82ff9\"}, @xrange=[0.3776941903756781, 3.4024015690223557], @yrange=[0.020049783384994968, 4.697932060531303]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.3776941903756781, 3.4024015690223557], :yrange=>[0.020049783384994968, 4.697932060531303]}}>], :data=>{\"4415e395-2c04-483a-a794-91e437f82ff9\"=>#<Nyaplot::DataFrame:0x000000011c0f60 @name=\"4415e395-2c04-483a-a794-91e437f82ff9\", @rows=[{:x=>0.3776941903756781, :y=>3.150631669472884, :name=>\"cat0\"}, {:x=>1.16523539526362, :y=>3.636084983829032, :name=>\"cat1\"}, {:x=>3.4024015690223557, :y=>1.5265781962652962, :name=>\"cat2\"}, {:x=>0.6478786205183784, :y=>4.697932060531303, :name=>\"cat3\"}, {:x=>1.502303692675978, :y=>0.23551205104727635, :name=>\"cat4\"}, {:x=>0.6186835562297704, :y=>1.5712039108775393, :name=>\"cat5\"}, {:x=>2.360417118852578, :y=>3.037560696785177, :name=>\"cat6\"}, {:x=>0.9958851328846746, :y=>3.3965329595925136, :name=>\"cat7\"}, {:x=>1.0207006596250006, :y=>0.020049783384994968, :name=>\"cat8\"}, {:x=>1.8874015058395726, :y=>2.973976083790996, :name=>\"cat9\"}]>}, :extension=>[]}>"
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- ]
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- },
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- "execution_count": 4,
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+ "cell_type": "markdown",
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  "metadata": {},
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- "output_type": "execute_result"
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- }
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- ],
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- "source": [
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- "plot.show"
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- ]
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- },
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- {
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- "cell_type": "markdown",
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- "metadata": {},
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- "source": [
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- "The plot above is not contain `name` information, so add it into tool-tip. Use `tooltip_contents` to add contents to tool-tip."
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- ]
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- },
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- {
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- "cell_type": "code",
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- "execution_count": 5,
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- "metadata": {
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- "collapsed": false
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- },
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- "outputs": [
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+ "source": [
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+ "First, prepare sample data and put it into DataFrame. Then build a scatter plot based on it."
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+ ]
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+ },
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  {
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- "data": {
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- "text/html": [
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- "<div id='vis-236dd441-3e0d-4ae9-9cec-a7b3ff609dee'></div>\n",
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- "<script>\n",
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- "(function(){\n",
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- " var render = function(){\n",
222
- " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\"]},\"data\":\"4415e395-2c04-483a-a794-91e437f82ff9\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.3776941903756781,3.4024015690223557],\"yrange\":[0.020049783384994968,4.697932060531303]}}],\"data\":{\"4415e395-2c04-483a-a794-91e437f82ff9\":[{\"x\":0.3776941903756781,\"y\":3.150631669472884,\"name\":\"cat0\"},{\"x\":1.16523539526362,\"y\":3.636084983829032,\"name\":\"cat1\"},{\"x\":3.4024015690223557,\"y\":1.5265781962652962,\"name\":\"cat2\"},{\"x\":0.6478786205183784,\"y\":4.697932060531303,\"name\":\"cat3\"},{\"x\":1.502303692675978,\"y\":0.23551205104727635,\"name\":\"cat4\"},{\"x\":0.6186835562297704,\"y\":1.5712039108775393,\"name\":\"cat5\"},{\"x\":2.360417118852578,\"y\":3.037560696785177,\"name\":\"cat6\"},{\"x\":0.9958851328846746,\"y\":3.3965329595925136,\"name\":\"cat7\"},{\"x\":1.0207006596250006,\"y\":0.020049783384994968,\"name\":\"cat8\"},{\"x\":1.8874015058395726,\"y\":2.973976083790996,\"name\":\"cat9\"}]},\"extension\":[]}\n",
223
- " var id_name = '#vis-236dd441-3e0d-4ae9-9cec-a7b3ff609dee';\n",
224
- " Nyaplot.core.parse(model, id_name);\n",
225
- "\n",
226
- " require(['downloadable'], function(downloadable){\n",
227
- " var svg = d3.select(id_name).select(\"svg\");\n",
228
- "\t if(!svg.empty())\n",
229
- "\t svg.call(downloadable().filename('fig'));\n",
230
- "\t});\n",
231
- " };\n",
232
- " if(window['Nyaplot']==undefined){\n",
233
- " window.addEventListener('load_nyaplot', render, false);\n",
234
- "\treturn;\n",
235
- " } else {\n",
236
- " render();\n",
237
- " }\n",
238
- "})();\n",
239
- "</script>\n"
240
- ],
241
- "text/plain": [
242
- "#<Nyaplot::Frame:0x000000010935c0 @properties={:panes=>[#<Nyaplot::Plot:0x00000001170858 @properties={:diagrams=>[#<Nyaplot::Diagram:0x000000011704e8 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name]}, :data=>\"4415e395-2c04-483a-a794-91e437f82ff9\"}, @xrange=[0.3776941903756781, 3.4024015690223557], @yrange=[0.020049783384994968, 4.697932060531303]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.3776941903756781, 3.4024015690223557], :yrange=>[0.020049783384994968, 4.697932060531303]}}>], :data=>{\"4415e395-2c04-483a-a794-91e437f82ff9\"=>#<Nyaplot::DataFrame:0x000000011c0f60 @name=\"4415e395-2c04-483a-a794-91e437f82ff9\", @rows=[{:x=>0.3776941903756781, :y=>3.150631669472884, :name=>\"cat0\"}, {:x=>1.16523539526362, :y=>3.636084983829032, :name=>\"cat1\"}, {:x=>3.4024015690223557, :y=>1.5265781962652962, :name=>\"cat2\"}, {:x=>0.6478786205183784, :y=>4.697932060531303, :name=>\"cat3\"}, {:x=>1.502303692675978, :y=>0.23551205104727635, :name=>\"cat4\"}, {:x=>0.6186835562297704, :y=>1.5712039108775393, :name=>\"cat5\"}, {:x=>2.360417118852578, :y=>3.037560696785177, :name=>\"cat6\"}, {:x=>0.9958851328846746, :y=>3.3965329595925136, :name=>\"cat7\"}, {:x=>1.0207006596250006, :y=>0.020049783384994968, :name=>\"cat8\"}, {:x=>1.8874015058395726, :y=>2.973976083790996, :name=>\"cat9\"}]>}, :extension=>[]}>"
243
- ]
244
- },
245
- "execution_count": 5,
105
+ "cell_type": "code",
106
+ "collapsed": false,
107
+ "input": [
108
+ "samples = Array.new(10).map.with_index{|d,i| 'cat'+i.to_s}\n",
109
+ "x=[];y=[];home=[]\n",
110
+ "10.times do\n",
111
+ " x.push(5*rand)\n",
112
+ " y.push(5*rand)\n",
113
+ "end\n",
114
+ "df = Nyaplot::DataFrame.new({x:x,y:y,name:samples})\n",
115
+ "df"
116
+ ],
117
+ "language": "python",
246
118
  "metadata": {},
247
- "output_type": "execute_result"
248
- }
249
- ],
250
- "source": [
251
- "sc.tooltip_contents([:name])\n",
252
- "plot.show"
253
- ]
254
- },
255
- {
256
- "cell_type": "markdown",
257
- "metadata": {},
258
- "source": [
259
- "Tool-tip can include multiple lines, but the DataFrame has only three columns and that's not enough to add more line to tool-tip. Let's add `home` column to it."
