numo-gsl 0.1.1 → 0.1.2

checksums.yaml

@@ -1,7 +1,7 @@
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data/README.md

@@ -1,6 +1,6 @@
 # GSL interface for Ruby with Numo::NArray
 
-[GitHub](https://github.com/ruby-numo/gsl) |
+[GitHub](https://github.com/ruby-numo/numo-gsl) |
 [RubyGems](https://rubygems.org/gems/numo-gsl)
 
 * [GSL - GNU Scientific Library](http://www.gnu.org/software/gsl/) - version >=2.0 and <=2.3.
@@ -72,7 +72,7 @@ $ gem install numo-gsl
 If you're familiar with Docker, the following commands should work in most cases:
 
 ```
-git clone https://github.com/ruby-numo/gsl
+git clone https://github.com/ruby-numo/numo-gsl
 cd gsl
 docker build -t numogsl .
 docker run -d -p 8888:8888 numogsl start-notebook.sh --NotebookApp.token=''

data/ext/numo/gsl/cdf/erbpp_cdf.rb

@@ -1,5 +1,4 @@
 require_relative "../gen/erbpp_gsl"
-require "erbpp/line_number"
 
 cdf_methods = ErbppGsl.read_func.select do |h|
   h[:func_name] =~ /^gsl_cdf_(\w+)$/ &&
@@ -21,6 +20,7 @@ class DefCdf < DefGslModule
 end
 
 DefLib.new do
+  set line_number: true
   set erb_dir: "../gen/tmpl"
   set erb_suffix: ".c"
 

data/ext/numo/gsl/const/erbpp_const.rb

@@ -1,11 +1,9 @@
-require_relative "../gen/erbpp2"
 require_relative "../gen/erbpp_gsl"
-require "erbpp/line_number"
-
 
 const_list = ErbppGsl.read_const
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
 

data/ext/numo/gsl/extconf_gsl.rb

@@ -1,6 +1,7 @@
 require 'rbconfig.rb'
 require 'numo/narray'
 require 'mkmf'
+require_relative './mkmf_gsl'
 
 # configure options: --with-gsl-lib=path
 #dir_config("gsl")
@@ -8,7 +9,8 @@ require 'mkmf'
 # check gsl-config command
 print "checking for gsl-config... "
 begin
-  gsl_libs = `gsl-config --libs`
+  # MinGW fails to invoke shell script command (gsl-config)
+  gsl_libs = `sh -c '\`which gsl-config\` --libs'`.chomp
 rescue
   puts "no"
   exit 1
@@ -32,13 +34,22 @@ libs.each do |x|
 end
 
 # GSL include files
-$INCFLAGS = [`gsl-config --cflags`.chomp,$INCFLAGS].join(" ")
+gsl_cflags = `sh -c '\`which gsl-config\` --cflags'`.chomp
+$INCFLAGS = [gsl_cflags,$INCFLAGS].join(" ")
 
 # check narray.h
-$LOAD_PATH.each do |x|
-  if File.exist? File.join(x,'numo','numo/narray.h')
-    $INCFLAGS = "-I#{x}/numo " + $INCFLAGS
-    break
+find_narray_h
+if !have_header("numo/narray.h")
+  puts "Header numo/narray.h was not found. Give pathname as follows:
+  % ruby extconf.rb --with-narray-include=narray_h_dir"
+  exit(1)
+end
+
+# check libnarray.a
+if RUBY_PLATFORM =~ /mswin|cygwin|mingw/
+  find_libnarray_a
+  unless have_library("narray","nary_new")
+    puts "libnarray.a not found"
+    exit(1)
   end
 end
-exit 1 unless have_header('numo/narray.h')

data/ext/numo/gsl/fit/erbpp_fit.rb

@@ -1,6 +1,4 @@
-require_relative "../gen/func_parser"
 require_relative "../gen/erbpp_gsl"
-require "erbpp/line_number"
 
 fit_list = ErbppGsl.read_func
 
@@ -51,6 +49,7 @@ class Fit < DefModuleFunction
 end
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/ext/numo/gsl/gen/erbln.rb

@@ -0,0 +1,132 @@
+require 'erb'
+
+class ErbPP
+
+  class CountLnString < String
+
+    def initialize(filename)
+      @filename = filename
+      @lnchar = "\n"
+      @buf = ""
+      @str = ""
+      @countln = 1
+      @current = 1
+      super("\n"+report_line)
+    end
+
+    def report_line
+      "#line #{@current} \"#{@filename}\"\n"
+    end
+
+    def concat0(s)
+      ln(caller[0])
