nuva 0.2.1 → 0.3.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Changelog.md +13 -0
- data/lib/nuva/queries.rb +96 -83
- data/lib/nuva/repositories/valence_repository.rb +1 -1
- data/lib/nuva/repository.rb +11 -16
- data/lib/nuva/version.rb +1 -1
- data/lib/nuva.rb +89 -74
- metadata +1 -1
checksums.yaml
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metadata.gz: 6005455d2bcaf93b115e51352c8d22dda90954c086f0ed5d378f9bbafcca2cf9
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data.tar.gz: 7430a09df08aab2786ea0433a51ebc86ca77a2718b26532a7591bed2edb660a3
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metadata.gz: c5852e5006e7de76aed2a716c8559398eba7eaf67df19ae4bc17b449675b89fee3f4ce0201c3861a80f1de36a3d6fc4d77db237ab6754e7c0ee1a7520cb8c600
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data.tar.gz: 1a67a955a8dc79d3219cefdbb7432ce4ad1312356a77e8a13a437a35228739e099bbc11b8dd2462ee6ae157b0349cab88f80e4b1f6e11eaa719ae42d0703e556
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data/Changelog.md
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@@ -5,6 +5,19 @@ All notable changes to this project will be documented in this file.
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [0.3.1] - 2025-01-17
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### Changed
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- Add 'Query' suffix all query classes
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- Inherit from common Query class with sensible implementation of `inspect` method
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## [0.3.0] - 2025-01-17
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### Added
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- Support finding vaccines/diseases/valences by string uuid (not just symbol uuid)
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## [0.2.1] - 2025-01-17
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### Added
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data/lib/nuva/queries.rb
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# frozen_string_literal: true
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require
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require "fuzzy_match"
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module Nuva
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module Queries
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class
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class Query
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def inspect
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"#<#{self.class.name}>"
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end
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end
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class ValencesByVaccineQuery < Query
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def initialize(repositories)
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hash = Hash.new { |h, k| h[k] = [] }
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@valences_by_vaccine_id =
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@valences_by_vaccine_id =
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repositories[:valences]
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.all
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.reduce(hash) do |acc, valence|
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valence.vaccine_ids.each do |vaccine_id|
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acc[vaccine_id] << valence
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end
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acc
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end
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end
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def call(vaccine)
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end
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end
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class
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class VaccinesByValenceQuery < Query
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def initialize(repositories)
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hash = Hash.new { |h, k| h[k] = [] }
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@vaccines_by_valence_id =
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@vaccines_by_valence_id =
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repositories[:vaccines]
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.all
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.reduce(hash) do |acc, vaccine|
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vaccine.valence_ids.each do |valence_id|
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acc[valence_id] << vaccine
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end
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acc
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end
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end
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def call(valence)
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end
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end
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class
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class VaccinesByDiseaseQuery < Query
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def initialize(repositories)
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hash = Hash.new { |h, k| h[k] = [] }
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@vaccines_by_disease_id =
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@vaccines_by_disease_id =
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repositories[:valences]
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.all
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.reduce(hash) do |acc, valence|
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valence.disease_ids.each do |disease_id|
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valence.vaccine_ids.each do |vaccine_id|
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acc[disease_id] << repositories[:vaccines].find(vaccine_id)
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end