260
- ]
261
- },
262
- {
263
- "cell_type": "code",
264
- "execution_count": 6,
265
- "metadata": {
266
- "collapsed": false
267
- },
268
- "outputs": [
119
+ "outputs": [
120
+ {
121
+ "html": [
122
+ "<table><tr><th>x</th><th>y</th><th>name</th></tr><tr><td>4.484045721238493</td><td>1.4236755629461113</td><td>cat0</td></tr><tr><td>0.09192346825461384</td><td>3.859486471834251</td><td>cat1</td></tr><tr><td>2.7691211926797203</td><td>0.2724593604033648</td><td>cat2</td></tr><tr><td>3.790577538193376</td><td>4.3849875032095715</td><td>cat3</td></tr><tr><td>3.075663771695602</td><td>1.4208854855110642</td><td>cat4</td></tr><tr><td>1.0768103258740274</td><td>1.3575402862086254</td><td>cat5</td></tr><tr><td>1.7266282564027458</td><td>2.061477073499303</td><td>cat6</td></tr><tr><td>3.0954512252218382</td><td>0.3593608483818478</td><td>cat7</td></tr><tr><td>2.7941521911455696</td><td>0.4127745317214565</td><td>cat8</td></tr><tr><td>4.523075237278958</td><td>2.2397417984244443</td><td>cat9</td></tr></table>"
123
+ ],
124
+ "metadata": {},
125
+ "output_type": "pyout",
126
+ "prompt_number": 2,
127
+ "text": [
128
+ "#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\"}]>"
129
+ ]
130
+ }
131
+ ],
132
+ "prompt_number": 2
133
+ },
269
134
  {
270
- "data": {
271
- "text/html": [
272
- "<table><tr><th>x</th><th>y</th><th>name</th><th>home</th></tr><tr><td>0.3776941903756781</td><td>3.150631669472884</td><td>cat0</td><td>Kyoto</td></tr><tr><td>1.16523539526362</td><td>3.636084983829032</td><td>cat1</td><td>London</td></tr><tr><td>3.4024015690223557</td><td>1.5265781962652962</td><td>cat2</td><td>Los Angeles</td></tr><tr><td>0.6478786205183784</td><td>4.697932060531303</td><td>cat3</td><td>Kyoto</td></tr><tr><td>1.502303692675978</td><td>0.23551205104727635</td><td>cat4</td><td>Puretoria</td></tr><tr><td>0.6186835562297704</td><td>1.5712039108775393</td><td>cat5</td><td>Los Angeles</td></tr><tr><td>2.360417118852578</td><td>3.037560696785177</td><td>cat6</td><td>London</td></tr><tr><td>0.9958851328846746</td><td>3.3965329595925136</td><td>cat7</td><td>Puretoria</td></tr><tr><td>1.0207006596250006</td><td>0.020049783384994968</td><td>cat8</td><td>Kyoto</td></tr><tr><td>1.8874015058395726</td><td>2.973976083790996</td><td>cat9</td><td>Los Angeles</td></tr></table>"
273
- ],
274
- "text/plain": [
275
- "#<Nyaplot::DataFrame:0x000000011c0f60 @name=\"4415e395-2c04-483a-a794-91e437f82ff9\", @rows=[{:x=>0.3776941903756781, :y=>3.150631669472884, :name=>\"cat0\", :home=>\"Kyoto\"}, {:x=>1.16523539526362, :y=>3.636084983829032, :name=>\"cat1\", :home=>\"London\"}, {:x=>3.4024015690223557, :y=>1.5265781962652962, :name=>\"cat2\", :home=>\"Los Angeles\"}, {:x=>0.6478786205183784, :y=>4.697932060531303, :name=>\"cat3\", :home=>\"Kyoto\"}, {:x=>1.502303692675978, :y=>0.23551205104727635, :name=>\"cat4\", :home=>\"Puretoria\"}, {:x=>0.6186835562297704, :y=>1.5712039108775393, :name=>\"cat5\", :home=>\"Los Angeles\"}, {:x=>2.360417118852578, :y=>3.037560696785177, :name=>\"cat6\", :home=>\"London\"}, {:x=>0.9958851328846746, :y=>3.3965329595925136, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>1.0207006596250006, :y=>0.020049783384994968, :name=>\"cat8\", :home=>\"Kyoto\"}, {:x=>1.8874015058395726, :y=>2.973976083790996, :name=>\"cat9\", :home=>\"Los Angeles\"}]>"
276
- ]
277
- },
278
- "execution_count": 6,
135
+ "cell_type": "code",
136
+ "collapsed": false,
137
+ "input": [
138
+ "plot = Nyaplot::Plot.new\n",
139
+ "plot.x_label(\"weight [kg]\")\n",
140
+ "plot.y_label(\"height [m]\")\n",
141
+ "sc = plot.add_with_df(df, :scatter, :x, :y)"
142
+ ],
143
+ "language": "python",
279
144
  "metadata": {},
280
- "output_type": "execute_result"
281
- }
282
- ],
283
- "source": [
284
- "address = ['London', 'Kyoto', 'Los Angeles', 'Puretoria']\n",
285
- "home = Array.new(10,'').map{|d| address.clone.sample}\n",
286
- "df.home = home\n",
287
- "df"
288
- ]
289
- },
290
- {
291
- "cell_type": "code",
292
- "execution_count": 7,
293
- "metadata": {
294
- "collapsed": false
295
- },
296
- "outputs": [
145
+ "outputs": [
146
+ {
147
+ "metadata": {},
148
+ "output_type": "pyout",
149
+ "prompt_number": 3,
150
+ "text": [
151
+ "#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>"
152
+ ]
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+ }
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+ ],
155
+ "prompt_number": 3
156
+ },
297
157
  {
298
- "data": {
299
- "text/html": [
300
- "<div id='vis-c8e88925-55f6-4061-94ce-fa99e09fbc8a'></div>\n",
301
- "<script>\n",
302
- "(function(){\n",
303
- " var render = function(){\n",
304
- " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"]},\"data\":\"4415e395-2c04-483a-a794-91e437f82ff9\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.3776941903756781,3.4024015690223557],\"yrange\":[0.020049783384994968,4.697932060531303]}}],\"data\":{\"4415e395-2c04-483a-a794-91e437f82ff9\":[{\"x\":0.3776941903756781,\"y\":3.150631669472884,\"name\":\"cat0\",\"home\":\"Kyoto\"},{\"x\":1.16523539526362,\"y\":3.636084983829032,\"name\":\"cat1\",\"home\":\"London\"},{\"x\":3.4024015690223557,\"y\":1.5265781962652962,\"name\":\"cat2\",\"home\":\"Los Angeles\"},{\"x\":0.6478786205183784,\"y\":4.697932060531303,\"name\":\"cat3\",\"home\":\"Kyoto\"},{\"x\":1.502303692675978,\"y\":0.23551205104727635,\"name\":\"cat4\",\"home\":\"Puretoria\"},{\"x\":0.6186835562297704,\"y\":1.5712039108775393,\"name\":\"cat5\",\"home\":\"Los Angeles\"},{\"x\":2.360417118852578,\"y\":3.037560696785177,\"name\":\"cat6\",\"home\":\"London\"},{\"x\":0.9958851328846746,\"y\":3.3965329595925136,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":1.0207006596250006,\"y\":0.020049783384994968,\"name\":\"cat8\",\"home\":\"Kyoto\"},{\"x\":1.8874015058395726,\"y\":2.973976083790996,\"name\":\"cat9\",\"home\":\"Los Angeles\"}]},\"extension\":[]}\n",
305
- " var id_name = '#vis-c8e88925-55f6-4061-94ce-fa99e09fbc8a';\n",
306
- " Nyaplot.core.parse(model, id_name);\n",
307
- "\n",
308
- " require(['downloadable'], function(downloadable){\n",
309
- " var svg = d3.select(id_name).select(\"svg\");\n",
310
- "\t if(!svg.empty())\n",
311
- "\t svg.call(downloadable().filename('fig'));\n",
312
- "\t});\n",
313
- " };\n",
314
- " if(window['Nyaplot']==undefined){\n",
315
- " window.addEventListener('load_nyaplot', render, false);\n",
316
- "\treturn;\n",
317
- " } else {\n",
318
- " render();\n",
319
- " }\n",
320
- "})();\n",
321
- "</script>\n"
322
- ],
323
- "text/plain": [
324
- "#<Nyaplot::Frame:0x00000000e46010 @properties={:panes=>[#<Nyaplot::Plot:0x00000001170858 @properties={:diagrams=>[#<Nyaplot::Diagram:0x000000011704e8 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name, :home]}, :data=>\"4415e395-2c04-483a-a794-91e437f82ff9\"}, @xrange=[0.3776941903756781, 3.4024015690223557], @yrange=[0.020049783384994968, 4.697932060531303]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.3776941903756781, 3.4024015690223557], :yrange=>[0.020049783384994968, 4.697932060531303]}}>], :data=>{\"4415e395-2c04-483a-a794-91e437f82ff9\"=>#<Nyaplot::DataFrame:0x000000011c0f60 @name=\"4415e395-2c04-483a-a794-91e437f82ff9\", @rows=[{:x=>0.3776941903756781, :y=>3.150631669472884, :name=>\"cat0\", :home=>\"Kyoto\"}, {:x=>1.16523539526362, :y=>3.636084983829032, :name=>\"cat1\", :home=>\"London\"}, {:x=>3.4024015690223557, :y=>1.5265781962652962, :name=>\"cat2\", :home=>\"Los Angeles\"}, {:x=>0.6478786205183784, :y=>4.697932060531303, :name=>\"cat3\", :home=>\"Kyoto\"}, {:x=>1.502303692675978, :y=>0.23551205104727635, :name=>\"cat4\", :home=>\"Puretoria\"}, {:x=>0.6186835562297704, :y=>1.5712039108775393, :name=>\"cat5\", :home=>\"Los Angeles\"}, {:x=>2.360417118852578, :y=>3.037560696785177, :name=>\"cat6\", :home=>\"London\"}, {:x=>0.9958851328846746, :y=>3.3965329595925136, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>1.0207006596250006, :y=>0.020049783384994968, :name=>\"cat8\", :home=>\"Kyoto\"}, {:x=>1.8874015058395726, :y=>2.973976083790996, :name=>\"cat9\", :home=>\"Los Angeles\"}]>}, :extension=>[]}>"
325
- ]
326
- },
327
- "execution_count": 7,
158
+ "cell_type": "code",
159
+ "collapsed": false,
160
+ "input": [
161
+ "plot.show"
162
+ ],
163
+ "language": "python",
328
164
  "metadata": {},
329
- "output_type": "execute_result"
330
- }
331
- ],
332
- "source": [
333
- "sc.tooltip_contents([:name, :home])\n",
334
- "plot.show"
335
- ]
336
- },
337
- {
338
- "cell_type": "markdown",
339
- "metadata": {},
340
- "source": [
341
- "Then, fill points on the scatter in different colors according to 'home' column. To do so, specify column name by `fill_by` method."