+      @buf.concat(s)
+      @str.concat(s)
+    end
+
+    def concat1(s)
+      ln(caller[0])
+      @buf.concat(s)
+    end
+
+    def ln(status=nil)
+      case status
+      when /:(\d+):/
+        n = $1.to_i
+      else
+        n = status.to_i
+      end
+      return if n == @current
+      if @current != @countln || @postpone
+        if /\A\s*\z/ =~ @str || /\A#line / =~ @buf
+          @postpone = true
+        elsif @in_comment
+          @postpone = false
+        else
+          if self[-1] != "\n"
+            concat("\n")
+          end
+          concat(report_line)
+          @postpone = false
+        end
+      end
+      concat(@buf)
+
+      b = @buf.gsub(/".*?(?<!\\)"/,'""')
+      /^.*(\/\*)(.*?)$/ =~ b
+      x = $2
+      /^.*(\*\/)(.*?)$/ =~ b
+      y = $2
+      if x
+        if y
+          if x.size < y.size
+            #:in_comment
+            @in_comment = true
+          else
+            #:out_comment
+            @in_comment = false
+          end
+        else
+          #:in_comment
+          @in_comment = true
+        end
+      else
+        if y
+          #:out_comment
+          @in_comment = false
+        else
+          #:keep
+        end
+      end
+
+      @countln = @current + @buf.count(@lnchar)
+      @current = n
+      @buf = ""
+      @str = ""
+    end
+
+    def d(s)
+      p [s, [x,y], r]
+      r
+    end
+
+    def final
+      ln(caller[0])
+      concat(@buf)
+    end
+
+  end
+
+  class ERBLN
+
+    def initialize(str, filename, trim_mode=nil, eoutvar='_erbout')
+      @filename = filename
+      compiler = ERB::Compiler.new(trim_mode)
+      set_eoutvar(compiler, eoutvar)
+      @src, @enc = *compiler.compile(str)
+    end
+
+    def set_eoutvar(compiler, eoutvar = '_erbout')
+      compiler.put_cmd = "#{eoutvar}.concat0"
+      compiler.insert_cmd = "#{eoutvar}.concat1"
+      compiler.pre_cmd = ["#{eoutvar} = CountLnString.new(#{@filename.inspect})"]
+      compiler.post_cmd = ["#{eoutvar}.final"]
+    end
+
+    def run(b)
+      print self.result(b)
+    end
+
+    def result(b)
+      #open("tmpout","a") do |f|
+      #  f.puts "\n#file:#{@filename}"
+      #  f.puts @src
+      #end
+      eval(@src, b, (@filename || '(erb)'), 0)
+    end
+
+    #require "fileutils"
+    #FileUtils.rm_f("tmpout")
+  end
+
+end

data/ext/numo/gsl/gen/erbpp2.rb

@@ -1,4 +1,5 @@
 require "erb"
+require_relative "erbln"
 
 class ErbPP
 
@@ -66,8 +67,12 @@ class ErbPP
       Dir.glob(x).each do |dir|
         path = File.join(dir,file)
         if File.exist?(path)
-          erb = ERB.new(File.read(path), safe_level, trim_mode)
-          erb.filename = path
+          if get(:line_number)
+            erb = ERBLN.new(File.read(path), path, trim_mode)
+          else
+            erb = ERB.new(File.read(path), safe_level, trim_mode)
+            erb.filename = path
+          end
           return erb
         end
       end
@@ -109,6 +114,7 @@ end
 class DefLib < ErbPP
   def initialize(parent=nil, **opts, &block)
     opts[:erb_base] ||= 'lib'
+    opts[:include_files] ||= []
     super(parent, **opts, &block)
   end
   def id_assign
@@ -139,9 +145,15 @@ module DeclMethod
   def def_method(m, erb_path=nil, **opts, &block)
     DefMethod.new(self, erb_path||m, name:m, **opts, &block)
   end
+  def undef_method(m)
+    UndefMethod.new(self,name:m)
+  end
   def def_singleton_method(m, erb_path=nil, **opts, &block)