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end
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acc
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end
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end
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acc
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end
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end
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def call(disease)
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end
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end
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class
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class ValencesByDiseaseQuery < Query
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def initialize(repositories)
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hash = Hash.new { |h, k| h[k] = [] }
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@valences_by_disease_id =
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@valences_by_disease_id =
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repositories[:valences]
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.all
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.reduce(hash) do |acc, valence|
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valence.disease_ids.each do |disease_id|
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acc[disease_id] << valence
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end
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acc
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end
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end
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def call(disease)
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end
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end
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class
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class DiseasesByVaccineQuery < Query
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def initialize(repositories)
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hash = Hash.new { |h, k| h[k] = [] }
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@diseases_by_vaccine_id =
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@diseases_by_vaccine_id =
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repositories[:valences]
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.all
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.reduce(hash) do |acc, valence|
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valence.vaccine_ids.each do |vaccine_id|
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valence.disease_ids.each do |disease_id|
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acc[vaccine_id] << repositories[:diseases].find(disease_id)
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end
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end
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acc
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end
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end
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acc
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end
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end
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def call(vaccine)
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end
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end
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class DiseasesByValenceQuery < Query
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def initialize(repositories)
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hash = Hash.new { |h, k| h[k] = [] }
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@diseases_by_valence_id =
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@diseases_by_valence_id =
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repositories[:diseases]
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.all
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.reduce(hash) do |acc, disease|
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disease.valence_ids.each do |valence_id|
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acc[valence_id] << disease
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end
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acc
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end
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end
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def call(valence)
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end
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end
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class VaccineFuzzySearchQuery < Query
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def initialize(repositories)
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@engine =
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v.name
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})
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@engine =
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FuzzyMatch.new(repositories.vaccines.all, read: ->(v) { v.name })
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end
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def call(pattern)
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end
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end
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# lookupEquivalentVaccines(vaccine: Vaccine): Vaccine[];
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# lookupSpecializedVaccines(vaccine: Vaccine): Vaccine[];
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# lookupGeneralizedVaccines(vaccine: Vaccine): Vaccine[];
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# allNomenclatures(): string[];
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# allCodeByNomenclature(): {
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# [nomenclature: string]: Code[];
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# };
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class LookupVaccineByCode
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class LookupVaccineByCodeQuery < Query