342
- ]
343
- },
344
- {
345
- "cell_type": "code",
346
- "execution_count": 8,
347
- "metadata": {
348
- "collapsed": false
349
- },
350
- "outputs": [
165
+ "outputs": [
166
+ {
167
+ "html": [
168
+ "<div id='vis-29c1a9e8-17ad-4c7b-a4a1-18f6cc98363f'></div>\n",
169
+ "<script>\n",
170
+ "(function(){\n",
171
+ " var render = function(){\n",
172
+ " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\"},\"data\":\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.09192346825461384,4.523075237278958],\"yrange\":[0.2724593604033648,4.3849875032095715]}}],\"data\":{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\":[{\"x\":4.484045721238493,\"y\":1.4236755629461113,\"name\":\"cat0\"},{\"x\":0.09192346825461384,\"y\":3.859486471834251,\"name\":\"cat1\"},{\"x\":2.7691211926797203,\"y\":0.2724593604033648,\"name\":\"cat2\"},{\"x\":3.790577538193376,\"y\":4.3849875032095715,\"name\":\"cat3\"},{\"x\":3.075663771695602,\"y\":1.4208854855110642,\"name\":\"cat4\"},{\"x\":1.0768103258740274,\"y\":1.3575402862086254,\"name\":\"cat5\"},{\"x\":1.7266282564027458,\"y\":2.061477073499303,\"name\":\"cat6\"},{\"x\":3.0954512252218382,\"y\":0.3593608483818478,\"name\":\"cat7\"},{\"x\":2.7941521911455696,\"y\":0.4127745317214565,\"name\":\"cat8\"},{\"x\":4.523075237278958,\"y\":2.2397417984244443,\"name\":\"cat9\"}]},\"extension\":[]}\n",
173
+ " Nyaplot.core.parse(model, '#vis-29c1a9e8-17ad-4c7b-a4a1-18f6cc98363f');\n",
174
+ " };\n",
175
+ " if(window['Nyaplot']==undefined){\n",
176
+ " window.addEventListener('load_nyaplot', render, false);\n",
177
+ "\treturn;\n",
178
+ " } else {\n",
179
+ " render();\n",
180
+ " }\n",
181
+ "})();\n",
182
+ "</script>\n"
183
+ ],
184
+ "metadata": {},
185
+ "output_type": "pyout",
186
+ "prompt_number": 4,
187
+ "text": [
188
+ "#<Nyaplot::Frame:0xb940e1d8 @properties={:panes=>[#<Nyaplot::Plot:0xb930e2c4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.09192346825461384, 4.523075237278958], :yrange=>[0.2724593604033648, 4.3849875032095715]}}>], :data=>{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"=>#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\"}]>}, :extension=>[]}>"
189
+ ]
190
+ }
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+ ],
192
+ "prompt_number": 4
193
+ },
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194
  {
352
- "data": {
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- "text/html": [
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- "<table><tr><th>rgb(251,180,174)</th><th>rgb(179,205,227)</th><th>rgb(204,235,197)</th><th>rgb(222,203,228)</th><th>rgb(254,217,166)</th><th>rgb(255,255,204)</th><th>rgb(229,216,189)</th><th>rgb(253,218,236)</th><th>rgb(242,242,242)</th></tr><tr><td style=\"background-color:rgb(251,180,174);\">&nbsp;</td><td style=\"background-color:rgb(179,205,227);\">&nbsp;</td><td style=\"background-color:rgb(204,235,197);\">&nbsp;</td><td style=\"background-color:rgb(222,203,228);\">&nbsp;</td><td style=\"background-color:rgb(254,217,166);\">&nbsp;</td><td style=\"background-color:rgb(255,255,204);\">&nbsp;</td><td style=\"background-color:rgb(229,216,189);\">&nbsp;</td><td style=\"background-color:rgb(253,218,236);\">&nbsp;</td><td style=\"background-color:rgb(242,242,242);\">&nbsp;</td></tr></table>"
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- ],
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- "text/plain": [
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- "#<Nyaplot::Color:0x000000015dac18 @source=[\"rgb(251,180,174)\", \"rgb(179,205,227)\", \"rgb(204,235,197)\", \"rgb(222,203,228)\", \"rgb(254,217,166)\", \"rgb(255,255,204)\", \"rgb(229,216,189)\", \"rgb(253,218,236)\", \"rgb(242,242,242)\"]>"
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- ]
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- },
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- "execution_count": 8,
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+ "cell_type": "markdown",
361
196
  "metadata": {},
362
- "output_type": "execute_result"
363
- }
364
- ],
365
- "source": [
366
- "colors = Nyaplot::Colors.qual"
367
- ]
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- },
369
- {
370
- "cell_type": "code",
371
- "execution_count": 9,
372
- "metadata": {
373
- "collapsed": false
374
- },
375
- "outputs": [
197
+ "source": [
198
+ "The plot above is not contain `name` information, so add it into tool-tip. Use `tooltip_contents` to add contents to tool-tip."
199
+ ]
200
+ },
376
201
  {
377
- "data": {
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- "<div id='vis-118dcdc2-e3b7-4279-98e2-f282b63f3364'></div>\n",
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- " var render = function(){\n",
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- " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"],\"color\":[\"rgb(251,180,174)\",\"rgb(179,205,227)\",\"rgb(204,235,197)\",\"rgb(222,203,228)\",\"rgb(254,217,166)\",\"rgb(255,255,204)\",\"rgb(229,216,189)\",\"rgb(253,218,236)\",\"rgb(242,242,242)\"],\"fill_by\":\"home\"},\"data\":\"4415e395-2c04-483a-a794-91e437f82ff9\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.3776941903756781,3.4024015690223557],\"yrange\":[0.020049783384994968,4.697932060531303]}}],\"data\":{\"4415e395-2c04-483a-a794-91e437f82ff9\":[{\"x\":0.3776941903756781,\"y\":3.150631669472884,\"name\":\"cat0\",\"home\":\"Kyoto\"},{\"x\":1.16523539526362,\"y\":3.636084983829032,\"name\":\"cat1\",\"home\":\"London\"},{\"x\":3.4024015690223557,\"y\":1.5265781962652962,\"name\":\"cat2\",\"home\":\"Los Angeles\"},{\"x\":0.6478786205183784,\"y\":4.697932060531303,\"name\":\"cat3\",\"home\":\"Kyoto\"},{\"x\":1.502303692675978,\"y\":0.23551205104727635,\"name\":\"cat4\",\"home\":\"Puretoria\"},{\"x\":0.6186835562297704,\"y\":1.5712039108775393,\"name\":\"cat5\",\"home\":\"Los Angeles\"},{\"x\":2.360417118852578,\"y\":3.037560696785177,\"name\":\"cat6\",\"home\":\"London\"},{\"x\":0.9958851328846746,\"y\":3.3965329595925136,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":1.0207006596250006,\"y\":0.020049783384994968,\"name\":\"cat8\",\"home\":\"Kyoto\"},{\"x\":1.8874015058395726,\"y\":2.973976083790996,\"name\":\"cat9\",\"home\":\"Los Angeles\"}]},\"extension\":[]}\n",
384
- " var id_name = '#vis-118dcdc2-e3b7-4279-98e2-f282b63f3364';\n",
385
- " Nyaplot.core.parse(model, id_name);\n",
386
- "\n",
387
- " require(['downloadable'], function(downloadable){\n",
388
- " var svg = d3.select(id_name).select(\"svg\");\n",
389
- "\t if(!svg.empty())\n",
390
- "\t svg.call(downloadable().filename('fig'));\n",
391
- "\t});\n",
392
- " };\n",
393
- " if(window['Nyaplot']==undefined){\n",
394
- " window.addEventListener('load_nyaplot', render, false);\n",
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- "\treturn;\n",
396
- " } else {\n",
397
- " render();\n",
398
- " }\n",
399
- "})();\n",
400
- "</script>\n"
401
- ],
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- "text/plain": [
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- "#<Nyaplot::Frame:0x000000015cec60 @properties={:panes=>[#<Nyaplot::Plot:0x00000001170858 @properties={:diagrams=>[#<Nyaplot::Diagram:0x000000011704e8 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name, :home], :color=>#<Nyaplot::Color:0x000000015dac18 @source=[\"rgb(251,180,174)\", \"rgb(179,205,227)\", \"rgb(204,235,197)\", \"rgb(222,203,228)\", \"rgb(254,217,166)\", \"rgb(255,255,204)\", \"rgb(229,216,189)\", \"rgb(253,218,236)\", \"rgb(242,242,242)\"]>, :fill_by=>:home}, :data=>\"4415e395-2c04-483a-a794-91e437f82ff9\"}, @xrange=[0.3776941903756781, 3.4024015690223557], @yrange=[0.020049783384994968, 4.697932060531303]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.3776941903756781, 3.4024015690223557], :yrange=>[0.020049783384994968, 4.697932060531303]}}>], :data=>{\"4415e395-2c04-483a-a794-91e437f82ff9\"=>#<Nyaplot::DataFrame:0x000000011c0f60 @name=\"4415e395-2c04-483a-a794-91e437f82ff9\", @rows=[{:x=>0.3776941903756781, :y=>3.150631669472884, :name=>\"cat0\", :home=>\"Kyoto\"}, {:x=>1.16523539526362, :y=>3.636084983829032, :name=>\"cat1\", :home=>\"London\"}, {:x=>3.4024015690223557, :y=>1.5265781962652962, :name=>\"cat2\", :home=>\"Los Angeles\"}, {:x=>0.6478786205183784, :y=>4.697932060531303, :name=>\"cat3\", :home=>\"Kyoto\"}, {:x=>1.502303692675978, :y=>0.23551205104727635, :name=>\"cat4\", :home=>\"Puretoria\"}, {:x=>0.6186835562297704, :y=>1.5712039108775393, :name=>\"cat5\", :home=>\"Los Angeles\"}, {:x=>2.360417118852578, :y=>3.037560696785177, :name=>\"cat6\", :home=>\"London\"}, {:x=>0.9958851328846746, :y=>3.3965329595925136, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>1.0207006596250006, :y=>0.020049783384994968, :name=>\"cat8\", :home=>\"Kyoto\"}, {:x=>1.8874015058395726, :y=>2.973976083790996, :name=>\"cat9\", :home=>\"Los Angeles\"}]>}, :extension=>[]}>"
404
- ]
405
- },
406
- "execution_count": 9,
202
+ "cell_type": "code",
203
+ "collapsed": false,
204
+ "input": [
205
+ "sc.tooltip_contents([:name])\n",
206
+ "plot.show"
207
+ ],
208
+ "language": "python",
407
209
  "metadata": {},
408
- "output_type": "execute_result"
409
- }
410
- ],
411
- "source": [
412
- "sc.color(colors)\n",
413
- "sc.fill_by(:home)\n",
414
- "plot.show"
415
- ]
416
- },
417
- {
418
- "cell_type": "markdown",
419
- "metadata": {},
420
- "source": [
421
- "Use `shape_by` method to change shape according to value in a column."