     DefMethod.new(self, erb_path||m, name:m, singleton:true, **opts, &block)
   end
+  def undef_singleton_method(m)
+    UndefSingletonMethod.new(self,name:m)
+  end
   def def_module_function(m, erb_path=nil, **opts, &block)
     DefModuleFunction.new(self, erb_path||m, name:m, **opts, &block)
   end
@@ -216,7 +228,7 @@ class DefMethod < ErbPP
   end
 
   def c_name
-    @opts[:name].gsub(/\?/,"_p").gsub(/\!/,"_bang")
+    @opts[:name].gsub(/\?/,"_p").gsub(/\!/,"_bang").gsub(/=/,"_set")
   end
 
   def op_map
@@ -278,6 +290,18 @@ class UndefAllocFunc < ErbPP
   end
 end
 
+class UndefMethod < ErbPP
+  def init_def
+    "rb_undef_method(#{_mod_var},\"#{name}\");"
+  end
+end
+
+class UndefSingletonMethod < ErbPP
+  def init_def
+    "rb_undef_method(rb_singleton_class(#{_mod_var}),\"#{name}\");"
+  end
+end
+
 class DefConst < ErbPP
   def init_def
     "/*#{desc}*/
@@ -285,6 +309,20 @@ class DefConst < ErbPP
   end
 end
 
+class DefError < ErbPP
+  def initialize(parent, name, sup_var, **opts, &block)
+    super(parent, error_name:name, error_var:"e"+name, super_var:sup_var,
+          **opts, &block)
+  end
+  def result
+    "static VALUE #{error_var};"
+  end
+  def init_def
+    "/*#{description}*/
+    #{error_var} = rb_define_class_under(#{ns_var},\"#{error_name}\",#{super_var});"
+  end
+end
+
 class DefStruct < ErbPP
   def method_code
     "static VALUE #{class_var};"

data/ext/numo/gsl/gen/erbpp_gsl.rb

@@ -1,3 +1,5 @@
+require_relative "erbpp2"
+require_relative "erbln"
 require_relative "func_parser"
 
 module ErbppGsl
@@ -23,7 +25,9 @@ module ErbppGsl
 
   def read_eval(prefix)
     fmt = prefix + "_%s.rb"
-    fn = fmt % `gsl-config --version`.chomp
+    # MinGW fails to invoke shell script command (gsl-config)
+    cmd = "sh -c '`which gsl-config` --version'"
+    fn = fmt % `#{cmd}`.chomp
     if !File.exist?(fn)
       fn = fmt % "def"
     end

data/ext/numo/gsl/gen/func_parser.rb

@@ -1,5 +1,3 @@
-require_relative "erbpp2"
-
 class Argument
 
   def description

data/ext/numo/gsl/histogram/erbpp_histogram.rb

@@ -1,5 +1,4 @@
 require_relative "../gen/erbpp_gsl"
-require "erbpp/line_number"
 
 hist_list =
 [
@@ -77,6 +76,7 @@ class DefHistogram < DefGslClass
 end
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/ext/numo/gsl/interp/erbpp_interp.rb

@@ -1,5 +1,5 @@
+require_relative "../gen/erbpp_gsl"
 require_relative "parse_interp"
-require "erbpp/line_number"
 
 gsl_list = ErbppGsl.read_func_pattern(
  [/^gsl_interp_accel_(\w+)$/,    interp_accel_list=[]],
@@ -20,6 +20,7 @@ gsl_list.each do |h|
 end
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/ext/numo/gsl/mkmf_gsl.rb

@@ -0,0 +1,33 @@
+require 'mkmf'
+
+def find_narray_h
+  $LOAD_PATH.each do |x|
+    if File.exist? File.join(x,'numo/numo/narray.h')
+      $INCFLAGS = "-I#{x}/numo " + $INCFLAGS
+      break
+    end
+  end
+end
+
+def find_libnarray_a
+  $LOAD_PATH.each do |x|
+    if File.exist? File.join(x,'numo/libnarray.a')
+      $LDFLAGS = "-L#{x}/numo " + $LDFLAGS
+      break
+    end
+  end
+end
+
+def create_depend
+  require 'erb'
+  message "creating depend\n"
+  dep_path = File.join(Dir.pwd, "depend")
+  File.open(dep_path, "w") do |dep|
+    dep_erb_path = File.join(Dir.pwd, "depend.erb")
+    File.open(dep_erb_path, "r") do |dep_erb|
+      erb = ERB.new(dep_erb.read)
+      erb.filename = dep_erb_path
+      dep.print(erb.result)
+    end