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def initialize(repositories)
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@vaccines = repositories.vaccines
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end
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def call(code)
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@vaccines.all.find do |vac|
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"NUVA-#{vac.code}" == code || vac.codes.any?
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"NUVA-#{vac.code}" == code || vac.codes.any? { |x| x.value == code }
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end
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end
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end
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class LookupEquivalentVaccinesQuery < Query
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def initialize(repositories)
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@vaccines = repositories.vaccines
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end
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def call(vaccine)
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vids = vaccine.valence_ids.sort
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@vaccines.all.filter do |v|
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v.valence_ids.length == vids.length && v.id != vaccine.id &&
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v.valence_ids.length == vids.length && v.id != vaccine.id &&
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vids == v.valence_ids.sort
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end
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end
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end
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class LookupGeneralizedVaccinesQuery < Query
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def initialize(repositories, valencesByVaccine)
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@vaccines = repositories.vaccines
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@valences = repositories.valences
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def call(vaccine)
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targetValences = @valencesByVaccine.(vaccine)
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list =
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list =
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@vaccines.all.filter do |candidate|
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next if candidate.id == vaccine.id || !candidate.generic
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@valencesByVaccine
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.(candidate)
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.all? do |candidateValence|
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targetValences.any? do |targetValence|
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parent_of?(candidateValence, targetValence)
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end
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end
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end
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list.sort_by do |v| -@valencesByVaccine.(v).length end
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list.sort_by { |v| -@valencesByVaccine.(v).length }
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end
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private def child_of?(valence, parent)
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return true if valence.id == parent.id
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valence = @valences.find(valence.parent_id)
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end
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false
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end
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end
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end
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class
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class AllNomenclaturesQuery < Query
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def initialize(repositories)
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@vaccines = repositories.vaccines
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end
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def call
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(@vaccines.all.flat_map
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v.codes.map(&:nomenclature)
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end).uniq
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(@vaccines.all.flat_map { |v| v.codes.map(&:nomenclature) }).uniq
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end
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end
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class
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class AllCodeByNomenclatureQuery < Query
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def initialize(repositories)
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@vaccines = repositories.vaccines
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end
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@vaccines
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.all
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.flat_map(&:codes)
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.reduce(Hash.new { |hash, key| hash[key] = [] })
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|hash, code|
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.reduce(Hash.new { |hash, key| hash[key] = [] }) do |hash, code|
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hash[code.nomenclature] << code.value
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hash
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end
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.map { |key, value| [key, value.uniq] }
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.to_h
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end
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end
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end