422
- ]
423
- },
424
- {
425
- "cell_type": "code",
426
- "execution_count": 10,
427
- "metadata": {
428
- "collapsed": false
429
- },
430
- "outputs": [
210
+ "outputs": [
211
+ {
212
+ "html": [
213
+ "<div id='vis-1ab16562-7747-4b73-81ad-97b947668a26'></div>\n",
214
+ "<script>\n",
215
+ "(function(){\n",
216
+ " var render = function(){\n",
217
+ " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\"]},\"data\":\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.09192346825461384,4.523075237278958],\"yrange\":[0.2724593604033648,4.3849875032095715]}}],\"data\":{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\":[{\"x\":4.484045721238493,\"y\":1.4236755629461113,\"name\":\"cat0\"},{\"x\":0.09192346825461384,\"y\":3.859486471834251,\"name\":\"cat1\"},{\"x\":2.7691211926797203,\"y\":0.2724593604033648,\"name\":\"cat2\"},{\"x\":3.790577538193376,\"y\":4.3849875032095715,\"name\":\"cat3\"},{\"x\":3.075663771695602,\"y\":1.4208854855110642,\"name\":\"cat4\"},{\"x\":1.0768103258740274,\"y\":1.3575402862086254,\"name\":\"cat5\"},{\"x\":1.7266282564027458,\"y\":2.061477073499303,\"name\":\"cat6\"},{\"x\":3.0954512252218382,\"y\":0.3593608483818478,\"name\":\"cat7\"},{\"x\":2.7941521911455696,\"y\":0.4127745317214565,\"name\":\"cat8\"},{\"x\":4.523075237278958,\"y\":2.2397417984244443,\"name\":\"cat9\"}]},\"extension\":[]}\n",
218
+ " Nyaplot.core.parse(model, '#vis-1ab16562-7747-4b73-81ad-97b947668a26');\n",
219
+ " };\n",
220
+ " if(window['Nyaplot']==undefined){\n",
221
+ " window.addEventListener('load_nyaplot', render, false);\n",
222
+ "\treturn;\n",
223
+ " } else {\n",
224
+ " render();\n",
225
+ " }\n",
226
+ "})();\n",
227
+ "</script>\n"
228
+ ],
229
+ "metadata": {},
230
+ "output_type": "pyout",
231
+ "prompt_number": 5,
232
+ "text": [
233
+ "#<Nyaplot::Frame:0xb94a504c @properties={:panes=>[#<Nyaplot::Plot:0xb930e2c4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name]}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.09192346825461384, 4.523075237278958], :yrange=>[0.2724593604033648, 4.3849875032095715]}}>], :data=>{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"=>#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\"}]>}, :extension=>[]}>"
234
+ ]
235
+ }
236
+ ],
237
+ "prompt_number": 5
238
+ },
431
239
  {
432
- "data": {
433
- "text/html": [
434
- "<div id='vis-0cb9431b-8dea-444a-b743-c7bcc109aa10'></div>\n",
435
- "<script>\n",
436
- "(function(){\n",
437
- " var render = function(){\n",
438
- " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"],\"color\":[\"rgb(251,180,174)\",\"rgb(179,205,227)\",\"rgb(204,235,197)\",\"rgb(222,203,228)\",\"rgb(254,217,166)\",\"rgb(255,255,204)\",\"rgb(229,216,189)\",\"rgb(253,218,236)\",\"rgb(242,242,242)\"],\"fill_by\":\"home\",\"shape_by\":\"home\"},\"data\":\"4415e395-2c04-483a-a794-91e437f82ff9\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.3776941903756781,3.4024015690223557],\"yrange\":[0.020049783384994968,4.697932060531303]}}],\"data\":{\"4415e395-2c04-483a-a794-91e437f82ff9\":[{\"x\":0.3776941903756781,\"y\":3.150631669472884,\"name\":\"cat0\",\"home\":\"Kyoto\"},{\"x\":1.16523539526362,\"y\":3.636084983829032,\"name\":\"cat1\",\"home\":\"London\"},{\"x\":3.4024015690223557,\"y\":1.5265781962652962,\"name\":\"cat2\",\"home\":\"Los Angeles\"},{\"x\":0.6478786205183784,\"y\":4.697932060531303,\"name\":\"cat3\",\"home\":\"Kyoto\"},{\"x\":1.502303692675978,\"y\":0.23551205104727635,\"name\":\"cat4\",\"home\":\"Puretoria\"},{\"x\":0.6186835562297704,\"y\":1.5712039108775393,\"name\":\"cat5\",\"home\":\"Los Angeles\"},{\"x\":2.360417118852578,\"y\":3.037560696785177,\"name\":\"cat6\",\"home\":\"London\"},{\"x\":0.9958851328846746,\"y\":3.3965329595925136,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":1.0207006596250006,\"y\":0.020049783384994968,\"name\":\"cat8\",\"home\":\"Kyoto\"},{\"x\":1.8874015058395726,\"y\":2.973976083790996,\"name\":\"cat9\",\"home\":\"Los Angeles\"}]},\"extension\":[]}\n",
439
- " var id_name = '#vis-0cb9431b-8dea-444a-b743-c7bcc109aa10';\n",
440
- " Nyaplot.core.parse(model, id_name);\n",
441
- "\n",
442
- " require(['downloadable'], function(downloadable){\n",
443
- " var svg = d3.select(id_name).select(\"svg\");\n",
444
- "\t if(!svg.empty())\n",
445
- "\t svg.call(downloadable().filename('fig'));\n",
446
- "\t});\n",
447
- " };\n",
448
- " if(window['Nyaplot']==undefined){\n",
449
- " window.addEventListener('load_nyaplot', render, false);\n",
450
- "\treturn;\n",
451
- " } else {\n",
452
- " render();\n",
453
- " }\n",
454
- "})();\n",
455
- "</script>\n"
456
- ],
457
- "text/plain": [
458
- "#<Nyaplot::Frame:0x000000015c16f0 @properties={:panes=>[#<Nyaplot::Plot:0x00000001170858 @properties={:diagrams=>[#<Nyaplot::Diagram:0x000000011704e8 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name, :home], :color=>#<Nyaplot::Color:0x000000015dac18 @source=[\"rgb(251,180,174)\", \"rgb(179,205,227)\", \"rgb(204,235,197)\", \"rgb(222,203,228)\", \"rgb(254,217,166)\", \"rgb(255,255,204)\", \"rgb(229,216,189)\", \"rgb(253,218,236)\", \"rgb(242,242,242)\"]>, :fill_by=>:home, :shape_by=>:home}, :data=>\"4415e395-2c04-483a-a794-91e437f82ff9\"}, @xrange=[0.3776941903756781, 3.4024015690223557], @yrange=[0.020049783384994968, 4.697932060531303]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.3776941903756781, 3.4024015690223557], :yrange=>[0.020049783384994968, 4.697932060531303]}}>], :data=>{\"4415e395-2c04-483a-a794-91e437f82ff9\"=>#<Nyaplot::DataFrame:0x000000011c0f60 @name=\"4415e395-2c04-483a-a794-91e437f82ff9\", @rows=[{:x=>0.3776941903756781, :y=>3.150631669472884, :name=>\"cat0\", :home=>\"Kyoto\"}, {:x=>1.16523539526362, :y=>3.636084983829032, :name=>\"cat1\", :home=>\"London\"}, {:x=>3.4024015690223557, :y=>1.5265781962652962, :name=>\"cat2\", :home=>\"Los Angeles\"}, {:x=>0.6478786205183784, :y=>4.697932060531303, :name=>\"cat3\", :home=>\"Kyoto\"}, {:x=>1.502303692675978, :y=>0.23551205104727635, :name=>\"cat4\", :home=>\"Puretoria\"}, {:x=>0.6186835562297704, :y=>1.5712039108775393, :name=>\"cat5\", :home=>\"Los Angeles\"}, {:x=>2.360417118852578, :y=>3.037560696785177, :name=>\"cat6\", :home=>\"London\"}, {:x=>0.9958851328846746, :y=>3.3965329595925136, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>1.0207006596250006, :y=>0.020049783384994968, :name=>\"cat8\", :home=>\"Kyoto\"}, {:x=>1.8874015058395726, :y=>2.973976083790996, :name=>\"cat9\", :home=>\"Los Angeles\"}]>}, :extension=>[]}>"
459
- ]
460
- },
461
- "execution_count": 10,
240
+ "cell_type": "markdown",
462
241
  "metadata": {},
463
- "output_type": "execute_result"
464
- }
465
- ],
466
- "source": [
467
- "sc.color(colors)\n",
468
- "sc.shape_by(:home)\n",
469
- "plot.show"
470
- ]
471
- },
472
- {
473
- "cell_type": "markdown",
474
- "metadata": {},
475
- "source": [
476
- "## Case 2: Multiple panes"
477
- ]
478
- },
479
- {
480
- "cell_type": "markdown",
481
- "metadata": {},
482
- "source": [
483
- "DataFrame is also useful when visualizing data in multiple panes. Let's create plot from data about mutation. \n",
484
- "First, fetch data from csv file. (All data used in this Tutorial is included in Nyaplot's repository: /examples/notebook/data/*)"
485
- ]
486
- },
487
- {
488
- "cell_type": "code",
489
- "execution_count": 11,
490
- "metadata": {
491
- "collapsed": false
492
- },
493
- "outputs": [
242
+ "source": [
243
+ "Tool-tip can include multiple lines, but the DataFrame has only three columns and that's not enough to add more line to tool-tip. Let's add `home` column to it."
244
+ ]
245
+ },
494
246
  {
495
- "data": {
496
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497
- "<table><tr><th>mutation</th><th>blood</th><th>set1</th><th>set2</th><th>set3</th><th>set12</th><th>set21</th><th>set31</th></tr><tr><td>G>A</td><td>0.0</td><td>0.019230769230769232</td><td>0.0</td><td>0.48214285714285715</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42592592592592593</td><td>0.0</td><td>0.0</td><td>0.375</td><td>0.0</td><td>0.0</td></tr><tr><td>C>G</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.525</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.1935483870967742</td><td>0.0</td><td>0.0</td><td>0.4666666666666667</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.08333333333333333</td><td>0.0</td><td>0.0</td><td>0.5161290322580645</td><td>0.0</td></tr><tr><td>G>T</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4444444444444444</td><td>0.0</td><td>0.0</td></tr><tr><td>C>G</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.03333333333333333</td><td>0.0</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td></tr><tr><td>A>C</td><td>0.0</td><td>0.6153846153846154</td><td>0.0</td><td>0.0</td><td>0.5925925925925926</td><td>0.0</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.32</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4230769230769231</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.525</td><td>0.0</td><td>0.0</td><td>0.5277777777777778</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.5</td><td>0.03225806451612903</td></tr><tr><td>T>C</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.3793103448275862</td></tr><tr><td>C>T</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.45714285714285713</td><td>0.0</td><td>0.0</td><td>0.46875</td></tr><tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr><tr><td>A>T</td><td>0.0</td><td>0.4716981132075472</td><td>0.0</td><td>0.014492753623188406</td><td>0.3142857142857143</td><td>0.0</td><td>0.0</td></tr></table>"
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:set2=>0.0, :set3=>0.5365853658536586, :set12=>0.0, :set21=>0.0, :set31=>0.5172413793103449}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.5238095238095238, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, :set31=>0.32}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.6388888888888888, :set12=>0.0, :set21=>0.0, :set31=>0.5416666666666666}, {:mutation=>\"T>C\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.68, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.4716981132075472, :set2=>0.0, :set3=>0.014492753623188406, :set12=>0.3142857142857143, :set21=>0.0, :set31=>0.0}]>"
501
- ]
502
- },
503
- "execution_count": 11,
247
+ "cell_type": "code",
248
+ "collapsed": false,
249
+ "input": [
250
+ "address = ['London', 'Kyoto', 'Los Angeles', 'Puretoria']\n",
251
+ "home = Array.new(10,'').map{|d| address.clone.sample}\n",
252
+ "df.home = home\n",
253
+ "df"
254
+ ],
255
+ "language": "python",
504
256
  "metadata": {},
505
- "output_type": "execute_result"
506
- }
507
- ],
508
- "source": [
509
- "path = File.expand_path(\"../data/first.tab\", __FILE__)\n",
510
- "df = Nyaplot::DataFrame.from_csv(path, sep=\"\\t\")"
511
- ]
512
- },
513
- {
514
- "cell_type": "markdown",
515
- "metadata": {},
516
- "source": [
517
- "Now I want to plot **SET1** column, but it contains many zero cells. Then filter them out."