+  end
+end

data/ext/numo/gsl/multifit/erbpp_multifit.rb

@@ -1,5 +1,4 @@
 require_relative "../gen/erbpp_gsl"
-require "erbpp/line_number"
 require "pp"
 
 ErbppGsl.read_func_pattern(
@@ -50,6 +49,7 @@ end
 
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
 

data/ext/numo/gsl/numo_gsl.h

@@ -81,7 +81,7 @@
         gvec = ALLOCA_N(gsl_vector,1);                  \
         gvec->data   = (double*)NDL_PTR(lp,i);          \
         gvec->size   = (lp)->args[i].shape[0];          \
-        gvec->stride = NDL_STP(lp,i)/sizeof(double);    \
+        gvec->stride = NDL_SETP(lp,i)/sizeof(double);   \
         gvec->block  = 0;                               \
         gvec->owner  = 0;                               \
     }
@@ -102,7 +102,7 @@
         assert((lp)->args[i].ndim == 1);                \
         gvec.data   = (double*)NDL_PTR(lp,i);           \
         gvec.size   = (lp)->args[i].shape[0];           \
-        gvec.stride = NDL_STP(lp,i)/sizeof(double);     \
+        gvec.stride = NDL_STEP(lp,i)/sizeof(double);    \
         gvec.block  = 0;                                \
         gvec.owner  = 0;                                \
     }

data/ext/numo/gsl/pdf/erbpp_pdf.rb

@@ -1,7 +1,8 @@
+require_relative "../gen/erbpp_gsl"
 require_relative "parse_pdf"
-require "erbpp/line_number"
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/ext/numo/gsl/poly/erbpp_poly.rb

@@ -1,5 +1,4 @@
 require_relative "../gen/erbpp_gsl"
-require "erbpp/line_number"
 
 func_list = ErbppGsl.read_func
 ErbppGsl.read_func_pattern(
@@ -28,6 +27,7 @@ class DefPoly < DefGslModule
 end
 
 DefLib.new(nil) do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/ext/numo/gsl/ran/erbpp_ran.rb

@@ -1,5 +1,5 @@
+require_relative "../gen/erbpp_gsl"
 require_relative "parse_ran"
-require "erbpp/line_number"
 
 ErbppGsl.read_func_pattern(
   [ /^gsl_ran_discrete_(\w+)$/,   disc_list=[]],
@@ -7,6 +7,7 @@ ErbppGsl.read_func_pattern(
 )
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/ext/numo/gsl/rng/erbpp_rng.rb

@@ -1,5 +1,5 @@
+require_relative "../gen/erbpp_gsl"
 require_relative "parse_rng"
-require "erbpp/line_number"
 
 ErbppGsl.read_func_pattern(
  [/gsl_rng_/, rng_list=[]],
@@ -10,6 +10,7 @@ ran_list = ErbppGsl.read_func("../ran/func").select{|h|
 }
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/ext/numo/gsl/rstat/erbpp_rstat.rb

@@ -1,5 +1,4 @@
 require_relative "../gen/erbpp_gsl"
-require "erbpp/line_number"
 
 ErbppGsl.read_func_pattern(
   [/^gsl_rstat_quantile_(\w+)$/,rquantile_list=[]],
@@ -22,6 +21,7 @@ class DefRstat < DefGslClass
 end
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
 

data/ext/numo/gsl/sf/erbpp_sf.rb

@@ -1,6 +1,5 @@
+require_relative "../gen/erbpp_gsl"
 require_relative "parse_sf"
-require "erbpp/line_number"
-
 
 ErbppGsl.read_func_pattern(
  [/gsl_sf_mathieu_(\w+_array|alloc|free)$/,  mathieu_list=[]],
@@ -8,6 +7,7 @@ ErbppGsl.read_func_pattern(
 )
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/ext/numo/gsl/spmatrix/erbpp_spmatrix.rb

@@ -1,5 +1,5 @@
+require_relative "../gen/erbpp_gsl"
 require_relative "parse_spmatrix"
-require "erbpp/line_number"
 
 class_list = [
  ["SpMatrix","spmatrix",[]],
@@ -13,6 +13,7 @@ ErbppGsl.read_func_pattern(*class_list.map{|name,base|
 const_list = ErbppGsl.read_const
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/ext/numo/gsl/stats/erbpp_stats.rb

@@ -1,11 +1,12 @@