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end
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data/lib/nuva/repository.rb
CHANGED
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module Nuva
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class Repository
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attr_reader :
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|
5
|
+
attr_reader :all
|
|
6
6
|
|
|
7
7
|
def initialize(data)
|
|
8
|
-
@
|
|
9
|
-
@
|
|
10
|
-
|
|
8
|
+
@count = data.count
|
|
9
|
+
@all = data
|
|
10
|
+
@index = {}
|
|
11
|
+
data.each do |item|
|
|
12
|
+
@index[item.code] = item
|
|
13
|
+
@index[item.id.to_sym] = item
|
|
14
|
+
@index[item.id.to_s] = item
|
|
15
|
+
end
|
|
11
16
|
end
|
|
12
17
|
|
|
13
18
|
def find(id_or_code)
|
|
14
|
-
@
|
|
15
|
-
end
|
|
16
|
-
|
|
17
|
-
def all
|
|
18
|
-
@data.values
|
|
19
|
+
@index[id_or_code]
|
|
19
20
|
end
|
|
20
21
|
|
|
21
22
|
def by_ids(ids)
|
|
@@ -23,13 +24,7 @@ module Nuva
|
|
|
23
24
|
end
|
|
24
25
|
|
|
25
26
|
def inspect
|
|
26
|
-
"#<#{self.class.name} count=#{
|
|
27
|
-
end
|
|
28
|
-
|
|
29
|
-
private
|
|
30
|
-
|
|
31
|
-
def index_array_by_id(array)
|
|
32
|
-
array.each_with_object({}) { |item, acc| acc[item.id] = item }
|
|
27
|
+
"#<#{self.class.name} count=#{@count}>"
|
|
33
28
|
end
|
|
34
29
|
end
|
|
35
30
|
end
|
data/lib/nuva/version.rb
CHANGED
data/lib/nuva.rb
CHANGED
|
@@ -1,80 +1,95 @@
|
|
|
1
1
|
# frozen_string_literal: true
|
|
2
2
|
|
|
3
|
-
require_relative
|
|
4
|
-
require_relative
|
|
5
|
-
require_relative
|
|
6
|
-
require_relative
|
|
7
|
-
require
|
|
8
|
-
require
|
|
9
|
-
require
|
|
3
|
+
require_relative "nuva/version"
|
|
4
|
+
require_relative "nuva/NuvaDatabase_pb"
|
|
5
|
+
require_relative "nuva/repository"
|
|
6
|
+
require_relative "nuva/queries"
|
|
7
|
+
require "net/http"
|
|
8
|
+
require "json"
|
|
9
|
+
require "ostruct"
|
|
10
10
|
|
|
11
11
|
module Nuva
|
|
12
|
-
|
|
13
|
-
|
|
14
|
-
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
|
|
26
|
-
|
|
27
|
-
|
|
28
|
-
|
|
29
|
-
|
|
30
|
-
|
|
31
|
-
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
|
|
39
|
-
|
|
40
|
-
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
req = ::Net::HTTP::Get.new latest_version_uri
|
|
53
|
-
|
|
54
|
-
res = http.request req
|
|
55
|
-
res.value
|
|
56
|
-
|
|
57
|
-
manifest = JSON.parse(res.body)
|
|
58
|
-
|
|
59
|
-
dump_hash = manifest['dump_hash']
|
|
60
|
-
|
|
61
|
-
# Fetch latest database
|
|
62
|
-
dump_uri = latest_version_uri.dup
|
|
63
|
-
dump_uri.path = "/proto/#{dump_hash}_#{lang}.db"
|
|
64
|
-
|
|
65
|
-
req = ::Net::HTTP::Get.new dump_uri
|
|
66
|
-
|
|
67
|
-
res = http.request req
|
|
68
|
-
res.value
|
|
69
|
-
|
|
70
|
-
# The return value of the block is returned by the start method
|
|
71
|
-
::Nuva::Nuva.new(::Nuva::NuvaDatabase.decode(res.body))
|
|
72
|
-
end
|
|
73
|
-
|
|
74
|
-
end
|
|
75
|
-
|
|
76
|
-
def self.load_from_file(path)
|
|
77
|
-
Nuva.new(NuvaDatabase.decode(File.read(path)))
|
|
78
|
-
end
|
|
12
|
+
class Nuva
|
|
13
|
+
attr_reader :repositories
|
|
14
|
+
attr_reader :queries
|
|
15
|
+
|
|
16
|
+
def initialize(db)
|
|
17
|
+
@db = db
|
|
18
|
+
|
|
19
|
+
@repositories = OpenStruct.new
|
|
20
|
+
@repositories.vaccines = VaccineRepository.new db.vaccines
|
|
21
|
+
@repositories.valences = ValenceRepository.new db.valences
|
|
22
|
+
@repositories.diseases = DiseaseRepository.new db.diseases
|
|
23
|
+
@repositories.freeze
|
|
24
|
+
|
|
25
|
+
@queries = OpenStruct.new
|
|
26
|
+
@queries.valences_by_vaccine =
|
|
27
|
+
::Nuva::Queries::ValencesByVaccineQuery.new @repositories
|
|
28
|
+
@queries.vaccines_by_valence =
|
|
29
|
+
::Nuva::Queries::VaccinesByValenceQuery.new @repositories
|
|
30
|
+
@queries.vaccines_by_disease =
|
|
31
|
+
::Nuva::Queries::VaccinesByDiseaseQuery.new @repositories
|
|
32
|
+
@queries.valences_by_disease =
|
|
33
|
+
::Nuva::Queries::ValencesByDiseaseQuery.new @repositories
|
|
34
|
+
@queries.diseases_by_vaccine =
|
|
35
|
+
::Nuva::Queries::DiseasesByVaccineQuery.new @repositories
|
|
36
|
+
@queries.diseases_by_valence =
|
|
37
|
+
::Nuva::Queries::DiseasesByValenceQuery.new @repositories
|
|
38
|
+
@queries.vaccine_fuzzy_search =
|
|
39
|
+
::Nuva::Queries::VaccineFuzzySearchQuery.new @repositories
|
|
40
|
+
@queries.lookup_vaccine_by_code =
|
|
41
|
+
::Nuva::Queries::LookupVaccineByCodeQuery.new @repositories
|
|
42
|
+
@queries.lookup_equivalent_vaccines =
|
|
43
|
+
::Nuva::Queries::LookupEquivalentVaccinesQuery.new @repositories
|
|
44
|
+
@queries.lookup_generalized_vaccines =
|
|
45
|
+
::Nuva::Queries::LookupGeneralizedVaccinesQuery.new @repositories,
|
|
46
|
+
@queries.valences_by_vaccine
|
|
47
|
+
@queries.all_nomenclatures =
|
|
48
|
+
::Nuva::Queries::AllNomenclaturesQuery.new @repositories
|
|
49
|
+
@queries.all_code_by_nomenclature =
|
|
50
|
+
::Nuva::Queries::AllCodeByNomenclatureQuery.new @repositories
|
|
51
|
+
@queries.freeze
|
|
79
52
|
end
|
|
53
|
+
|
|
54
|
+
def version
|
|
55
|
+
@db.version
|
|
56
|
+
end
|
|
57
|
+
|
|
58
|
+
def self.load(lang = "en")
|
|
59
|
+
latest_version_uri =
|
|
60
|
+
URI "https://cdnnuva.mesvaccins.net/versions/last.json"
|
|
61
|
+
|
|
62
|
+
::Net::HTTP.start(
|
|
63
|
+
latest_version_uri.host,
|
|
64
|
+
latest_version_uri.port,
|
|
65
|
+
use_ssl: latest_version_uri.scheme == "https"
|
|
66
|
+
) do |http|
|
|
67
|
+
# Fetch version manifest
|
|
68
|
+
req = ::Net::HTTP::Get.new latest_version_uri
|
|
69
|
+
|
|
70
|
+
res = http.request req
|
|
71
|
+
res.value
|
|
72
|
+
|
|
73
|
+
manifest = JSON.parse(res.body)
|
|
74
|
+
|
|
75
|
+
dump_hash = manifest["dump_hash"]
|
|
76
|
+
|
|
77
|
+
# Fetch latest database
|
|
78
|
+
dump_uri = latest_version_uri.dup
|
|
79
|
+
dump_uri.path = "/proto/#{dump_hash}_#{lang}.db"
|
|
80
|
+
|
|
81
|
+
req = ::Net::HTTP::Get.new dump_uri
|
|
82
|
+
|
|
83
|
+
res = http.request req
|
|
84
|
+
res.value
|
|
85
|
+
|
|
86
|
+
# The return value of the block is returned by the start method
|
|
87
|
+
::Nuva::Nuva.new(::Nuva::NuvaDatabase.decode(res.body))
|
|
88
|
+
end
|
|
89
|
+
end
|
|
90
|
+
|
|
91
|
+
def self.load_from_file(path)
|
|
92
|
+
Nuva.new(NuvaDatabase.decode(File.read(path)))
|
|
93
|
+
end
|
|
94
|
+
end
|
|
80
95
|
end
|