518
- ]
519
- },
520
- {
521
- "cell_type": "code",
522
- "execution_count": 12,
523
- "metadata": {
524
- "collapsed": false
525
- },
526
- "outputs": [
257
+ "outputs": [
258
+ {
259
+ "html": [
260
+ "<table><tr><th>x</th><th>y</th><th>name</th><th>home</th></tr><tr><td>4.484045721238493</td><td>1.4236755629461113</td><td>cat0</td><td>Puretoria</td></tr><tr><td>0.09192346825461384</td><td>3.859486471834251</td><td>cat1</td><td>London</td></tr><tr><td>2.7691211926797203</td><td>0.2724593604033648</td><td>cat2</td><td>London</td></tr><tr><td>3.790577538193376</td><td>4.3849875032095715</td><td>cat3</td><td>London</td></tr><tr><td>3.075663771695602</td><td>1.4208854855110642</td><td>cat4</td><td>Kyoto</td></tr><tr><td>1.0768103258740274</td><td>1.3575402862086254</td><td>cat5</td><td>Kyoto</td></tr><tr><td>1.7266282564027458</td><td>2.061477073499303</td><td>cat6</td><td>Puretoria</td></tr><tr><td>3.0954512252218382</td><td>0.3593608483818478</td><td>cat7</td><td>Puretoria</td></tr><tr><td>2.7941521911455696</td><td>0.4127745317214565</td><td>cat8</td><td>Los Angeles</td></tr><tr><td>4.523075237278958</td><td>2.2397417984244443</td><td>cat9</td><td>Los Angeles</td></tr></table>"
261
+ ],
262
+ "metadata": {},
263
+ "output_type": "pyout",
264
+ "prompt_number": 6,
265
+ "text": [
266
+ "#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\", :home=>\"Puretoria\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\", :home=>\"London\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\", :home=>\"London\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\", :home=>\"London\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\", :home=>\"Kyoto\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\", :home=>\"Kyoto\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\", :home=>\"Puretoria\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\", :home=>\"Los Angeles\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\", :home=>\"Los Angeles\"}]>"
267
+ ]
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+ }
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+ ],
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+ "prompt_number": 6
271
+ },
527
272
  {
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- "data": {
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- "<table><tr><th>mutation</th><th>blood</th><th>set1</th><th>set2</th><th>set3</th><th>set12</th><th>set21</th><th>set31</th></tr><tr><td>G>A</td><td>0.0</td><td>0.019230769230769232</td><td>0.0</td><td>0.48214285714285715</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42592592592592593</td><td>0.0</td><td>0.0</td><td>0.375</td><td>0.0</td><td>0.0</td></tr><tr><td>A>C</td><td>0.0</td><td>0.6153846153846154</td><td>0.0</td><td>0.0</td><td>0.5925925925925926</td><td>0.0</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.525</td><td>0.0</td><td>0.0</td><td>0.5277777777777778</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.45652173913043476</td><td>0.0</td><td>0.0</td><td>0.43478260869565216</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.09803921568627451</td><td>0.0</td><td>0.0</td><td>0.37142857142857144</td><td>0.0</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.5769230769230769</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td><td>0.0</td><td>0.0</td></tr><tr><td>A>G</td><td>0.0</td><td>0.43859649122807015</td><td>0.0</td><td>0.0</td><td>0.5142857142857142</td><td>0.0</td><td>0.0</td></tr><tr><td>T>C</td><td>0.0</td><td>0.5806451612903226</td><td>0.0</td><td>0.0</td><td>0.6341463414634146</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.014705882352941176</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.41935483870967744</td></tr><tr><td>G>A</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td><td>0.5</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.532258064516129</td><td>0.0</td><td>0.0</td><td>0.5227272727272727</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.5652173913043478</td><td>0.0</td><td>0.0</td><td>0.3870967741935484</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.3333333333333333</td><td>0.0</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.4888888888888889</td><td>0.0</td><td>0.0</td><td>0.43243243243243246</td><td>0.0</td><td>0.0</td></tr><tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr><tr><td>A>T</td><td>0.0</td><td>0.4716981132075472</td><td>0.0</td><td>0.014492753623188406</td><td>0.3142857142857143</td><td>0.0</td><td>0.0</td></tr></table>"
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:set12=>0.759493670886076, :set21=>0.5841584158415841, :set31=>0.47126436781609193}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.49206349206349204, :set2=>0.0, :set3=>0.0, :set12=>0.6470588235294118, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>G\", :blood=>0.0, :set1=>0.5370370370370371, :set2=>0.0, :set3=>0.0, :set12=>0.4857142857142857, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.5882352941176471, :set2=>0.0, :set3=>0.0, :set12=>0.3055555555555556, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.4716981132075472, :set2=>0.0, :set3=>0.014492753623188406, :set12=>0.3142857142857143, :set21=>0.0, :set31=>0.0}]>"
534
- ]
535
- },
536
- "execution_count": 12,
273
+ "cell_type": "code",
274
+ "collapsed": false,
275
+ "input": [
276
+ "sc.tooltip_contents([:name, :home])\n",
277
+ "plot.show"
278
+ ],
279
+ "language": "python",
537
280
  "metadata": {},
538
- "output_type": "execute_result"
539
- }
540
- ],
541
- "source": [
542
- "df.filter! {|row| row[:set1] != 0.0}\n",
543
- "df"
544
- ]
545
- },
546
- {
547
- "cell_type": "markdown",
548
- "metadata": {},
549
- "source": [
550
- "Next prepare instance of Nyaplot::Plot as usual. Nyaplot::Plot.filter is a method for adding 'filter box' to the plot."
551
- ]
552
- },
553
- {
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568
- " var id_name = '#vis-97c156f1-6350-4e07-bd1b-3d38d324bcb2';\n",
569
- " Nyaplot.core.parse(model, id_name);\n",
570
- "\n",
571
- " require(['downloadable'], function(downloadable){\n",
572
- " var svg = d3.select(id_name).select(\"svg\");\n",
573
- "\t if(!svg.empty())\n",
574
- "\t svg.call(downloadable().filename('fig'));\n",
575
- "\t});\n",
576
- " };\n",
577
- " if(window['Nyaplot']==undefined){\n",
578
- " window.addEventListener('load_nyaplot', render, false);\n",
579
- "\treturn;\n",
580
- " } else {\n",
581
- " render();\n",
582
- " }\n",
583
- "})();\n",
584
- "</script>\n"
585
- ],
586
- "text/plain": [
587
- "#<Nyaplot::Plot:0x000000015cfed0 @properties={:diagrams=>[#<Nyaplot::Diagram:0x000000015cfcf0 @properties={:type=>:bar, :options=>{:value=>:mutation}, :data=>\"7dc53792-6d5a-4607-ad6d-6937a0567124\"}, @xrange=[\"G>A\", \"C>T\", \"A>C\", \"T>A\", \"A>G\", \"T>C\", \"C>A\", \"A>T\", \"T>G\", \"G>T\", \"G>C\", \"C>G\"], @yrange=[0, 452]>], :options=>{:height=>400, :x_label=>\"Mutation types\", :y_label=>\"Frequency\", :yrange=>[0, 100], :width=>700, :xrange=>[\"G>A\", \"C>T\", \"A>C\", \"T>A\", \"A>G\", \"T>C\", \"C>A\", \"A>T\", \"T>G\", \"G>T\", \"G>C\", \"C>G\"]}}>"
588
- ]
589
- },
590
- "execution_count": 13,
311
+ "cell_type": "markdown",
591
312
  "metadata": {},
592
- "output_type": "execute_result"
593
- }
594
- ],
595
- "source": [
596
- "plot4=Nyaplot::Plot.new\n",
597
- "plot4.add_with_df(df, :histogram, :set1)\n",
598
- "plot4.configure do\n",
599
- " height(400)\n",
600
- " x_label('PNR')\n",
601
- " y_label('Frequency')\n",
602
- " filter({target:'x'})\n",
603
- " yrange([0,130])\n",
604
- "end\n",
605
- "\n",
606
- "plot5=Nyaplot::Plot.new\n",
607
- "plot5.add_with_df(df, :bar, :mutation)\n",
608
- "plot5.configure do\n",
609
- " height(400)\n",
610
- " x_label('Mutation types')\n",
611
- " y_label('Frequency')\n",
612
- " yrange([0,100])\n",
613
- "end"
614
- ]
615
- },
616
- {
617
- "cell_type": "markdown",
618
- "metadata": {},
619
- "source": [
620
- "Then create an instance of Nyaplot::Frame. It can hold multiple plots in it, and it helps them to interact with each other."
621
- ]
622
- },
623
- {
624
- "cell_type": "code",
625
- "execution_count": 14,
626
- "metadata": {
627
- "collapsed": false
628
- },
629
- "outputs": [
313
+ "source": [
314
+ "Then, fill points on the scatter in different colors according to 'home' column. To do so, specify column name by `fill_by` method."