+require_relative "../gen/erbpp_gsl"
 require_relative "parse_stats"
-require "erbpp/line_number"
 
 ErbppGsl.read_func_pattern(
  [/^gsl_stats_(\w+)$/, stats_list=[]]
 )
 
 DefLib.new(nil) do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/ext/numo/gsl/sys/erbpp_sys.rb

@@ -1,5 +1,4 @@
 require_relative "../gen/erbpp_gsl"
-require "erbpp/line_number"
 
 func_list  = ErbppGsl.read_func
 const_list = ErbppGsl.read_const
@@ -26,6 +25,7 @@ class DefSys < DefGslModule
 end
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
 

data/ext/numo/gsl/version.h

@@ -1 +1 @@
-#define NUMO_GSL_VERSION "0.1.1"
+#define NUMO_GSL_VERSION "0.1.2"

data/ext/numo/gsl/wavelet/erbpp_wavelet.rb

@@ -1,6 +1,5 @@
-require_relative "parse_wavelet"
 require_relative "../gen/erbpp_gsl"
-require "erbpp/line_number"
+require_relative "parse_wavelet"
 
 
 gsl_list = ErbppGsl.read_func
@@ -16,6 +15,7 @@ ErbppGsl.read_func_pattern(
 list_2d << list_1d.find{|h| h[:func_name]=="gsl_wavelet_alloc"}
 
 DefLib.new do
+  set line_number: true
   set erb_dir: %w[tmpl ../gen/tmpl]
   set erb_suffix: ".c"
   set ns_var: "mG"

data/numo-gsl.gemspec

@@ -19,7 +19,7 @@ Gem::Specification.new do |spec|
   spec.email         = ["masa16.tanaka@gmail.com"]
   spec.description   = %q{Numo::GSL development version.}
   spec.summary       = %q{Numo::GSL development version}
-  spec.homepage      = "https://github.com/ruby-numo/gsl"
+  spec.homepage      = "https://github.com/ruby-numo/numo-gsl"
   spec.license       = "GPL-3"
 
   spec.files         = `git ls-files Gemfile README.md Rakefile ext lib numo-gsl.gemspec spec`.split($/)
@@ -29,5 +29,5 @@ Gem::Specification.new do |spec|
   spec.extensions    = spec.files.grep(%r{^ext/numo/gsl/.*/extconf\.rb$})
   spec.add_development_dependency "bundler", "~> 1.3"
   spec.add_development_dependency "rake", "~> 0"
-  spec.add_runtime_dependency "numo-narray", "~> 0.9.0"
+  spec.add_runtime_dependency "numo-narray", ">= 0.9.0.8"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: numo-gsl
 version: !ruby/object:Gem::Version
-  version: 0.1.1
+  version: 0.1.2
 platform: ruby
 authors:
 - Masahiro TANAKA
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-12-28 00:00:00.000000000 Z
+date: 2018-04-14 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -42,16 +42,16 @@ dependencies:
   name: numo-narray
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
-        version: 0.9.0
+        version: 0.9.0.8
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
-        version: 0.9.0
+        version: 0.9.0.8
 description: Numo::GSL development version.
 email:
 - masa16.tanaka@gmail.com
@@ -102,6 +102,7 @@ files:
 - ext/numo/gsl/fit/tmpl/fit_mul_est.c
 - ext/numo/gsl/fit/tmpl/fit_wlinear.c
 - ext/numo/gsl/fit/tmpl/fit_wmul.c
+- ext/numo/gsl/gen/erbln.rb
 - ext/numo/gsl/gen/erbpp2.rb
 - ext/numo/gsl/gen/erbpp_gsl.rb
 - ext/numo/gsl/gen/func_parser.rb
@@ -206,6 +207,7 @@ files:
 - ext/numo/gsl/interp/tmpl/spline_eval.c
 - ext/numo/gsl/interp/tmpl/spline_integ.c
 - ext/numo/gsl/interp/type_def.rb
+- ext/numo/gsl/mkmf_gsl.rb
 - ext/numo/gsl/multifit/depend
 - ext/numo/gsl/multifit/erbpp_multifit.rb
 - ext/numo/gsl/multifit/extconf.rb
@@ -340,7 +342,7 @@ files:
 - ext/numo/gsl/wavelet/type_def.rb
 - lib/numo/gsl.rb
 - numo-gsl.gemspec
-homepage: https://github.com/ruby-numo/gsl
+homepage: https://github.com/ruby-numo/numo-gsl
 licenses:
 - GPL-3
 metadata: {}