315
+ ]
316
+ },
630
317
  {
631
- "data": {
632
- "text/html": [
633
- "<div id='vis-bfd31510-aaf6-4f84-8c49-83647e8b96d5'></div>\n",
634
- "<script>\n",
635
- "(function(){\n",
636
- " var render = function(){\n",
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638
- " var id_name = '#vis-bfd31510-aaf6-4f84-8c49-83647e8b96d5';\n",
639
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640
- "\n",
641
- " require(['downloadable'], function(downloadable){\n",
642
- " var svg = d3.select(id_name).select(\"svg\");\n",
643
- "\t if(!svg.empty())\n",
644
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645
- "\t});\n",
646
- " };\n",
647
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648
- " window.addEventListener('load_nyaplot', render, false);\n",
649
- "\treturn;\n",
650
- " } else {\n",
651
- " render();\n",
652
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653
- "})();\n",
654
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655
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- },
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- "execution_count": 14,
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+ "collapsed": false,
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+ "input": [
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+ "colors = Nyaplot::Colors.qual"
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+ ],
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+ "language": "python",
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  "metadata": {},
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+ "outputs": [
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+ {
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+ "html": [
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+ "<table><tr><th>rgb(102,194,165)</th><th>rgb(252,141,98)</th><th>rgb(141,160,203)</th><th>rgb(231,138,195)</th><th>rgb(166,216,84)</th><th>rgb(255,217,47)</th><th>rgb(229,196,148)</th><th>rgb(179,179,179)</th></tr><tr><td style=\"background-color:rgb(102,194,165);\">&nbsp;</td><td style=\"background-color:rgb(252,141,98);\">&nbsp;</td><td style=\"background-color:rgb(141,160,203);\">&nbsp;</td><td style=\"background-color:rgb(231,138,195);\">&nbsp;</td><td style=\"background-color:rgb(166,216,84);\">&nbsp;</td><td style=\"background-color:rgb(255,217,47);\">&nbsp;</td><td style=\"background-color:rgb(229,196,148);\">&nbsp;</td><td style=\"background-color:rgb(179,179,179);\">&nbsp;</td></tr></table>"
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+ ],
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+ "metadata": {},
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+ "output_type": "pyout",
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+ "prompt_number": 8,
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+ "text": [
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+ "#<Nyaplot::Color:0xb9793e0c @source=[\"rgb(102,194,165)\", \"rgb(252,141,98)\", \"rgb(141,160,203)\", \"rgb(231,138,195)\", \"rgb(166,216,84)\", \"rgb(255,217,47)\", \"rgb(229,196,148)\", \"rgb(179,179,179)\"]>"
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+ "prompt_number": 8
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+ },
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+ {
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+ "cell_type": "code",
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+ "collapsed": false,
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+ "input": [
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+ "sc.color(colors)\n",
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+ "sc.fill_by(:home)\n",
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+ "plot.show"
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+ ],
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+ "language": "python",
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+ "metadata": {},
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+ "outputs": [
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+ {
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+ "html": [
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+ "<div id='vis-f8bd1e30-15f8-41cd-bd26-ce1b65976a1f'></div>\n",
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+ " var render = function(){\n",
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+ " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"],\"color\":[\"rgb(102,194,165)\",\"rgb(252,141,98)\",\"rgb(141,160,203)\",\"rgb(231,138,195)\",\"rgb(166,216,84)\",\"rgb(255,217,47)\",\"rgb(229,196,148)\",\"rgb(179,179,179)\"],\"fill_by\":\"home\"},\"data\":\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.09192346825461384,4.523075237278958],\"yrange\":[0.2724593604033648,4.3849875032095715]}}],\"data\":{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\":[{\"x\":4.484045721238493,\"y\":1.4236755629461113,\"name\":\"cat0\",\"home\":\"Puretoria\"},{\"x\":0.09192346825461384,\"y\":3.859486471834251,\"name\":\"cat1\",\"home\":\"London\"},{\"x\":2.7691211926797203,\"y\":0.2724593604033648,\"name\":\"cat2\",\"home\":\"London\"},{\"x\":3.790577538193376,\"y\":4.3849875032095715,\"name\":\"cat3\",\"home\":\"London\"},{\"x\":3.075663771695602,\"y\":1.4208854855110642,\"name\":\"cat4\",\"home\":\"Kyoto\"},{\"x\":1.0768103258740274,\"y\":1.3575402862086254,\"name\":\"cat5\",\"home\":\"Kyoto\"},{\"x\":1.7266282564027458,\"y\":2.061477073499303,\"name\":\"cat6\",\"home\":\"Puretoria\"},{\"x\":3.0954512252218382,\"y\":0.3593608483818478,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":2.7941521911455696,\"y\":0.4127745317214565,\"name\":\"cat8\",\"home\":\"Los Angeles\"},{\"x\":4.523075237278958,\"y\":2.2397417984244443,\"name\":\"cat9\",\"home\":\"Los Angeles\"}]},\"extension\":[]}\n",
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+ " Nyaplot.core.parse(model, '#vis-f8bd1e30-15f8-41cd-bd26-ce1b65976a1f');\n",
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+ "\treturn;\n",
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+ "text": [
373
+ "#<Nyaplot::Frame:0xb97cccac @properties={:panes=>[#<Nyaplot::Plot:0xb930e2c4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name, :home], :color=>#<Nyaplot::Color:0xb9793e0c @source=[\"rgb(102,194,165)\", \"rgb(252,141,98)\", \"rgb(141,160,203)\", \"rgb(231,138,195)\", \"rgb(166,216,84)\", \"rgb(255,217,47)\", \"rgb(229,196,148)\", \"rgb(179,179,179)\"]>, :fill_by=>:home}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.09192346825461384, 4.523075237278958], :yrange=>[0.2724593604033648, 4.3849875032095715]}}>], :data=>{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"=>#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\", :home=>\"Puretoria\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\", :home=>\"London\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\", :home=>\"London\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\", :home=>\"London\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\", :home=>\"Kyoto\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\", :home=>\"Kyoto\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\", :home=>\"Puretoria\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\", :home=>\"Los Angeles\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\", :home=>\"Los Angeles\"}]>}, :extension=>[]}>"
374
+ ]
375
+ }
376
+ ],
377
+ "prompt_number": 9
378
+ },
379
+ {
380
+ "cell_type": "markdown",
381
+ "metadata": {},
382
+ "source": [
383
+ "Use `shape_by` method to change shape according to value in a column."
384
+ ]
385
+ },
386
+ {
387
+ "cell_type": "code",
388
+ "collapsed": false,
389
+ "input": [
390
+ "sc.color(colors)\n",
391
+ "sc.shape_by(:home)\n",
392
+ "plot.show"
393
+ ],
394
+ "language": "python",
395
+ "metadata": {},
396
+ "outputs": [
397
+ {
398
+ "html": [
399
+ "<div id='vis-c7f1d672-d5b7-4ba1-b8f8-9e52867f93bf'></div>\n",
400
+ "<script>\n",
401
+ "(function(){\n",
402
+ " var render = function(){\n",
403
+ " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"],\"color\":[\"rgb(102,194,165)\",\"rgb(252,141,98)\",\"rgb(141,160,203)\",\"rgb(231,138,195)\",\"rgb(166,216,84)\",\"rgb(255,217,47)\",\"rgb(229,196,148)\",\"rgb(179,179,179)\"],\"fill_by\":\"home\",\"shape_by\":\"home\"},\"data\":\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.09192346825461384,4.523075237278958],\"yrange\":[0.2724593604033648,4.3849875032095715]}}],\"data\":{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\":[{\"x\":4.484045721238493,\"y\":1.4236755629461113,\"name\":\"cat0\",\"home\":\"Puretoria\"},{\"x\":0.09192346825461384,\"y\":3.859486471834251,\"name\":\"cat1\",\"home\":\"London\"},{\"x\":2.7691211926797203,\"y\":0.2724593604033648,\"name\":\"cat2\",\"home\":\"London\"},{\"x\":3.790577538193376,\"y\":4.3849875032095715,\"name\":\"cat3\",\"home\":\"London\"},{\"x\":3.075663771695602,\"y\":1.4208854855110642,\"name\":\"cat4\",\"home\":\"Kyoto\"},{\"x\":1.0768103258740274,\"y\":1.3575402862086254,\"name\":\"cat5\",\"home\":\"Kyoto\"},{\"x\":1.7266282564027458,\"y\":2.061477073499303,\"name\":\"cat6\",\"home\":\"Puretoria\"},{\"x\":3.0954512252218382,\"y\":0.3593608483818478,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":2.7941521911455696,\"y\":0.4127745317214565,\"name\":\"cat8\",\"home\":\"Los Angeles\"},{\"x\":4.523075237278958,\"y\":2.2397417984244443,\"name\":\"cat9\",\"home\":\"Los Angeles\"}]},\"extension\":[]}\n",
404
+ " Nyaplot.core.parse(model, '#vis-c7f1d672-d5b7-4ba1-b8f8-9e52867f93bf');\n",
405
+ " };\n",
406
+ " if(window['Nyaplot']==undefined){\n",
407
+ " window.addEventListener('load_nyaplot', render, false);\n",
408
+ "\treturn;\n",
409
+ " } else {\n",
410
+ " render();\n",
411
+ " }\n",
412
+ "})();\n",
413
+ "</script>\n"
414
+ ],
415
+ "metadata": {},
416
+ "output_type": "pyout",
417
+ "prompt_number": 10,
418
+ "text": [
419
+ "#<Nyaplot::Frame:0xb98b1348 @properties={:panes=>[#<Nyaplot::Plot:0xb930e2c4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name, :home], :color=>#<Nyaplot::Color:0xb9793e0c @source=[\"rgb(102,194,165)\", \"rgb(252,141,98)\", \"rgb(141,160,203)\", \"rgb(231,138,195)\", \"rgb(166,216,84)\", \"rgb(255,217,47)\", \"rgb(229,196,148)\", \"rgb(179,179,179)\"]>, :fill_by=>:home, :shape_by=>:home}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.09192346825461384, 4.523075237278958], :yrange=>[0.2724593604033648, 4.3849875032095715]}}>], :data=>{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"=>#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\", :home=>\"Puretoria\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\", :home=>\"London\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\", :home=>\"London\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\", :home=>\"London\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\", :home=>\"Kyoto\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\", :home=>\"Kyoto\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\", :home=>\"Puretoria\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\", :home=>\"Los Angeles\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\", :home=>\"Los Angeles\"}]>}, :extension=>[]}>"
420
+ ]
421
+ }
422
+ ],
423
+ "prompt_number": 10
424
+ },
425
+ {
426
+ "cell_type": "heading",
427
+ "level": 2,
428
+ "metadata": {},
429
+ "source": [
430
+ "Case 2: Multiple panes"
431
+ ]
432
+ },
433
+ {
434
+ "cell_type": "markdown",
435
+ "metadata": {},
436
+ "source": [
437
+ "DataFrame is also useful when visualizing data in multiple panes. Let's create plot from data about mutation. \n",
438
+ "First, fetch data from csv file. (All data used in this Tutorial is included in Nyaplot's repository: /examples/notebook/data/*)"
439
+ ]
440
+ },
441
+ {
442
+ "cell_type": "code",
443
+ "collapsed": false,
444
+ "input": [
445
+ "path = File.expand_path(\"../data/first.tab\", __FILE__)\n",
446
+ "df = Nyaplot::DataFrame.from_csv(path, sep=\"\\t\")"
447
+ ],
448
+ "language": "python",
449
+ "metadata": {},
450
+ "outputs": [
451
+ {
452
+ "html": [
453
+ "<table><tr><th>mutation</th><th>blood</th><th>set1</th><th>set2</th><th>set3</th><th>set12</th><th>set21</th><th>set31</th></tr><tr><td>G>A</td><td>0.0</td><td>0.019230769230769232</td><td>0.0</td><td>0.48214285714285715</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42592592592592593</td><td>0.0</td><td>0.0</td><td>0.375</td><td>0.0</td><td>0.0</td></tr><tr><td>C>G</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.525</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.1935483870967742</td><td>0.0</td><td>0.0</td><td>0.4666666666666667</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.08333333333333333</td><td>0.0</td><td>0.0</td><td>0.5161290322580645</td><td>0.0</td></tr><tr><td>G>T</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4444444444444444</td><td>0.0</td><td>0.0</td></tr><tr><td>C>G</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.03333333333333333</td><td>0.0</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td></tr><tr><td>A>C</td><td>0.0</td><td>0.6153846153846154</td><td>0.0</td><td>0.0</td><td>0.5925925925925926</td><td>0.0</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.32</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4230769230769231</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.525</td><td>0.0</td><td>0.0</td><td>0.5277777777777778</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.5</td><td>0.03225806451612903</td></tr><tr><td>T>C</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.3793103448275862</td></tr><tr><td>C>T</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.45714285714285713</td><td>0.0</td><td>0.0</td><td>0.46875</td></tr><tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr><tr><td>A>T</td><td>0.0</td><td>0.4716981132075472</td><td>0.0</td><td>0.014492753623188406</td><td>0.3142857142857143</td><td>0.0</td><td>0.0</td></tr></table>"
454
+ ],
455
+ "metadata": {},
456
+ "output_type": "pyout",
457
+ "prompt_number": 11,
458
+ "text": [
459
+ "#<Nyaplot::DataFrame:0xba532810 @name=\"1c1e8c6a-1256-416b-a45e-961a0eb39bd5\", @rows=[{:mutation=>\"G>A\", :blood=>0.0, :set1=>0.019230769230769232, :set2=>0.0, :set3=>0.48214285714285715, :set12=>0.0, :set21=>0.0, :set31=>0.4782608695652174}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.42592592592592593, :set2=>0.0, :set3=>0.0, :set12=>0.375, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>G\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.525, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.1935483870967742, :set3=>0.0, :set12=>0.0, :set21=>0.4666666666666667, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.08333333333333333, :set3=>0.0, :set12=>0.0, :set21=>0.5161290322580645, :set31=>0.0}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.4444444444444444, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>G\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, :set31=>0.4}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.03333333333333333, :set3=>0.0, :set12=>0.0, :set21=>0.42857142857142855, :set31=>0.0}, {:mutation=>\"A>C\", :blood=>0.0, :set1=>0.6153846153846154, :set2=>0.0, :set3=>0.0, :set12=>0.5925925925925926, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.32, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.4230769230769231, :set31=>0.0}, {:mutation=>\"T>A\", :blood=>0.0, :set1=>0.525, :set2=>0.0, :set3=>0.0, :set12=>0.5277777777777778, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.42857142857142855, :set2=>0.0, :set3=>0.0, :set12=>0.6666666666666666, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.5, :set31=>0.03225806451612903}, {:mutation=>\"T>C\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, :set31=>0.3793103448275862}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.45714285714285713, :set12=>0.0, :set21=>0.0, :set31=>0.46875}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.5142857142857142, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, :set31=>0.43478260869565216}, {:mutation=>\"G>C\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.6857142857142857, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.45652173913043476, :set2=>0.0, :set3=>0.0, :set12=>0.43478260869565216, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.09803921568627451, :set2=>0.0, :set3=>0.0, :set12=>0.37142857142857144, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.52, :set21=>0.0, :set31=>0.0}, {:mutation=>\"T>A\", :blood=>0.0, 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:set2=>0.3333333333333333, :set3=>0.0, :set12=>0.0, :set21=>0.5555555555555556, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.0, :set2=>0.3870967741935484, :set3=>0.0, :set12=>0.0, :set21=>0.3, :set31=>0.0}, {:mutation=>\"T>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.5769230769230769, :set21=>0.0, :set31=>0.0}, {:mutation=>\"T>G\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.4090909090909091, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, :set31=>0.46153846153846156}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.5510204081632653, :set12=>0.0, :set21=>0.0, :set31=>0.375}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.4642857142857143, :set12=>0.0, :set21=>0.0, :set31=>0.40625}, {:mutation=>\"T>C\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.3448275862068966, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.58, :set3=>0.0, :set12=>0.0, :set21=>0.5862068965517241, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.5555555555555556, :set12=>0.0, :set21=>0.0, :set31=>0.5185185185185185}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.021739130434782608, :set2=>0.0, :set3=>0.02631578947368421, :set12=>0.3103448275862069, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>C\", :blood=>0.0, :set1=>0.0, :set2=>0.25, :set3=>0.0, :set12=>0.0, :set21=>0.7741935483870968, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.48484848484848486, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.047619047619047616, :set2=>0.0, :set3=>0.023809523809523808, :set12=>0.759493670886076, :set21=>0.5841584158415841, :set31=>0.47126436781609193}, {:mutation=>\"A>C\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.5833333333333334, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>G\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.5757575757575758, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.5384615384615384, :set12=>0.0, :set21=>0.0, :set31=>0.3333333333333333}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.0, :set2=>0.696969696969697, :set3=>0.0, :set12=>0.0, :set21=>0.5789473684210527, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.0, :set2=>0.08, :set3=>0.0, :set12=>0.0, :set21=>0.5925925925925926, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.37037037037037035, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, :set31=>0.5333333333333333}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.6444444444444445, :set12=>0.0, :set21=>0.0, :set31=>0.4090909090909091}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.2692307692307692, :set12=>0.0, :set21=>0.0, :set31=>0.40625}, {:mutation=>\"T>C\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.5806451612903226, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.49206349206349204, :set2=>0.0, :set3=>0.0, :set12=>0.6470588235294118, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.5238095238095238, :set3=>0.0, :set12=>0.0, :set21=>0.42857142857142855, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.5853658536585366, :set12=>0.0, :set21=>0.0, :set31=>0.5}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.48, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>G\", :blood=>0.0, :set1=>0.5370370370370371, :set2=>0.0, :set3=>0.0, :set12=>0.4857142857142857, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.5882352941176471, :set2=>0.0, :set3=>0.0, :set12=>0.3055555555555556, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>C\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.5365853658536586, :set12=>0.0, :set21=>0.0, :set31=>0.5172413793103449}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.5238095238095238, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, :set31=>0.32}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.6388888888888888, :set12=>0.0, :set21=>0.0, :set31=>0.5416666666666666}, {:mutation=>\"T>C\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.68, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.4716981132075472, :set2=>0.0, :set3=>0.014492753623188406, :set12=>0.3142857142857143, :set21=>0.0, :set31=>0.0}]>"
460
+ ]
461
+ }
462
+ ],
463
+ "prompt_number": 11
464
+ },
465
+ {
466
+ "cell_type": "markdown",
467
+ "metadata": {},
468
+ "source": [
469
+ "Now I want to plot **SET1** column, but it contains many zero cells. Then filter them out."
470
+ ]
471
+ },
472
+ {
473
+ "cell_type": "code",
474
+ "collapsed": false,
475
+ "input": [
476
+ "df.filter! {|row| row[:set1] != 0.0}\n",
477
+ "df"
478
+ ],
479
+ "language": "python",
480
+ "metadata": {},
481
+ "outputs": [
482
+ {
483
+ "html": [
484
+ "<table><tr><th>mutation</th><th>blood</th><th>set1</th><th>set2</th><th>set3</th><th>set12</th><th>set21</th><th>set31</th></tr><tr><td>G>A</td><td>0.0</td><td>0.019230769230769232</td><td>0.0</td><td>0.48214285714285715</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42592592592592593</td><td>0.0</td><td>0.0</td><td>0.375</td><td>0.0</td><td>0.0</td></tr><tr><td>A>C</td><td>0.0</td><td>0.6153846153846154</td><td>0.0</td><td>0.0</td><td>0.5925925925925926</td><td>0.0</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.525</td><td>0.0</td><td>0.0</td><td>0.5277777777777778</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.45652173913043476</td><td>0.0</td><td>0.0</td><td>0.43478260869565216</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.09803921568627451</td><td>0.0</td><td>0.0</td><td>0.37142857142857144</td><td>0.0</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.5769230769230769</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td><td>0.0</td><td>0.0</td></tr><tr><td>A>G</td><td>0.0</td><td>0.43859649122807015</td><td>0.0</td><td>0.0</td><td>0.5142857142857142</td><td>0.0</td><td>0.0</td></tr><tr><td>T>C</td><td>0.0</td><td>0.5806451612903226</td><td>0.0</td><td>0.0</td><td>0.6341463414634146</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.014705882352941176</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.41935483870967744</td></tr><tr><td>G>A</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td><td>0.5</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.532258064516129</td><td>0.0</td><td>0.0</td><td>0.5227272727272727</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.5652173913043478</td><td>0.0</td><td>0.0</td><td>0.3870967741935484</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.3333333333333333</td><td>0.0</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.4888888888888889</td><td>0.0</td><td>0.0</td><td>0.43243243243243246</td><td>0.0</td><td>0.0</td></tr><tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr><tr><td>A>T</td><td>0.0</td><td>0.4716981132075472</td><td>0.0</td><td>0.014492753623188406</td><td>0.3142857142857143</td><td>0.0</td><td>0.0</td></tr></table>"
485
+ ],
486
+ "metadata": {},
487
+ "output_type": "pyout",
488
+ "prompt_number": 12,
489
+ "text": [
490
+ "#<Nyaplot::DataFrame:0xba532810 @name=\"1c1e8c6a-1256-416b-a45e-961a0eb39bd5\", @rows=[{:mutation=>\"G>A\", :blood=>0.0, :set1=>0.019230769230769232, :set2=>0.0, :set3=>0.48214285714285715, :set12=>0.0, :set21=>0.0, :set31=>0.4782608695652174}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.42592592592592593, :set2=>0.0, :set3=>0.0, :set12=>0.375, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>C\", :blood=>0.0, :set1=>0.6153846153846154, :set2=>0.0, :set3=>0.0, :set12=>0.5925925925925926, :set21=>0.0, :set31=>0.0}, {:mutation=>\"T>A\", :blood=>0.0, :set1=>0.525, :set2=>0.0, :set3=>0.0, :set12=>0.5277777777777778, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.42857142857142855, :set2=>0.0, :set3=>0.0, :set12=>0.6666666666666666, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.45652173913043476, :set2=>0.0, :set3=>0.0, :set12=>0.43478260869565216, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.09803921568627451, :set2=>0.0, :set3=>0.0, :set12=>0.37142857142857144, :set21=>0.0, :set31=>0.0}, {:mutation=>\"T>A\", :blood=>0.0, :set1=>0.5769230769230769, :set2=>0.0, :set3=>0.0, :set12=>0.4782608695652174, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>G\", :blood=>0.0, :set1=>0.43859649122807015, :set2=>0.0, :set3=>0.0, :set12=>0.5142857142857142, :set21=>0.0, :set31=>0.0}, {:mutation=>\"T>C\", :blood=>0.0, :set1=>0.5806451612903226, :set2=>0.0, :set3=>0.0, :set12=>0.6341463414634146, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.014705882352941176, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, :set31=>0.41935483870967744}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.6666666666666666, :set2=>0.0, :set3=>0.0, :set12=>0.5, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.532258064516129, :set2=>0.0, :set3=>0.0, :set12=>0.5227272727272727, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.5652173913043478, :set2=>0.0, :set3=>0.0, :set12=>0.3870967741935484, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.42857142857142855, :set2=>0.0, :set3=>0.0, :set12=>0.3333333333333333, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.4888888888888889, :set2=>0.0, :set3=>0.0, :set12=>0.43243243243243246, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.01818181818181818, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, :set31=>0.43478260869565216}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.45098039215686275, :set2=>0.03225806451612903, :set3=>0.0, :set12=>0.5882352941176471, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.5172413793103449, :set2=>0.0, :set3=>0.0, :set12=>0.43333333333333335, :set21=>0.0, :set31=>0.0}, {:mutation=>\"T>C\", :blood=>0.0, :set1=>0.04878048780487805, :set2=>0.0, :set3=>0.019230769230769232, :set12=>0.6060606060606061, :set21=>0.5662650602409639, :set31=>0.6296296296296297}, {:mutation=>\"G>A\", :blood=>0.0, 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:set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.40816326530612246, :set2=>0.0, :set3=>0.0, :set12=>0.45454545454545453, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.48936170212765956, :set2=>0.0, :set3=>0.0, :set12=>0.5172413793103449, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>G\", :blood=>0.0, :set1=>0.4489795918367347, :set2=>0.0, :set3=>0.0, :set12=>0.3870967741935484, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.43243243243243246, :set2=>0.0, :set3=>0.0, :set12=>0.5652173913043478, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>G\", :blood=>0.0, :set1=>0.5208333333333334, :set2=>0.0, :set3=>0.0, :set12=>0.4444444444444444, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.5714285714285714, :set2=>0.0, :set3=>0.0, :set12=>0.47058823529411764, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.5897435897435898, :set2=>0.0, :set3=>0.0, :set12=>0.391304347826087, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.6756756756756757, :set2=>0.0, :set3=>0.0, :set12=>0.42857142857142855, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.4444444444444444, :set2=>0.0, :set3=>0.0, :set12=>0.5806451612903226, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.15789473684210525, :set2=>0.0, :set3=>0.0, :set12=>0.38461538461538464, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.6666666666666666, :set2=>0.0, :set3=>0.0, :set12=>0.46875, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.6170212765957447, :set2=>0.0, :set3=>0.0, :set12=>0.48, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.02040816326530612, :set2=>0.0, :set3=>0.0, :set12=>0.6071428571428571, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>G\", :blood=>0.0, :set1=>0.5555555555555556, :set2=>0.0, :set3=>0.0, :set12=>0.4482758620689655, :set21=>0.0, :set31=>0.0}, {:mutation=>\"T>C\", :blood=>0.0, 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:set12=>0.759493670886076, :set21=>0.5841584158415841, :set31=>0.47126436781609193}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.49206349206349204, :set2=>0.0, :set3=>0.0, :set12=>0.6470588235294118, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>G\", :blood=>0.0, :set1=>0.5370370370370371, :set2=>0.0, :set3=>0.0, :set12=>0.4857142857142857, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.5882352941176471, :set2=>0.0, :set3=>0.0, :set12=>0.3055555555555556, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.4716981132075472, :set2=>0.0, :set3=>0.014492753623188406, :set12=>0.3142857142857143, :set21=>0.0, :set31=>0.0}]>"
491
+ ]
492
+ }
493
+ ],
494
+ "prompt_number": 12
495
+ },
496
+ {
497
+ "cell_type": "markdown",
498
+ "metadata": {},
499
+ "source": [
500
+ "Next prepare instance of Nyaplot::Plot as usual. Nyaplot::Plot.filter is a method for adding 'filter box' to the plot."
501
+ ]
502
+ },
503
+ {
504
+ "cell_type": "code",
505
+ "collapsed": false,
506
+ "input": [
507
+ "plot4=Nyaplot::Plot.new\n",
508
+ "plot4.add_with_df(df, :histogram, :set1)\n",
509
+ "plot4.configure do\n",
510
+ " height(400)\n",
511
+ " x_label('PNR')\n",
512
+ " y_label('Frequency')\n",
513
+ " filter({target:'x'})\n",
514
+ " yrange([0,130])\n",
515
+ "end\n",
516
+ "\n",
517
+ "plot5=Nyaplot::Plot.new\n",
518
+ "plot5.add_with_df(df, :bar, :mutation)\n",
519
+ "plot5.configure do\n",
520
+ " height(400)\n",
521
+ " x_label('Mutation types')\n",
522
+ " y_label('Frequency')\n",
523
+ " yrange([0,100])\n",
524
+ "end"
525
+ ],
526
+ "language": "python",
527
+ "metadata": {},
528
+ "outputs": [
529
+ {
530
+ "html": [
531
+ "<div id='vis-58e5f01f-91cb-4d47-854d-0b171ed563c0'></div>\n",
532
+ "<script>\n",
533
+ "(function(){\n",
534
+ " var render = function(){\n",
535
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536
+ " Nyaplot.core.parse(model, '#vis-58e5f01f-91cb-4d47-854d-0b171ed563c0');\n",
537
+ " };\n",
538
+ " if(window['Nyaplot']==undefined){\n",
539
+ " window.addEventListener('load_nyaplot', render, false);\n",
540
+ "\treturn;\n",
541
+ " } else {\n",
542
+ " render();\n",
543
+ " }\n",
544
+ "})();\n",
545
+ "</script>\n"
546
+ ],
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+ "metadata": {},
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+ "output_type": "pyout",
549
+ "prompt_number": 13,
550
+ "text": [
551
+ "#<Nyaplot::Plot:0xb9a53ee4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb9a53dcc @properties={:type=>:bar, :options=>{:value=>:mutation}, :data=>\"1c1e8c6a-1256-416b-a45e-961a0eb39bd5\"}, @xrange=[\"G>A\", \"C>T\", \"A>C\", \"T>A\", \"A>G\", \"T>C\", \"C>A\", \"A>T\", \"T>G\", \"G>T\", \"G>C\", \"C>G\"], @yrange=[0, 452]>], :options=>{:height=>400, :x_label=>\"Mutation types\", :y_label=>\"Frequency\", :yrange=>[0, 100], :width=>700, :xrange=>[\"G>A\", \"C>T\", \"A>C\", \"T>A\", \"A>G\", \"T>C\", \"C>A\", \"A>T\", \"T>G\", \"G>T\", \"G>C\", \"C>G\"]}}>"
552
+ ]
553
+ }
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+ ],
555
+ "prompt_number": 13
556
+ },
557
+ {
558
+ "cell_type": "markdown",
559
+ "metadata": {},
560
+ "source": [
561
+ "Then create an instance of Nyaplot::Frame. It can hold multiple plots in it, and it helps them to interact with each other."
562
+ ]
563
+ },
564
+ {
565
+ "cell_type": "code",
566
+ "collapsed": false,
567
+ "input": [
568
+ "frame = Nyaplot::Frame.new\n",
569
+ "frame.add(plot4)\n",
570
+ "frame.add(plot5)\n",
571
+ "frame.show"
572
+ ],
573
+ "language": "python",
574
+ "metadata": {},
575
+ "outputs": [
576
+ {
577
+ "html": [
578
+ "<div id='vis-0dfa9339-e9d0-43fd-8e20-a89a2e81ed2b'></div>\n",
579
+ "<script>\n",
580
+ "(function(){\n",
581
+ " var render = function(){\n",
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597
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598
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+ }
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+ ],
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+ "prompt_number": 14
663
603
  }
664
604
  ],
665
- "source": [
666
- "frame = Nyaplot::Frame.new\n",
667
- "frame.add(plot4)\n",
668
- "frame.add(plot5)\n",
669
- "frame.show"
670
- ]
605
+ "metadata": {}
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606
  }
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- ],
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- "metadata": {
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- "kernelspec": {
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- "display_name": "Ruby",
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- "language": "ruby",
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- "name": "ruby"
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- },
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- "version": "2.1.2"
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- "nbformat_minor": 0
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- }
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+ ]
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+ }